| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Marinobacter adhaerens HP15 | 1.0 | HP15_2116 | | PP-loop domain protein | 1.0 | HP15_2957 | | sugar ABC transporter, permease protein | 0.48 | 4 |
| Pantoea sp. MT58 | 0.66 | IAI47_09475 | | tRNA 2-thiocytidine(32) synthetase TtcA | 0.20 | IAI47_17540 | | sugar ABC transporter permease | low | > 76 |
| Escherichia coli ECRC101 | 0.65 | MCAODC_16100 | ttcA | tRNA 2-thiocytidine(32) synthetase TtcA | 0.15 | MCAODC_07305 | ugpA | sn-glycerol-3-phosphate ABC transporter permease UgpA | — | — |
| Escherichia coli ECRC99 | 0.65 | KEDOAH_26600 | ttcA | tRNA 2-thiocytidine(32) synthetase TtcA | 0.15 | KEDOAH_11365 | ugpA | sn-glycerol-3-phosphate ABC transporter permease UgpA | — | — |
| Escherichia coli ECRC62 | 0.65 | BNILDI_18020 | ttcA | tRNA 2-thiocytidine(32) synthetase TtcA | 0.15 | BNILDI_02940 | ugpA | sn-glycerol-3-phosphate ABC transporter permease UgpA | — | — |
| Escherichia coli ECOR38 | 0.65 | HEPCGN_26005 | ttcA | tRNA 2-thiocytidine(32) synthetase TtcA | 0.15 | HEPCGN_15595 | ugpA | sn-glycerol-3-phosphate ABC transporter permease UgpA | low | > 85 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.65 | OHPLBJKB_02337 | | tRNA-cytidine(32) 2-sulfurtransferase | 0.15 | OHPLBJKB_00251 | | sn-glycerol-3-phosphate transport system permease protein UgpA | low | > 73 |
| Escherichia coli Nissle 1917 | 0.65 | ECOLIN_RS08065 | | tRNA 2-thiocytidine(32) synthetase TtcA | 0.15 | ECOLIN_RS19740 | | sn-glycerol-3-phosphate ABC transporter permease UgpA | — | — |
| Escherichia coli ECRC101 | 0.65 | OKFHMN_02155 | ttcA | tRNA 2-thiocytidine(32) synthetase TtcA | 0.15 | OKFHMN_16775 | ugpA | sn-glycerol-3-phosphate ABC transporter permease UgpA | — | — |
| Klebsiella michiganensis M5al | 0.65 | BWI76_RS12710 | | tRNA 2-thiocytidine(32) synthetase TtcA | 0.15 | BWI76_RS26300 | | glycerol-3-phosphate transporter permease | low | > 92 |
| Dickeya dadantii 3937 | 0.65 | DDA3937_RS12330 | | tRNA 2-thiocytidine(32) synthetase TtcA | 0.16 | DDA3937_RS21025 | | sugar ABC transporter permease | low | > 74 |
| Escherichia coli ECRC102 | 0.65 | NIAGMN_26325 | ttcA | tRNA 2-thiocytidine(32) synthetase TtcA | 0.15 | NIAGMN_14545 | ugpA | sn-glycerol-3-phosphate ABC transporter permease UgpA | — | — |
| Escherichia coli BL21 | 0.65 | ECD_01321 | | tRNA s(2)C32 thioltransferase, iron sulfur cluster protein | 0.15 | ECD_03301 | | sn-glycerol-3-phosphate ABC transporter permease | low | > 60 |
| Escherichia coli ECOR27 | 0.65 | NOLOHH_19870 | ttcA | tRNA 2-thiocytidine(32) synthetase TtcA | 0.15 | NOLOHH_08565 | ugpA | sn-glycerol-3-phosphate ABC transporter permease UgpA | — | — |
| Escherichia fergusonii Becca | 0.65 | EFB2_02583 | | tRNA-cytidine(32) 2-sulfurtransferase | 0.15 | EFB2_00370 | | sn-glycerol-3-phosphate transport system permease protein UgpA | low | > 86 |
| Escherichia coli BW25113 | 0.65 | b1344 | ydaO | predicted C32 tRNA thiolase (NCBI) | 0.15 | b3452 | ugpA | glycerol-3-phosphate transporter subunit (NCBI) | low | > 76 |
| Pectobacterium carotovorum WPP14 | 0.65 | HER17_RS09605 | | tRNA 2-thiocytidine(32) synthetase TtcA | 0.16 | HER17_RS03520 | | sugar ABC transporter permease | low | > 75 |
