Conservation of cofitness between PS417_09565 and PS417_22230 in Pseudomonas simiae WCS417

54 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_09565 DNA polymerase II 1.0 PS417_22230 class I peptide chain release factor 0.25 6
Pseudomonas lactucae CFBP13502 0.96 GEMAOFIL_02129 DNA polymerase II 0.97 GEMAOFIL_04582 Peptidyl-tRNA hydrolase ArfB — —
Pseudomonas fluorescens SBW25-INTG 0.95 PFLU_RS10185 DNA polymerase II 0.98 PFLU_RS23855 aminoacyl-tRNA hydrolase low > 109
Pseudomonas fluorescens SBW25 0.95 PFLU_RS10185 DNA polymerase II 0.98 PFLU_RS23855 aminoacyl-tRNA hydrolase low > 109
Pseudomonas fluorescens GW456-L13 0.83 PfGW456L13_2472 DNA polymerase II (EC 2.7.7.7) 0.94 PfGW456L13_4399 Hypothetical protein YaeJ with similarity to translation release factor — —
Pseudomonas fluorescens FW300-N2C3 0.83 AO356_01325 DNA polymerase II 0.95 AO356_18535 class I peptide chain release factor low > 104
Pseudomonas fluorescens FW300-N1B4 0.83 Pf1N1B4_87 DNA polymerase II (EC 2.7.7.7) 0.96 Pf1N1B4_3560 Hypothetical protein YaeJ with similarity to translation release factor — —
Pseudomonas fluorescens FW300-N2E2 0.83 Pf6N2E2_2137 DNA polymerase II (EC 2.7.7.7) 0.96 Pf6N2E2_5634 Hypothetical protein YaeJ with similarity to translation release factor low > 103
Pseudomonas syringae pv. syringae B728a ΔmexB 0.82 Psyr_2361 DNA damage-inducible DNA polymerase II 0.91 Psyr_3579 Class I peptide chain release factor low > 86
Pseudomonas syringae pv. syringae B728a 0.82 Psyr_2361 DNA damage-inducible DNA polymerase II 0.91 Psyr_3579 Class I peptide chain release factor — —
Pseudomonas fluorescens FW300-N2E3 0.82 AO353_29350 DNA polymerase II 0.97 AO353_18560 class I peptide chain release factor low > 101
Pseudomonas sp. RS175 0.81 PFR28_01299 DNA polymerase II 0.93 PFR28_03310 Peptidyl-tRNA hydrolase ArfB low > 88
Pseudomonas sp. DMC3 0.81 GFF1404 DNA polymerase II 0.95 GFF2408 Peptidyl-tRNA hydrolase ArfB low > 89
Pseudomonas sp. SVBP6 0.81 COO64_RS07850 DNA polymerase II 0.83 COO64_RS21680 arfB alternative ribosome rescue aminoacyl-tRNA hydrolase ArfB low > 93
Pseudomonas sp. S08-1 0.78 OH686_16850 DNA polymerase II 0.85 OH686_21180 Peptidyl-tRNA hydrolase ArfB low > 80
Pseudomonas aeruginosa PA14 0.77 IKLFDK_09200 DNA polymerase II 0.81 IKLFDK_03845 aminoacyl-tRNA hydrolase low > 100
Pseudomonas stutzeri RCH2 0.76 Psest_1519 DNA polymerase elongation subunit (family B) 0.87 Psest_2674 Protein chain release factor B low > 67
Paraburkholderia graminis OAS925 0.75 ABIE53_004018 DNA polymerase-2 0.59 ABIE53_001814 ribosome-associated protein low > 113
Pseudomonas putida KT2440 0.74 PP_2393 DNA polymerase II 0.87 PP_2946 peptidyl-tRNA hydrolase, ribosome rescue factor low > 96
Pseudomonas sp. BP01 0.74 JOY50_RS10610 DNA polymerase II 0.89 JOY50_RS03610 arfB alternative ribosome rescue aminoacyl-tRNA hydrolase ArfB — —
Paraburkholderia sabiae LMG 24235 0.74 QEN71_RS13385 DNA polymerase II 0.56 QEN71_RS23175 alternative ribosome rescue aminoacyl-tRNA hydrolase ArfB low > 153
Burkholderia phytofirmans PsJN 0.74 BPHYT_RS23105 DNA polymerase 0.59 BPHYT_RS07990 peptide chain release factor I — —
Paraburkholderia bryophila 376MFSha3.1 0.74 H281DRAFT_01369 DNA damage-inducible DNA polymerase II 0.58 H281DRAFT_05089 ribosome-associated protein low > 103
Cupriavidus basilensis FW507-4G11 0.73 RR42_RS09335 DNA polymerase II 0.50 RR42_RS19995 class I peptide chain release factor — —
Serratia liquefaciens MT49 0.73 IAI46_03280 DNA polymerase II 0.64 IAI46_20110 aminoacyl-tRNA hydrolase low > 86
Rahnella sp. WP5 0.71 EX31_RS03740 DNA polymerase II 0.64 EX31_RS12915 aminoacyl-tRNA hydrolase low > 89
Erwinia amylovora T8 0.69 OLJFJH_01335 DNA polymerase II 0.60 OLJFJH_00515 aminoacyl-tRNA hydrolase 0.31 15
