Conservation of cofitness between PS417_26370 and PS417_21420 in Pseudomonas simiae WCS417

55 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_26370 RNA helicase 1.0 PS417_21420 aminodeoxychorismate lyase 0.39 11
Pseudomonas fluorescens SBW25-INTG 1.00 PFLU_RS28020 ATP-dependent RNA helicase DbpA 0.91 PFLU_RS23035 endolytic transglycosylase MltG low > 109
Pseudomonas fluorescens SBW25 1.00 PFLU_RS28020 ATP-dependent RNA helicase DbpA 0.91 PFLU_RS23035 endolytic transglycosylase MltG low > 109
Pseudomonas fluorescens FW300-N2C3 0.95 AO356_13770 ATP-dependent RNA helicase 0.73 AO356_20185 aminodeoxychorismate lyase low > 104
Pseudomonas fluorescens FW300-N2E2 0.95 Pf6N2E2_4673 ATP-dependent 23S rRNA helicase DbpA 0.74 Pf6N2E2_5956 FIG004453: protein YceG like low > 103
Pseudomonas sp. RS175 0.94 PFR28_04172 ATP-dependent RNA helicase DbpA 0.73 PFR28_03006 Endolytic murein transglycosylase low > 88
Pseudomonas fluorescens FW300-N1B4 0.93 Pf1N1B4_2412 ATP-dependent 23S rRNA helicase DbpA 0.73 Pf1N1B4_447 FIG004453: protein YceG like low > 87
Pseudomonas fluorescens GW456-L13 0.93 PfGW456L13_1078 ATP-dependent 23S rRNA helicase DbpA 0.74 PfGW456L13_2109 FIG004453: protein YceG like low > 87
Pseudomonas fluorescens FW300-N2E3 0.91 AO353_07850 ATP-dependent RNA helicase 0.76 AO353_01345 aminodeoxychorismate lyase low > 101
Pseudomonas syringae pv. syringae B728a ΔmexB 0.88 Psyr_0516 ATP-dependent RNA helicase DbpA 0.71 Psyr_1651 Protein of unknown function DUF175 low > 86
Pseudomonas syringae pv. syringae B728a 0.88 Psyr_0516 ATP-dependent RNA helicase DbpA 0.71 Psyr_1651 Protein of unknown function DUF175 low > 86
Pseudomonas putida KT2440 0.85 PP_4952 ATP-dependent RNA helicase, specific for 23S rRNA 0.69 PP_1918 septation protein 0.16 13
Pseudomonas stutzeri RCH2 0.84 Psest_0344 Superfamily II DNA and RNA helicases 0.63 Psest_1692 conserved hypothetical protein, YceG family low > 67
Pseudomonas sp. S08-1 0.74 OH686_14770 ATP-dependent 23S rRNA helicase DbpA 0.62 OH686_22160 Murein endolytic transglycosylase MltG low > 80
Hydrogenophaga sp. GW460-11-11-14-LB1 0.60 GFF5449 ATP-dependent 23S rRNA helicase DbpA 0.32 GFF4661 FIG004453: protein YceG like low > 90
Marinobacter adhaerens HP15 0.59 HP15_1329 DEAD/DEAH box helicase domain protein 0.44 HP15_2208 aminodeoxychorismate lyase — —
Serratia liquefaciens MT49 0.58 IAI46_14765 ATP-dependent RNA helicase DbpA 0.32 IAI46_09810 endolytic transglycosylase MltG low > 86
Variovorax sp. OAS795 0.58 ABID97_RS02340 ATP-dependent RNA helicase DbpA 0.34 ABID97_RS15980 endolytic transglycosylase MltG low > 91
Pectobacterium carotovorum WPP14 0.57 HER17_RS06775 ATP-dependent RNA helicase DbpA 0.30 HER17_RS08670 endolytic transglycosylase MltG low > 75
Acidovorax sp. GW101-3H11 0.56 Ac3H11_4671 ATP-dependent 23S rRNA helicase DbpA 0.37 Ac3H11_2492 FIG004453: protein YceG like low > 79
Variovorax sp. SCN45 0.55 GFF7138 ATP-dependent 23S rRNA helicase DbpA 0.34 GFF30 Murein endolytic transglycosylase MltG low > 127
Rahnella sp. WP5 0.55 EX31_RS24740 ATP-dependent RNA helicase DbpA 0.29 EX31_RS24455 endolytic transglycosylase MltG low > 89
Dyella japonica UNC79MFTsu3.2 0.54 ABZR86_RS05195 ATP-dependent RNA helicase DbpA 0.38 ABZR86_RS06145 endolytic transglycosylase MltG low > 74
Shewanella amazonensis SB2B 0.53 Sama_0752 ATP-dependent RNA helicase DbpA (RefSeq) 0.30 Sama_2044 hypothetical protein (RefSeq) low > 62
Klebsiella michiganensis M5al 0.53 BWI76_RS12705 ATP-dependent RNA helicase 0.28 BWI76_RS11110 cell division protein YceG low > 92
Shewanella sp. ANA-3 0.53 Shewana3_3384 ATP-dependent RNA helicase DbpA (RefSeq) 0.29 Shewana3_1765 aminodeoxychorismate lyase (RefSeq) low > 73
Shewanella oneidensis MR-1 0.53 SO0897 dbpA ATP-dependent RNA helicase DbpA (NCBI ptt file) 0.29 SO2614 conserved hypothetical protein TIGR00247 (NCBI ptt file) low > 76
Dickeya dadantii 3937 0.53 DDA3937_RS11045 ATP-dependent RNA helicase DbpA 0.30 DDA3937_RS23250 endolytic transglycosylase MltG low > 74
