Conservation of cofitness between PS417_08300 and PS417_16535 in Pseudomonas simiae WCS417

56 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_08300 histidine kinase 1.0 PS417_16535 NUDIX hydrolase 0.19 16
Pseudomonas fluorescens SBW25-INTG 0.93 PFLU_RS08240 sensor histidine kinase KdpD 0.96 PFLU_RS18575 NUDIX hydrolase low > 109
Pseudomonas fluorescens SBW25 0.93 PFLU_RS08240 sensor histidine kinase KdpD 0.96 PFLU_RS18575 NUDIX hydrolase low > 109
Pseudomonas fluorescens GW456-L13 0.87 PfGW456L13_2204 Osmosensitive K+ channel histidine kinase KdpD (EC 2.7.3.-) 0.85 PfGW456L13_2640 Nudix-like NDP and NTP phosphohydrolase YmfB low > 87
Pseudomonas fluorescens FW300-N1B4 0.87 Pf1N1B4_312 Osmosensitive K+ channel histidine kinase KdpD (EC 2.7.3.-) 0.83 Pf1N1B4_4049 Nudix-like NDP and NTP phosphohydrolase YmfB low > 87
Pseudomonas fluorescens FW300-N2E3 0.86 AO353_18930 histidine kinase 0.86 AO353_27700 NUDIX hydrolase low > 101
Pseudomonas fluorescens FW300-N2C3 0.85 AO356_03300 histidine kinase 0.86 AO356_22115 NUDIX hydrolase low > 104
Pseudomonas fluorescens FW300-N2E2 0.85 Pf6N2E2_2491 Osmosensitive K+ channel histidine kinase KdpD (EC 2.7.3.-) 0.86 Pf6N2E2_287 Nudix-like NDP and NTP phosphohydrolase YmfB low > 103
Pseudomonas sp. RS175 0.84 PFR28_00942 Sensor protein KdpD 0.86 PFR28_02618 Phosphatase NudJ low > 88
Pseudomonas syringae pv. syringae B728a 0.82 Psyr_2050 ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Osmosensitive K+ channel His kinase sensor:UspA 0.79 Psyr_3189 NUDIX hydrolase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.82 Psyr_2050 ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Osmosensitive K+ channel His kinase sensor:UspA 0.79 Psyr_3189 NUDIX hydrolase low > 86
Pseudomonas putida KT2440 0.78 PP_4158 sensor protein 0.70 PP_4013 MutT/nudix family protein low > 96
Pseudomonas sp. S08-1 0.70 OH686_01890 Osmosensitive K+ channel histidine kinase KdpD 0.72 OH686_00215 Nudix-like NDP and NTP phosphohydrolase NudJ 0.41 47
Dyella japonica UNC79MFTsu3.2 0.44 ABZR86_RS13210 sensor histidine kinase KdpD 0.46 ABZR86_RS02190 NUDIX hydrolase low > 74
Hydrogenophaga sp. GW460-11-11-14-LB1 0.42 GFF4474 Osmosensitive K+ channel histidine kinase KdpD (EC 2.7.3.-) 0.38 GFF2602 NTP pyrophosphohydrolases including oxidative damage repair enzymes low > 90
Xanthomonas campestris pv. campestris strain 8004 0.41 Xcc-8004.4379.1 Osmosensitive K+ channel histidine kinase KdpD (EC 2.7.3.-) 0.53 Xcc-8004.2757.1 Nudix-like NDP and NTP phosphohydrolase YmfB low > 74
Acinetobacter radioresistens SK82 0.36 MPMX26_02241 Sensor protein KdpD 0.44 MPMX26_01049 Phosphatase NudJ — —
Paraburkholderia sabiae LMG 24235 0.30 QEN71_RS24345 DUF4118 domain-containing protein 0.40 QEN71_RS26735 NUDIX hydrolase low > 153
Dechlorosoma suillum PS 0.30 Dsui_0272 osmosensitive K+ channel histidine kinase 0.44 Dsui_3338 Zn-finger containing NTP pyrophosphohydrolase low > 51