Pantoea sp. MT58 0.68 IAI47_16050 DNA polymerase II 0.64 IAI47_15415 aminoacyl-tRNA hydrolase low > 76
Pantoea agglomerans CFBP13505 P0401 0.68 PagCFBP13505_RS12945 DNA polymerase II 0.64 PagCFBP13505_RS13590 aminoacyl-tRNA hydrolase low > 74
Enterobacter sp. TBS_079 0.68 MPMX20_00754 DNA polymerase II 0.62 MPMX20_00876 Peptidyl-tRNA hydrolase ArfB 0.21 71
Enterobacter asburiae PDN3 0.68 EX28DRAFT_3652 DNA polymerase elongation subunit (family B) 0.63 EX28DRAFT_3780 RF-1 domain low > 76
Klebsiella pneumoniae MKP103 0.68 KDGMDA_12800 DNA polymerase II 0.60 KDGMDA_13575 aminoacyl-tRNA hydrolase low > 95
Escherichia fergusonii Becca 0.67 EFB2_03985 DNA polymerase II 0.63 EFB2_03852 Peptidyl-tRNA hydrolase ArfB low > 86
Escherichia coli BL21 0.67 ECD_00062 DNA polymerase II 0.63 ECD_00190 alternative stalled-ribosome rescue factor B; peptidyl-tRNA hydrolase, ribosome-attached low > 61
Escherichia coli ECOR38 0.67 HEPCGN_08785 polB DNA polymerase II 0.63 HEPCGN_08050 arfB aminoacyl-tRNA hydrolase low > 88
Escherichia coli Nissle 1917 0.67 ECOLIN_RS00320 DNA polymerase II 0.63 ECOLIN_RS01040 alternative ribosome rescue aminoacyl-tRNA hydrolase ArfB — —
Escherichia coli BW25113 0.67 b0060 polB DNA polymerase II (NCBI) 0.64 b0191 yaeJ hypothetical protein (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.67 OHPLBJKB_03598 DNA polymerase II 0.64 OHPLBJKB_03471 Peptidyl-tRNA hydrolase ArfB low > 74
Klebsiella michiganensis M5al 0.67 BWI76_RS04575 DNA polymerase II 0.60 BWI76_RS05330 aminoacyl-tRNA hydrolase low > 92
Escherichia coli ECRC99 0.67 KEDOAH_17360 polB DNA polymerase II 0.61 KEDOAH_18060 arfB aminoacyl-tRNA hydrolase — —
Escherichia coli ECRC101 0.67 MCAODC_01310 polB DNA polymerase II 0.61 MCAODC_00610 arfB aminoacyl-tRNA hydrolase low > 88
Escherichia coli ECRC98 0.67 JDDGAC_14390 polB DNA polymerase II 0.61 JDDGAC_13690 arfB aminoacyl-tRNA hydrolase low > 87
Escherichia coli ECRC100 0.67 OKFHMN_10795 polB DNA polymerase II 0.61 OKFHMN_10095 arfB aminoacyl-tRNA hydrolase low > 79
Escherichia coli ECRC102 0.67 NIAGMN_08645 polB DNA polymerase II 0.61 NIAGMN_07945 arfB aminoacyl-tRNA hydrolase low > 80
Escherichia coli ECRC62 0.67 BNILDI_08465 polB DNA polymerase II 0.64 BNILDI_09230 arfB aminoacyl-tRNA hydrolase low > 75
Escherichia coli ECOR27 0.67 NOLOHH_03140 polB DNA polymerase II 0.64 NOLOHH_02440 arfB aminoacyl-tRNA hydrolase low > 76
Erwinia tracheiphila HP pepo 2.2 0.66 IJEDHG_06070 polB DNA polymerase II 0.52 IJEDHG_15295 arfB aminoacyl-tRNA hydrolase low > 61
Erwinia tracheiphila SCR3 0.66 LU632_RS02810 polB DNA polymerase II 0.52 LU632_RS19850 arfB aminoacyl-tRNA hydrolase low > 74
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.66 GFF182 DNA polymerase II (EC 2.7.7.7) 0.57 GFF29 Hypothetical protein YaeJ with similarity to translation release factor low > 78
Variovorax sp. SCN45 0.56 GFF7213 DNA polymerase II (EC 2.7.7.7) 0.63 GFF2789 Peptidyl-tRNA hydrolase ArfB (EC 3.1.1.29) low > 127
Shewanella amazonensis SB2B 0.39 Sama_1250 DNA polymerase II (RefSeq) 0.56 Sama_3193 peptidyl-tRNA hydrolase domain protein (RefSeq) 0.41 18
Shewanella loihica PV-4 0.39 Shew_2482 DNA polymerase II (RefSeq) 0.47 Shew_3362 hypothetical protein (RefSeq) — —
Shewanella sp. ANA-3 0.39 Shewana3_2629 DNA polymerase II (RefSeq) 0.49 Shewana3_0512 peptidyl-tRNA hydrolase domain protein (RefSeq) low > 73
Shewanella oneidensis MR-1 0.39 SO1820 polB DNA polymerase II (NCBI ptt file) 0.49 SO0513 prokaryotic and mitochondrial release factors family protein (NCBI ptt file) low > 76
Alteromonas macleodii MIT1002 0.38 MIT1002_03358 DNA polymerase II 0.52 MIT1002_03877 Peptidyl-tRNA hydrolase YaeJ low > 70

Not shown: 6 genomes with orthologs for PS417_09565 only; 40 genomes with orthologs for PS417_22230 only