| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas simiae WCS417 | 1.0 | PS417_08540 | | RNA helicase | 1.0 | PS417_19695 | | flagellar biosynthesis sigma factor | 0.52 | 16 |
| Pseudomonas fluorescens SBW25 | 0.99 | PFLU_RS08490 | | DEAD/DEAH box helicase | 0.99 | PFLU_RS21660 | | RNA polymerase sigma factor FliA | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.99 | PFLU_RS08490 | | DEAD/DEAH box helicase | 0.99 | PFLU_RS21660 | | RNA polymerase sigma factor FliA | low | > 109 |
| Pseudomonas fluorescens FW300-N1B4 | 0.98 | Pf1N1B4_265 | | DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) | 0.97 | Pf1N1B4_3626 | | RNA polymerase sigma factor for flagellar operon | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.97 | AO356_03110 | | RNA helicase | 0.96 | AO356_03730 | | flagellar biosynthesis sigma factor | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.97 | Pf6N2E2_2450 | | DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) | 0.96 | Pf6N2E2_2573 | | RNA polymerase sigma factor for flagellar operon | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.96 | AO353_19130 | | RNA helicase | 0.97 | AO353_18785 | | flagellar biosynthesis sigma factor | — | — |
| Pseudomonas sp. RS175 | 0.95 | PFR28_00980 | | ATP-dependent RNA helicase DeaD | 0.95 | PFR28_00852 | | RNA polymerase sigma factor FliA | low | > 88 |
| Pseudomonas fluorescens GW456-L13 | 0.95 | PfGW456L13_2247 | | DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) | 0.97 | PfGW456L13_4331 | | RNA polymerase sigma factor for flagellar operon | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.95 | Psyr_3619 | | Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase, N-terminal | 0.95 | Psyr_3437 | | RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.95 | Psyr_3619 | | Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase, N-terminal | 0.95 | Psyr_3437 | | RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG | — | — |
| Pseudomonas putida KT2440 | 0.90 | PP_1868 | | ATP-dependent DEAD-box RNA helicase DeaD | 0.91 | PP_4341 | | RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons | — | — |
| Pseudomonas stutzeri RCH2 | 0.84 | Psest_1804 | | Superfamily II DNA and RNA helicases | 0.82 | Psest_1740 | | RNA polymerase sigma factor, FliA/WhiG family | low | > 67 |
| Pseudomonas sp. S08-1 | 0.82 | OH686_22545 | | DEAD-box ATP-dependent RNA helicase DeaD ( CshA) | 0.84 | OH686_02730 | | RNA polymerase sigma factor for flagellar operon | low | > 80 |
| Rhodanobacter sp. FW510-T8 | 0.46 | OKGIIK_09705 | | ATP-dependent RNA helicase | 0.52 | OKGIIK_02830 | fliA | RNA polymerase sigma factor FliA | low | > 52 |
| Rhodanobacter denitrificans FW104-10B01 | 0.46 | LRK54_RS02650 | | DEAD/DEAH box helicase | 0.52 | LRK54_RS13580 | | RNA polymerase sigma factor FliA | low | > 59 |
| Rhodanobacter denitrificans MT42 | 0.46 | LRK55_RS02405 | | DEAD/DEAH box helicase | 0.52 | LRK55_RS13320 | | RNA polymerase sigma factor FliA | low | > 63 |