Dickeya dianthicola 67-19 0.53 HGI48_RS11065 ATP-dependent RNA helicase DbpA 0.30 HGI48_RS13165 endolytic transglycosylase MltG low > 71
Castellaniella sp019104865 MT123 0.53 ABCV34_RS04635 ATP-dependent RNA helicase DbpA 0.30 ABCV34_RS03975 endolytic transglycosylase MltG low > 48
Enterobacter asburiae PDN3 0.53 EX28DRAFT_1006 Superfamily II DNA and RNA helicases 0.28 EX28DRAFT_1832 conserved hypothetical protein, YceG family low > 76
Dickeya dianthicola ME23 0.53 DZA65_RS11470 ATP-dependent RNA helicase DbpA 0.30 DZA65_RS13635 endolytic transglycosylase MltG low > 75
Shewanella loihica PV-4 0.53 Shew_0598 ATP-dependent RNA helicase DbpA (RefSeq) 0.28 Shew_1578 aminodeoxychorismate lyase (RefSeq) — —
Rhodanobacter sp. FW510-T8 0.52 OKGIIK_16320 dbpA ATP-dependent RNA helicase DbpA 0.35 OKGIIK_05740 Endolytic murein transglycosylase low > 52
Escherichia coli ECRC62 0.52 BNILDI_18025 dbpA ATP-dependent RNA helicase DbpA 0.28 BNILDI_19245 yceG cell division protein YceG — —
Enterobacter sp. TBS_079 0.52 MPMX20_02441 ATP-dependent RNA helicase DbpA 0.27 MPMX20_01777 Endolytic murein transglycosylase low > 85
Escherichia fergusonii Becca 0.52 EFB2_02584 ATP-dependent RNA helicase DbpA 0.28 EFB2_02878 Endolytic murein transglycosylase low > 86
Escherichia coli ECOR38 0.52 HEPCGN_26000 dbpA ATP-dependent RNA helicase DbpA 0.28 HEPCGN_23925 yceG cell division protein YceG low > 85
Escherichia coli ECOR27 0.52 NOLOHH_19875 dbpA ATP-dependent RNA helicase DbpA 0.28 NOLOHH_21085 yceG cell division protein YceG — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.52 GFF2649 ATP-dependent 23S rRNA helicase DbpA 0.27 GFF3379 FIG004453: protein YceG like low > 78
Escherichia coli BW25113 0.52 b1343 dbpA ATP-dependent RNA helicase, specific for 23S rRNA (NCBI) 0.27 b1097 yceG predicted aminodeoxychorismate lyase (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.52 OHPLBJKB_02338 ATP-dependent RNA helicase DbpA 0.28 OHPLBJKB_02569 Endolytic murein transglycosylase low > 73
Escherichia coli BL21 0.52 ECD_01320 ATP-dependent RNA helicase, specific for 23S rRNA 0.28 ECD_01093 septation protein, ampicillin sensitivity low > 60
Escherichia coli ECRC101 0.52 MCAODC_16095 dbpA ATP-dependent RNA helicase DbpA 0.28 MCAODC_22915 yceG cell division protein YceG — —
Escherichia coli ECRC101 0.52 OKFHMN_02160 dbpA ATP-dependent RNA helicase DbpA 0.28 OKFHMN_03555 yceG cell division protein YceG — —
Escherichia coli ECRC102 0.52 NIAGMN_26330 dbpA ATP-dependent RNA helicase DbpA 0.28 NIAGMN_24275 yceG cell division protein YceG — —
Escherichia coli ECRC98 0.52 JDDGAC_04720 dbpA ATP-dependent RNA helicase DbpA 0.28 JDDGAC_07215 yceG cell division protein YceG — —
Escherichia coli ECRC99 0.52 KEDOAH_26595 dbpA ATP-dependent RNA helicase DbpA 0.28 KEDOAH_24200 yceG cell division protein YceG — —
Rhodanobacter denitrificans MT42 0.52 LRK55_RS09695 ATP-dependent RNA helicase DbpA 0.34 LRK55_RS00935 endolytic transglycosylase MltG low > 63
Rhodanobacter denitrificans FW104-10B01 0.52 LRK54_RS10055 ATP-dependent RNA helicase DbpA 0.34 LRK54_RS01160 endolytic transglycosylase MltG low > 59
Vibrio cholerae E7946 ATCC 55056 0.51 CSW01_12980 ATP-dependent RNA helicase DbpA 0.34 CSW01_10075 endolytic transglycosylase MltG low > 62
Kangiella aquimarina DSM 16071 0.50 B158DRAFT_2047 ATP-dependent RNA helicase DbpA (EC 5.99.1.-) 0.36 B158DRAFT_1749 conserved hypothetical protein, YceG family low > 40
Pantoea sp. MT58 0.50 IAI47_15055 ATP-dependent RNA helicase DbpA 0.30 IAI47_12050 cell division protein YceG low > 76
Erwinia tracheiphila SCR3 0.50 LU632_RS11995 dbpA ATP-dependent RNA helicase DbpA 0.29 LU632_RS14800 yceG cell division protein YceG low > 74
Lysobacter sp. OAE881 0.50 ABIE51_RS14930 ATP-dependent RNA helicase DbpA 0.32 ABIE51_RS13920 endolytic transglycosylase MltG low > 62
Alteromonas macleodii MIT1002 0.43 MIT1002_03748 ATP-independent RNA helicase DbpA 0.33 MIT1002_01737 putative aminodeoxychorismate lyase — —

Not shown: 12 genomes with orthologs for PS417_26370 only; 14 genomes with orthologs for PS417_21420 only