Conservation of cofitness between Psest_0415 and Psest_4086 in Pseudomonas stutzeri RCH2

33 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas stutzeri RCH2 1.0 Psest_0415 dethiobiotin synthase 1.0 Psest_4086 Transcriptional regulator 0.65 6
Pseudomonas fluorescens FW300-N2C3 0.69 AO356_14155 dethiobiotin synthetase 0.74 AO356_12015 LysR family transcriptional regulator 0.49 10
Pseudomonas fluorescens FW300-N1B4 0.69 Pf1N1B4_2491 Dethiobiotin synthetase (EC 6.3.3.3) 0.71 Pf1N1B4_2009 LysR family transcriptional regulator PA5437 0.46 57
Pseudomonas fluorescens FW300-N2E2 0.69 Pf6N2E2_4764 Dethiobiotin synthetase (EC 6.3.3.3) 0.72 Pf6N2E2_4277 LysR family transcriptional regulator PA5437 0.52 25
Pseudomonas syringae pv. syringae B728a ΔmexB 0.69 Psyr_4683 dethiobiotin synthase 0.73 Psyr_5062 transcriptional regulator, LysR family low > 86
Pseudomonas syringae pv. syringae B728a 0.69 Psyr_4683 dethiobiotin synthase 0.73 Psyr_5062 transcriptional regulator, LysR family low > 86
Pseudomonas fluorescens GW456-L13 0.69 PfGW456L13_1151 Dethiobiotin synthetase (EC 6.3.3.3) 0.72 PfGW456L13_727 LysR family transcriptional regulator PA5437 0.64 66
Pseudomonas fluorescens FW300-N2E3 0.69 AO353_07505 dethiobiotin synthetase 0.74 AO353_10035 LysR family transcriptional regulator 0.71 8
Pseudomonas sp. RS175 0.69 PFR28_04099 ATP-dependent dethiobiotin synthetase BioD 1 0.74 PFR28_04519 HTH-type transcriptional activator CmpR — —
Pseudomonas fluorescens SBW25 0.68 PFLU_RS27630 dethiobiotin synthase 0.74 PFLU_RS29885 LysR family transcriptional regulator low > 109
Pseudomonas sp. S08-1 0.68 OH686_10335 dethiobiotin synthase 0.76 OH686_13195 Transcriptional regulator, LysR family low > 80
Pseudomonas fluorescens SBW25-INTG 0.68 PFLU_RS27630 dethiobiotin synthase 0.74 PFLU_RS29885 LysR family transcriptional regulator 0.54 6
Pseudomonas simiae WCS417 0.68 PS417_25985 dethiobiotin synthetase 0.74 PS417_28220 LysR family transcriptional regulator 0.22 43
Pseudomonas putida KT2440 0.67 PP_0366 dethiobiotin synthetase 0.75 PP_5348 Transcriptional regulator, LysR family 0.58 6
Shewanella loihica PV-4 0.54 Shew_1722 dethiobiotin synthase (RefSeq) 0.32 Shew_1245 LysR family transcriptional regulator (RefSeq) — —
Shewanella oneidensis MR-1 0.52 SO2737 bioD dethiobiotin synthase (NCBI ptt file) 0.22 SO3757 rbcR rubisco operon transcriptional regulator (NCBI ptt file) — —
Shewanella sp. ANA-3 0.51 Shewana3_2516 bioD dithiobiotin synthetase (RefSeq) 0.22 Shewana3_0835 LysR family transcriptional regulator (RefSeq) — —
Dechlorosoma suillum PS 0.45 Dsui_2884 dethiobiotin synthase 0.30 Dsui_2869 transcriptional regulator low > 51
Lysobacter sp. OAE881 0.42 ABIE51_RS17990 dethiobiotin synthase 0.18 ABIE51_RS00200 LysR family transcriptional regulator low > 62
Shewanella amazonensis SB2B 0.41 Sama_1441 bioD dithiobiotin synthetase (RefSeq) 0.25 Sama_0693 RuBisCo operon transcriptional regulator (RefSeq) — —
Rhodanobacter sp. FW510-T8 0.41 OKGIIK_16455 bioD dethiobiotin synthase 0.17 OKGIIK_13310 lysR LysR family transcriptional regulator low > 52
Rhodanobacter denitrificans FW104-10B01 0.39 LRK54_RS07180 dethiobiotin synthase 0.18 LRK54_RS10595 LysR family transcriptional regulator low > 59
Rhodanobacter denitrificans MT42 0.38 LRK55_RS06915 dethiobiotin synthase 0.18 LRK55_RS10235 LysR family transcriptional regulator low > 63
Hydrogenophaga sp. GW460-11-11-14-LB1 0.37 GFF3994 Dethiobiotin synthetase (EC 6.3.3.3) 0.31 GFF2192 Cys regulon transcriptional activator CysB — —
Variovorax sp. OAS795 0.36 ABID97_RS16255 dethiobiotin synthase 0.31 ABID97_RS24450 LysR family transcriptional regulator — —
Burkholderia phytofirmans PsJN 0.35 BPHYT_RS02155 dithiobiotin synthetase 0.34 BPHYT_RS29890 LysR family transcriptional regulator low > 109
Ralstonia sp. UNC404CL21Col 0.35 ABZR87_RS12345 dethiobiotin synthase 0.18 ABZR87_RS07845 LysR family transcriptional regulator low > 80
Acidovorax sp. GW101-3H11 0.33 Ac3H11_3829 Dethiobiotin synthetase (EC 6.3.3.3) 0.32 Ac3H11_3174 RuBisCO operon transcriptional regulator low > 79
Paraburkholderia graminis OAS925 0.33 ABIE53_000578 dethiobiotin synthetase 0.35 ABIE53_005077 DNA-binding transcriptional LysR family regulator low > 113
Paraburkholderia bryophila 376MFSha3.1 0.31 H281DRAFT_02096 dethiobiotin synthetase 0.34 H281DRAFT_03013 transcriptional regulator, LysR family low > 103
Paraburkholderia sabiae LMG 24235 0.29 QEN71_RS01090 dethiobiotin synthase 0.33 QEN71_RS20425 LysR family transcriptional regulator — —
Cupriavidus basilensis FW507-4G11 0.27 RR42_RS00935 dethiobiotin synthetase 0.31 RR42_RS31340 transcriptional regulator — —
Synechococcus elongatus PCC 7942 0.16 Synpcc7942_0030 bioD dethiobiotin synthase 0.37 Synpcc7942_1310 cmpR ndhF3 operon transcriptional regulator — —
Rhodopseudomonas palustris CGA009 0.12 TX73_015410 dethiobiotin synthase 0.24 TX73_007990 LysR family transcriptional regulator — —

Not shown: 50 genomes with orthologs for Psest_0415 only; 4 genomes with orthologs for Psest_4086 only