| Dyella japonica UNC79MFTsu3.2 | 0.45 | ABZR86_RS08990 | | DEAD/DEAH box helicase | 0.49 | ABZR86_RS20265 | | RNA polymerase sigma factor FliA | low | > 74 |
| Dechlorosoma suillum PS | 0.44 | Dsui_1351 | | DNA/RNA helicase, superfamily II | 0.46 | Dsui_1726 | | RNA polymerase sigma factor, FliA/WhiG family | low | > 51 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.44 | Xcc-8004.1841.1 | | DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) | 0.44 | Xcc-8004.2832.1 | | RNA polymerase sigma factor for flagellar operon | low | > 74 |
| Alteromonas macleodii MIT1002 | 0.43 | MIT1002_00666 | | Cold-shock DEAD box protein A | 0.56 | MIT1002_01103 | | Sigma-F factor | low | > 70 |
| Shewanella loihica PV-4 | 0.42 | Shew_0531 | | DEAD/DEAH box helicase domain-containing protein (RefSeq) | 0.52 | Shew_1383 | fliA | flagellar biosynthesis sigma factor (RefSeq) | low | > 60 |
| Shewanella amazonensis SB2B | 0.42 | Sama_0512 | | ATP-dependent RNA helicase DeaD (RefSeq) | 0.54 | Sama_2280 | fliA | flagellar biosynthesis sigma factor (RefSeq) | low | > 62 |
| Rahnella sp. WP5 | 0.41 | EX31_RS08510 | | DEAD/DEAH family ATP-dependent RNA helicase | 0.42 | EX31_RS09450 | | RNA polymerase sigma factor FliA | 0.48 | 44 |
| Pectobacterium carotovorum WPP14 | 0.41 | HER17_RS18175 | | DEAD/DEAH family ATP-dependent RNA helicase | 0.41 | HER17_RS08355 | | RNA polymerase sigma factor FliA | low | > 75 |
| Pantoea sp. MT58 | 0.41 | IAI47_16990 | | DEAD/DEAH family ATP-dependent RNA helicase | 0.42 | IAI47_08160 | | RNA polymerase sigma factor FliA | low | > 76 |
| Shewanella oneidensis MR-1 | 0.41 | SO4034 | deaD | ATP-dependent RNA helicase DeaD (NCBI ptt file) | 0.52 | SO3210 | fliA | RNA polymerase sigma-27 factor (NCBI ptt file) | 0.37 | 64 |
| Erwinia tracheiphila SCR3 | 0.41 | LU632_RS21030 | | DEAD/DEAH family ATP-dependent RNA helicase | 0.43 | LU632_RS13785 | | RNA polymerase sigma factor FliA | — | — |
| Dickeya dianthicola ME23 | 0.41 | DZA65_RS03270 | | DEAD/DEAH family ATP-dependent RNA helicase | 0.43 | DZA65_RS13835 | | RNA polymerase sigma factor FliA | — | — |
| Dickeya dianthicola 67-19 | 0.41 | HGI48_RS03275 | | DEAD/DEAH family ATP-dependent RNA helicase | 0.43 | HGI48_RS13350 | | RNA polymerase sigma factor FliA | low | > 71 |
| Enterobacter sp. TBS_079 | 0.41 | MPMX20_04066 | | ATP-dependent RNA helicase DeaD | 0.41 | MPMX20_02847 | | RNA polymerase sigma factor FliA | low | > 85 |
| Enterobacter asburiae PDN3 | 0.41 | EX28DRAFT_3211 | | Superfamily II DNA and RNA helicases | 0.41 | EX28DRAFT_0625 | | RNA polymerase sigma factor, FliA/WhiG family | — | — |
| Serratia liquefaciens MT49 | 0.41 | IAI46_01970 | | DEAD/DEAH family ATP-dependent RNA helicase | 0.42 | IAI46_15785 | | RNA polymerase sigma factor FliA | low | > 86 |
| Dickeya dadantii 3937 | 0.40 | DDA3937_RS03100 | | DEAD/DEAH family ATP-dependent RNA helicase | 0.43 | DDA3937_RS13300 | | RNA polymerase sigma factor FliA | low | > 74 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.40 | GFF1504 | | DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) | 0.41 | GFF1690 | | RNA polymerase sigma factor for flagellar operon | low | > 78 |
