Conservation of cofitness between PS417_26370 and PS417_20930 in Pseudomonas simiae WCS417

52 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_26370 RNA helicase 1.0 PS417_20930 50S rRNA methyltransferase 0.57 3
Pseudomonas fluorescens SBW25-INTG 1.00 PFLU_RS28020 ATP-dependent RNA helicase DbpA 0.99 PFLU_RS22545 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 109
Pseudomonas fluorescens SBW25 1.00 PFLU_RS28020 ATP-dependent RNA helicase DbpA 0.99 PFLU_RS22545 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 109
Pseudomonas fluorescens FW300-N2C3 0.95 AO356_13770 ATP-dependent RNA helicase 0.93 AO356_02605 50S rRNA methyltransferase low > 104
Pseudomonas fluorescens FW300-N2E2 0.95 Pf6N2E2_4673 ATP-dependent 23S rRNA helicase DbpA 0.93 Pf6N2E2_2346 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) low > 103
Pseudomonas sp. RS175 0.94 PFR28_04172 ATP-dependent RNA helicase DbpA 0.92 PFR28_01055 Ribosomal RNA large subunit methyltransferase K/L low > 88
Pseudomonas fluorescens FW300-N1B4 0.93 Pf1N1B4_2412 ATP-dependent 23S rRNA helicase DbpA 0.92 Pf1N1B4_3844 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) low > 87
Pseudomonas fluorescens GW456-L13 0.93 PfGW456L13_1078 ATP-dependent 23S rRNA helicase DbpA 0.93 PfGW456L13_4094 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) low > 87
Pseudomonas fluorescens FW300-N2E3 0.91 AO353_07850 ATP-dependent RNA helicase 0.93 AO353_00775 50S rRNA methyltransferase low > 101
Pseudomonas syringae pv. syringae B728a ΔmexB 0.88 Psyr_0516 ATP-dependent RNA helicase DbpA 0.88 Psyr_2108 23S rRNA m(2)G-2445 methyltransferase low > 86
Pseudomonas syringae pv. syringae B728a 0.88 Psyr_0516 ATP-dependent RNA helicase DbpA 0.88 Psyr_2108 23S rRNA m(2)G-2445 methyltransferase low > 86
Pseudomonas putida KT2440 0.85 PP_4952 ATP-dependent RNA helicase, specific for 23S rRNA 0.81 PP_2096 fused 23S rRNA m2G2445 methyltransferase and 23S rRNA m7G2069 methyltransferase low > 96
Pseudomonas stutzeri RCH2 0.84 Psest_0344 Superfamily II DNA and RNA helicases 0.80 Psest_1949 Predicted N6-adenine-specific DNA methylase low > 67
Pseudomonas sp. S08-1 0.74 OH686_14770 ATP-dependent 23S rRNA helicase DbpA 0.80 OH686_03110 23S rRNA (guanine(2445)-N(2))-methyltransferase / 23S rRNA (guanine(2069)-N(7))-methyltransferase low > 80
Marinobacter adhaerens HP15 0.59 HP15_1329 DEAD/DEAH box helicase domain protein 0.45 HP15_1379 RNA methylase low > 73
Serratia liquefaciens MT49 0.58 IAI46_14765 ATP-dependent RNA helicase DbpA 0.37 IAI46_08820 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 86
Pectobacterium carotovorum WPP14 0.57 HER17_RS06775 ATP-dependent RNA helicase DbpA 0.38 HER17_RS11990 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 75
Rahnella sp. WP5 0.55 EX31_RS24740 ATP-dependent RNA helicase DbpA 0.37 EX31_RS18080 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 89
Dyella japonica UNC79MFTsu3.2 0.54 ABZR86_RS05195 ATP-dependent RNA helicase DbpA 0.43 ABZR86_RS21235 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 74
Klebsiella michiganensis M5al 0.53 BWI76_RS12705 ATP-dependent RNA helicase 0.38 BWI76_RS09925 23S rRNA (guanine(2445)-N(2))/(guanine(2069)-N(7))- methyltransferase low > 92
Shewanella amazonensis SB2B 0.53 Sama_0752 ATP-dependent RNA helicase DbpA (RefSeq) 0.38 Sama_1600 rlmL 23S rRNA m(2)G2445 methyltransferase (RefSeq) low > 62
Shewanella sp. ANA-3 0.53 Shewana3_3384 ATP-dependent RNA helicase DbpA (RefSeq) 0.37 Shewana3_1601 rlmL 23S rRNA m(2)G2445 methyltransferase (RefSeq) low > 73
Dickeya dadantii 3937 0.53 DDA3937_RS11045 ATP-dependent RNA helicase DbpA 0.38 DDA3937_RS12840 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 74
Shewanella oneidensis MR-1 0.53 SO0897 dbpA ATP-dependent RNA helicase DbpA (NCBI ptt file) 0.37 SO1851 conserved hypothetical protein (NCBI ptt file) low > 76
Dickeya dianthicola 67-19 0.53 HGI48_RS11065 ATP-dependent RNA helicase DbpA 0.38 HGI48_RS12910 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 71
Enterobacter asburiae PDN3 0.53 EX28DRAFT_1006 Superfamily II DNA and RNA helicases 0.38 EX28DRAFT_1995 Predicted N6-adenine-specific DNA methylase low > 76
Dickeya dianthicola ME23 0.53 DZA65_RS11470 ATP-dependent RNA helicase DbpA 0.38 DZA65_RS13375 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 75
