Conservation of cofitness between PS417_04175 and PS417_21010 in Pseudomonas simiae WCS417

38 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_04175 peptidase 1.0 PS417_21010 ribonuclease activity regulator protein RraA 0.21 5
Pseudomonas fluorescens SBW25 0.89 PFLU_RS04215 ClpXP protease specificity-enhancing factor 1.00 PFLU_RS22620 putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase low > 109
Pseudomonas fluorescens SBW25-INTG 0.89 PFLU_RS04215 ClpXP protease specificity-enhancing factor 1.00 PFLU_RS22620 putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase low > 109
Pseudomonas sp. S08-1 0.78 OH686_08370 Stringent starvation protein B 0.91 OH686_01650 Ribonuclease E inhibitor RraA low > 80
Pseudomonas fluorescens FW300-N2E2 0.76 Pf6N2E2_5341 Stringent starvation protein B 0.93 Pf6N2E2_2387 Ribonuclease E inhibitor RraA low > 103
Pseudomonas fluorescens FW300-N2C3 0.76 AO356_17085 peptidase 0.94 AO356_02815 ribonuclease activity regulator protein RraA low > 104
Pseudomonas sp. RS175 0.75 PFR28_03602 Stringent starvation protein B 0.94 PFR28_01040 Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase low > 88
Pseudomonas syringae pv. syringae B728a ΔmexB 0.75 Psyr_4117 Stringent starvation protein B 0.86 Psyr_2092 Protein of unknown function 1935 low > 86
Pseudomonas fluorescens FW300-N1B4 0.75 Pf1N1B4_958 Stringent starvation protein B 0.92 Pf1N1B4_3828 Ribonuclease E inhibitor RraA low > 87
Pseudomonas syringae pv. syringae B728a 0.75 Psyr_4117 Stringent starvation protein B 0.86 Psyr_2092 Protein of unknown function 1935 low > 86
Pseudomonas fluorescens FW300-N2E3 0.75 AO353_15265 peptidase 0.95 AO353_00850 ribonuclease activity regulator protein RraA low > 101
Pseudomonas fluorescens GW456-L13 0.75 PfGW456L13_1638 Stringent starvation protein B 0.93 PfGW456L13_4110 Ribonuclease E inhibitor RraA low > 87
Pseudomonas stutzeri RCH2 0.74 Psest_3275 Stringent starvation protein B 0.89 Psest_2315 RraA famliy low > 67
Pseudomonas putida KT2440 0.73 PP_1321 ClpXP protease specificity-enhancing factor 0.93 PP_2084 Putative regulator of ribonuclease activity low > 96
Marinobacter adhaerens HP15 0.52 HP15_549 stringent starvation protein B 0.70 HP15_2228 ribonuclease activity regulator protein RraA low > 73
Pectobacterium carotovorum WPP14 0.48 HER17_RS19930 ClpXP protease specificity-enhancing factor 0.54 HER17_RS00840 ribonuclease E activity regulator RraA low > 75
Vibrio cholerae E7946 ATCC 55056 0.47 CSW01_03065 ClpXP protease specificity-enhancing factor 0.55 CSW01_13500 ribonuclease E activity regulator RraA low > 62
Pantoea sp. MT58 0.47 IAI47_17230 ClpXP protease specificity-enhancing factor 0.48 IAI47_00840 ribonuclease E activity regulator RraA low > 76
Shewanella amazonensis SB2B 0.47 Sama_3017 ClpXP protease specificity-enhancing factor (RefSeq) 0.57 Sama_3200 ribonuclease activity regulator protein RraA (RefSeq) 0.46 42
Erwinia tracheiphila SCR3 0.46 LU632_RS21325 sspB ClpXP protease specificity-enhancing factor 0.54 LU632_RS19685 rraA ribonuclease E activity regulator RraA low > 74
Enterobacter sp. TBS_079 0.46 MPMX20_04132 Stringent starvation protein B 0.54 MPMX20_04540 Regulator of ribonuclease activity A low > 85
Klebsiella michiganensis M5al 0.46 BWI76_RS25330 stringent starvation protein B 0.54 BWI76_RS00740 ribonuclease E activity regulator RraA — —
Shewanella sp. ANA-3 0.45 Shewana3_0605 ClpXP protease specificity-enhancing factor (RefSeq) 0.59 Shewana3_3723 ribonuclease activity regulator protein RraA (RefSeq) low > 73
Alteromonas macleodii MIT1002 0.45 MIT1002_00818 Stringent starvation protein B 0.52 MIT1002_00164 Regulator of ribonuclease activity A low > 70
Serratia liquefaciens MT49 0.45 IAI46_22360 ClpXP protease specificity-enhancing factor 0.54 IAI46_24585 ribonuclease E activity regulator RraA low > 86
Shewanella oneidensis MR-1 0.45 SO0612 sspB stringent starvation protein b (NCBI ptt file) 0.58 SO4197 menG-2 S-adenosylmethionine:2-demethylmenaquinone methyltransferase (NCBI ptt file) — —
Dickeya dadantii 3937 0.44 DDA3937_RS01650 ClpXP protease specificity-enhancing factor 0.52 DDA3937_RS00905 ribonuclease E activity regulator RraA low > 74
Dickeya dianthicola ME23 0.44 DZA65_RS01620 ClpXP protease specificity-enhancing factor 0.51 DZA65_RS21515 ribonuclease E activity regulator RraA low > 75
Dickeya dianthicola 67-19 0.44 HGI48_RS01550 ClpXP protease specificity-enhancing factor 0.52 HGI48_RS20470 ribonuclease E activity regulator RraA low > 71
Shewanella loihica PV-4 0.43 Shew_0574 ClpXP protease specificity-enhancing factor (RefSeq) 0.59 Shew_3370 ribonuclease activity regulator protein RraA (RefSeq) — —
Xanthomonas campestris pv. campestris strain 8004 0.41 Xcc-8004.2232.1 Stringent starvation protein B 0.57 Xcc-8004.1848.1 Ribonuclease E inhibitor RraA low > 74
Dechlorosoma suillum PS 0.41 Dsui_1816 stringent starvation protein B 0.58 Dsui_0010 RraA family protein low > 51
Ralstonia solanacearum GMI1000 0.39 RS_RS14655 ClpXP protease specificity-enhancing factor 0.43 RS_RS06790 ribonuclease E inhibitor RraA low > 80
Ralstonia solanacearum IBSBF1503 0.39 RALBFv3_RS06710 ClpXP protease specificity-enhancing factor 0.46 RALBFv3_RS00130 ribonuclease low > 76
Ralstonia solanacearum UW163 0.39 UW163_RS06905 ClpXP protease specificity-enhancing factor 0.46 UW163_RS13460 ribonuclease — —
Herbaspirillum seropedicae SmR1 0.37 HSERO_RS20225 starvation protein B 0.46 HSERO_RS10555 ribonuclease — —
Cupriavidus basilensis FW507-4G11 0.37 RR42_RS18805 peptidase 0.47 RR42_RS12215 ribonuclease low > 128
Ralstonia solanacearum PSI07 0.37 RPSI07_RS10525 ClpXP protease specificity-enhancing factor 0.46 RPSI07_RS17355 ribonuclease E inhibitor RraA low > 81
Ralstonia sp. UNC404CL21Col 0.36 ABZR87_RS02365 ClpXP protease specificity-enhancing factor 0.43 ABZR87_RS11580 ribonuclease E activity regulator RraA low > 80

Not shown: 5 genomes with orthologs for PS417_04175 only; 25 genomes with orthologs for PS417_21010 only