Ralstonia solanacearum GMI1000 0.29 RS_RS16960 sensor histidine kinase KdpD 0.42 RS_RS13630 NUDIX hydrolase low > 80
Ralstonia solanacearum PSI07 0.29 RPSI07_RS08140 sensor histidine kinase KdpD 0.42 RPSI07_RS11560 NUDIX hydrolase low > 81
Cupriavidus basilensis FW507-4G11 0.29 RR42_RS00495 histidine kinase 0.37 RR42_RS17470 NUDIX hydrolase low > 128
Ralstonia solanacearum IBSBF1503 0.29 RALBFv3_RS09130 sensor histidine kinase KdpD 0.41 RALBFv3_RS05740 NUDIX hydrolase low > 76
Ralstonia solanacearum UW163 0.29 UW163_RS04465 sensor histidine kinase KdpD 0.41 UW163_RS07885 NUDIX hydrolase — —
Dickeya dianthicola 67-19 0.29 HGI48_RS06415 two-component system sensor histidine kinase KdpD 0.27 HGI48_RS11525 NUDIX hydrolase low > 71
Escherichia coli ECOR38 0.29 HEPCGN_01160 kdpD two-component system sensor histidine kinase KdpD 0.31 HEPCGN_24225 nudJ phosphatase NudJ low > 87
Escherichia coli Nissle 1917 0.29 ECOLIN_RS03755 two-component system sensor histidine kinase KdpD 0.31 ECOLIN_RS06630 phosphatase NudJ — —
Escherichia fergusonii Becca 0.29 EFB2_03401 Sensor protein KdpD 0.31 EFB2_02841 Phosphatase NudJ low > 86
Pectobacterium carotovorum WPP14 0.29 HER17_RS15045 two-component system sensor histidine kinase KdpD 0.26 HER17_RS11620 NUDIX hydrolase low > 75
Escherichia coli BW25113 0.29 b0695 kdpD fused sensory histidine kinase in two-component regulatory system with KdpE: signal sensing protein (NCBI) 0.31 b1134 ymfB bifunctional thiamin pyrimidine pyrophosphate hydrolase/ thiamin pyrophosphate hydrolase (NCBI) low > 76
Enterobacter asburiae PDN3 0.28 EX28DRAFT_2283 Osmosensitive K+ channel histidine kinase 0.28 EX28DRAFT_1796 ADP-ribose pyrophosphatase low > 76
Escherichia coli BL21 0.28 ECD_00652 fused sensory histidine kinase in two-component regulatory system with KdpE: signal sensing protein 0.30 ECD_01132 bifunctional thiamine pyrimidine pyrophosphate hydrolase and thiamine pyrophosphate hydrolase — —
Serratia liquefaciens MT49 0.28 IAI46_06165 two-component system sensor histidine kinase KdbD 0.31 IAI46_10445 NUDIX hydrolase low > 86
Enterobacter sp. TBS_079 0.28 MPMX20_01338 Sensor protein KdpD 0.28 MPMX20_01818 Phosphatase NudJ low > 85
Escherichia coli ECOR27 0.28 NOLOHH_23455 kdpD two-component system sensor histidine kinase KdpD 0.31 NOLOHH_20895 nudJ phosphatase NudJ low > 75
Rahnella sp. WP5 0.28 EX31_RS23335 two-component system sensor histidine kinase KdbD 0.30 EX31_RS24580 NUDIX hydrolase low > 89
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.28 GFF4607 Osmosensitive K+ channel histidine kinase KdpD (EC 2.7.3.-) 0.27 GFF3419 Nudix-like NDP and NTP phosphohydrolase YmfB low > 78
Dickeya dianthicola ME23 0.28 DZA65_RS06760 two-component system sensor histidine kinase KdbD 0.27 DZA65_RS11860 NUDIX hydrolase low > 75