Shewanella loihica PV-4 0.53 Shew_0598 ATP-dependent RNA helicase DbpA (RefSeq) 0.38 Shew_1812 23S rRNA m(2)G2445 methyltransferase (RefSeq) low > 60
Escherichia coli Nissle 1917 0.53 ECOLIN_RS08060 ATP-dependent RNA helicase DbpA 0.38 ECOLIN_RS04980 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL — —
Rhodanobacter sp. FW510-T8 0.52 OKGIIK_16320 dbpA ATP-dependent RNA helicase DbpA 0.39 OKGIIK_03440 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 52
Escherichia coli ECRC62 0.52 BNILDI_18025 dbpA ATP-dependent RNA helicase DbpA 0.38 BNILDI_20000 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL — —
Escherichia coli ECOR38 0.52 HEPCGN_26000 dbpA ATP-dependent RNA helicase DbpA 0.38 HEPCGN_23240 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 85
Enterobacter sp. TBS_079 0.52 MPMX20_02441 ATP-dependent RNA helicase DbpA 0.38 MPMX20_01599 Ribosomal RNA large subunit methyltransferase K/L low > 85
Escherichia fergusonii Becca 0.52 EFB2_02584 ATP-dependent RNA helicase DbpA 0.38 EFB2_03123 Ribosomal RNA large subunit methyltransferase K/L low > 86
Escherichia coli ECOR27 0.52 NOLOHH_19875 dbpA ATP-dependent RNA helicase DbpA 0.38 NOLOHH_21835 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.52 GFF2649 ATP-dependent 23S rRNA helicase DbpA 0.38 GFF3239 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) low > 78
Escherichia coli BW25113 0.52 b1343 dbpA ATP-dependent RNA helicase, specific for 23S rRNA (NCBI) 0.38 b0948 ycbY predicted methyltransferase (NCBI) low > 76
Escherichia coli BL21 0.52 ECD_01320 ATP-dependent RNA helicase, specific for 23S rRNA 0.38 ECD_00952 23S rRNA m(2)G2445 and m(7)G2069 methyltransferases, SAM-dependent low > 60
Escherichia coli HS(pFamp)R (ATCC 700891) 0.52 OHPLBJKB_02338 ATP-dependent RNA helicase DbpA 0.38 OHPLBJKB_02718 Ribosomal RNA large subunit methyltransferase K/L low > 73
Escherichia coli ECRC98 0.52 JDDGAC_04720 dbpA ATP-dependent RNA helicase DbpA 0.38 JDDGAC_08890 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL — —
Escherichia coli ECRC101 0.52 MCAODC_16095 dbpA ATP-dependent RNA helicase DbpA 0.38 MCAODC_24670 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL — —
Escherichia coli ECRC102 0.52 NIAGMN_26330 dbpA ATP-dependent RNA helicase DbpA 0.38 NIAGMN_03000 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL — —
Escherichia coli ECRC101 0.52 OKFHMN_02160 dbpA ATP-dependent RNA helicase DbpA 0.38 OKFHMN_05280 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL — —
Escherichia coli ECRC99 0.52 KEDOAH_26595 dbpA ATP-dependent RNA helicase DbpA 0.38 KEDOAH_22455 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL — —
Rhodanobacter denitrificans MT42 0.52 LRK55_RS09695 ATP-dependent RNA helicase DbpA 0.40 LRK55_RS14315 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 63
Rhodanobacter denitrificans FW104-10B01 0.52 LRK54_RS10055 ATP-dependent RNA helicase DbpA 0.40 LRK54_RS14600 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 59
Vibrio cholerae E7946 ATCC 55056 0.51 CSW01_12980 ATP-dependent RNA helicase DbpA 0.39 CSW01_07480 ribosomal RNA large subunit methyltransferase K/L low > 62
Kangiella aquimarina DSM 16071 0.50 B158DRAFT_2047 ATP-dependent RNA helicase DbpA (EC 5.99.1.-) 0.38 B158DRAFT_2229 23S rRNA m(2)G-2445 methyltransferase (EC 2.1.1.52) low > 40
Pantoea sp. MT58 0.50 IAI47_15055 ATP-dependent RNA helicase DbpA 0.37 IAI47_12690 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 76
Lysobacter sp. OAE881 0.50 ABIE51_RS14930 ATP-dependent RNA helicase DbpA 0.39 ABIE51_RS14475 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 62
Xanthomonas campestris pv. campestris strain 8004 0.50 Xcc-8004.2274.1 ATP-dependent 23S rRNA helicase DbpA 0.40 Xcc-8004.3335.1 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) low > 74
Erwinia tracheiphila SCR3 0.50 LU632_RS11995 dbpA ATP-dependent RNA helicase DbpA 0.38 LU632_RS09965 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 74
Alteromonas macleodii MIT1002 0.43 MIT1002_03748 ATP-independent RNA helicase DbpA 0.35 MIT1002_02036 Ribosomal RNA large subunit methyltransferase K/L — —

Not shown: 15 genomes with orthologs for PS417_26370 only; 1 genomes with orthologs for PS417_20930 only