| Shewanella sp. ANA-3 | 0.40 | Shewana3_3595 | | DEAD/DEAH box helicase domain-containing protein (RefSeq) | 0.52 | Shewana3_1359 | fliA | flagellar biosynthesis sigma factor (RefSeq) | low | > 73 |
| Escherichia coli ECRC62 | 0.39 | BNILDI_01580 | deaD | ATP-dependent RNA helicase DeaD | 0.42 | BNILDI_15190 | fliA | RNA polymerase sigma factor FliA | — | — |
| Escherichia coli BW25113 | 0.39 | b3162 | deaD | inducible ATP-independent RNA helicase (VIMSS) | 0.42 | b1922 | fliA | flagellar biosynthesis; alternative sigma factor 28; regulation of flagellar operons (VIMSS) | low | > 76 |
| Escherichia coli ECOR27 | 0.39 | NOLOHH_09955 | deaD | ATP-dependent RNA helicase DeaD | 0.42 | NOLOHH_16400 | fliA | RNA polymerase sigma factor FliA | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.39 | OHPLBJKB_00538 | | ATP-dependent RNA helicase DeaD | 0.42 | OHPLBJKB_01807 | | RNA polymerase sigma factor FliA | low | > 73 |
| Escherichia fergusonii Becca | 0.39 | EFB2_00661 | | ATP-dependent RNA helicase DeaD | 0.42 | EFB2_02023 | | RNA polymerase sigma factor FliA | low | > 86 |
| Escherichia coli Nissle 1917 | 0.39 | ECOLIN_RS18165 | | ATP-dependent RNA helicase DeaD | 0.42 | ECOLIN_RS10975 | | RNA polymerase sigma factor FliA | low | > 52 |
| Escherichia coli ECRC98 | 0.39 | JDDGAC_21780 | deaD | ATP-dependent RNA helicase DeaD | 0.42 | JDDGAC_00370 | fliA | RNA polymerase sigma factor FliA | — | — |
| Escherichia coli ECRC102 | 0.39 | NIAGMN_15915 | deaD | ATP-dependent RNA helicase DeaD | 0.42 | NIAGMN_02270 | fliA | RNA polymerase sigma factor FliA | — | — |
| Escherichia coli ECRC101 | 0.39 | OKFHMN_18155 | deaD | ATP-dependent RNA helicase DeaD | 0.42 | OKFHMN_25780 | fliA | RNA polymerase sigma factor FliA | — | — |
| Escherichia coli ECRC99 | 0.39 | KEDOAH_09995 | deaD | ATP-dependent RNA helicase DeaD | 0.42 | KEDOAH_02310 | fliA | RNA polymerase sigma factor FliA | — | — |
| Escherichia coli ECRC101 | 0.39 | MCAODC_08675 | deaD | ATP-dependent RNA helicase DeaD | 0.42 | MCAODC_19610 | fliA | RNA polymerase sigma factor FliA | — | — |
| Escherichia coli ECOR38 | 0.39 | HEPCGN_17030 | deaD | ATP-dependent RNA helicase DeaD | 0.42 | HEPCGN_04135 | fliA | RNA polymerase sigma factor FliA | low | > 85 |
| Vibrio cholerae E7946 ATCC 55056 | 0.37 | CSW01_18185 | | DEAD/DEAH box family ATP-dependent RNA helicase | 0.51 | CSW01_10335 | | RNA polymerase sigma factor FliA | low | > 62 |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.33 | DVU3310 | deaD | ATP-dependent RNA helicase, DEAD/DEAH family (TIGR) | 0.30 | DVU3229 | fliA | RNA polymerase sigma factor for flagellar operon FliA (TIGR) | low | > 55 |
| Desulfovibrio vulgaris Miyazaki F | 0.32 | DvMF_2125 | | DEAD/DEAH box helicase domain protein (RefSeq) | 0.30 | DvMF_2011 | | RNA polymerase, sigma 28 subunit, FliA/WhiG (RefSeq) | — | — |
Not shown: 17 genomes with orthologs for PS417_08540 only; 18 genomes with orthologs for PS417_19695 only