Escherichia coli ECRC98 0.28 JDDGAC_10725 kdpD two-component system sensor histidine kinase KdpD 0.31 JDDGAC_06615 nudJ phosphatase NudJ low > 86
Escherichia coli ECRC102 0.28 NIAGMN_05130 kdpD two-component system sensor histidine kinase KdpD 0.31 NIAGMN_24895 nudJ phosphatase NudJ — —
Escherichia coli ECRC99 0.28 KEDOAH_20895 kdpD two-component system sensor histidine kinase KdpD 0.31 KEDOAH_24835 nudJ phosphatase NudJ — —
Escherichia coli ECRC101 0.28 MCAODC_26290 kdpD two-component system sensor histidine kinase KdpD 0.31 MCAODC_22335 nudJ phosphatase NudJ low > 87
Escherichia coli ECRC100 0.28 OKFHMN_07075 kdpD two-component system sensor histidine kinase KdpD 0.31 OKFHMN_00750 nudJ phosphatase NudJ low > 80
Escherichia coli HS(pFamp)R (ATCC 700891) 0.28 OHPLBJKB_03022 Sensor protein KdpD 0.31 OHPLBJKB_02534 Phosphatase NudJ low > 73
Escherichia coli ECRC62 0.28 BNILDI_21460 kdpD two-component system sensor histidine kinase KdpD 0.31 BNILDI_19060 nudJ phosphatase NudJ low > 75
Paraburkholderia bryophila 376MFSha3.1 0.28 H281DRAFT_04532 two-component system, OmpR family, sensor histidine kinase KdpD 0.42 H281DRAFT_04652 ADP-ribose pyrophosphatase YjhB, NUDIX family low > 103
Acidovorax sp. GW101-3H11 0.28 Ac3H11_2408 Osmosensitive K+ channel histidine kinase KdpD (EC 2.7.3.-) 0.43 Ac3H11_4361 NTP pyrophosphohydrolases including oxidative damage repair enzymes low > 79
Dickeya dadantii 3937 0.28 DDA3937_RS06370 two-component system sensor histidine kinase KdpD 0.29 DDA3937_RS11480 NUDIX hydrolase low > 74
Ralstonia sp. UNC404CL21Col 0.28 ABZR87_RS04525 sensor histidine kinase KdpD 0.42 ABZR87_RS01335 NUDIX hydrolase low > 80
Herbaspirillum seropedicae SmR1 0.28 HSERO_RS18855 sensor protein KdpD 0.45 HSERO_RS03475 NUDIX hydrolase low > 78
Burkholderia phytofirmans PsJN 0.28 BPHYT_RS06460 histidine kinase 0.42 BPHYT_RS03365 NUDIX hydrolase low > 109
Klebsiella michiganensis M5al 0.28 BWI76_RS08305 two-component sensor histidine kinase 0.26 BWI76_RS11320 NUDIX hydrolase — —
Paraburkholderia graminis OAS925 0.27 ABIE53_001556 two-component system sensor histidine kinase KdpD 0.42 ABIE53_000811 8-oxo-dGTP pyrophosphatase MutT (NUDIX family) low > 113
Pantoea sp. MT58 0.27 IAI47_01250 two-component system sensor histidine kinase KdbD 0.28 IAI47_11910 NUDIX hydrolase low > 76
Variovorax sp. SCN45 0.26 GFF3520 Osmosensitive K+ channel histidine kinase KdpD 0.42 GFF4911 Nudix-like NDP and NTP phosphohydrolase NudJ low > 127
Erwinia tracheiphila SCR3 0.26 LU632_RS00800 kdpD two-component system sensor histidine kinase KdpD 0.33 LU632_RS14570 NUDIX hydrolase low > 74
Variovorax sp. OAS795 0.26 ABID97_RS01010 DUF4118 domain-containing protein 0.37 ABID97_RS04420 NUDIX hydrolase low > 91

Not shown: 14 genomes with orthologs for PS417_08300 only; 11 genomes with orthologs for PS417_16535 only