| Escherichia coli ECRC98 | 0.65 | JDDGAC_04715 | ttcA | tRNA 2-thiocytidine(32) synthetase TtcA | 0.15 | JDDGAC_20405 | ugpA | sn-glycerol-3-phosphate ABC transporter permease UgpA | — | — |
| Vibrio cholerae E7946 ATCC 55056 | 0.65 | CSW01_07180 | | tRNA 2-thiocytidine(32) synthetase TtcA | 0.11 | CSW01_07790 | | glycerol-3-phosphate transporter permease | low | > 62 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.65 | GFF2648 | | tRNA(Cytosine32)-2-thiocytidine synthetase | 0.16 | GFF556 | | Glycerol-3-phosphate ABC transporter, permease protein UgpA (TC 3.A.1.1.3) | low | > 78 |
| Pseudomonas stutzeri RCH2 | 0.65 | Psest_3033 | | Predicted ATPase of the PP-loop superfamily implicated in cell cycle control | 0.72 | Psest_1897 | | ABC-type sugar transport systems, permease components | low | > 67 |
| Enterobacter asburiae PDN3 | 0.65 | EX28DRAFT_1007 | | Predicted ATPase of the PP-loop superfamily implicated in cell cycle control | 0.16 | EX28DRAFT_4284 | | ABC-type sugar transport systems, permease components | low | > 76 |
| Serratia liquefaciens MT49 | 0.65 | IAI46_13420 | | tRNA 2-thiocytidine(32) synthetase TtcA | 0.15 | IAI46_00995 | | sn-glycerol-3-phosphate ABC transporter permease UgpA | low | > 86 |
| Enterobacter sp. TBS_079 | 0.64 | MPMX20_02440 | | tRNA-cytidine(32) 2-sulfurtransferase | 0.16 | MPMX20_04328 | | sn-glycerol-3-phosphate transport system permease protein UgpA | low | > 85 |
| Pseudomonas sp. S08-1 | 0.64 | OH686_05145 | | tRNA-(cytosine32)-2-thiocytidine synthetase TtcA | 0.73 | OH686_02465 | | Glucose ABC transport system, inner membrane component 1 | low | > 80 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.63 | Psyr_3705 | | conserved hypothetical protein | 0.74 | Psyr_1114 | | glucose ABC transporter membrane protein | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.63 | Psyr_3705 | | conserved hypothetical protein | 0.74 | Psyr_1114 | | glucose ABC transporter membrane protein | low | > 86 |
| Pseudomonas fluorescens FW300-N1B4 | 0.63 | Pf1N1B4_3491 | | tRNA(Cytosine32)-2-thiocytidine synthetase | 0.72 | Pf1N1B4_595 | | Glucose ABC transport system, inner membrane component 1 | low | > 87 |
| Pseudomonas putida KT2440 | 0.63 | PP_1641 | | tRNA 2-thiocytidine biosynthesis protein TtcA | 0.71 | PP_1016 | | mannose/glucose ABC transporter, permease protein | low | > 96 |
| Pseudomonas sp. RS175 | 0.63 | PFR28_03236 | | tRNA-cytidine(32) 2-sulfurtransferase | 0.73 | PFR28_00567 | | Melibiose/raffinose/stachyose import permease protein MelD | low | > 88 |
| Pseudomonas fluorescens FW300-N2E3 | 0.63 | AO353_02780 | | tRNA 2-thiocytidine biosynthesis protein TtcA | 0.72 | AO353_03390 | | sugar ABC transporter permease | low | > 101 |
| Pseudomonas simiae WCS417 | 0.63 | PS417_16415 | | tRNA 2-thiocytidine biosynthesis protein TtcA | 0.72 | PS417_22140 | | glucose/xylose ABC transporter, permease component 2 (from data) | low | > 88 |
| Pseudomonas fluorescens FW300-N2E2 | 0.63 | Pf6N2E2_5711 | | tRNA(Cytosine32)-2-thiocytidine synthetase | 0.73 | Pf6N2E2_2891 | | Glucose ABC transport system, inner membrane component 1 | low | > 103 |
| Pseudomonas fluorescens FW300-N2C3 | 0.62 | AO356_19000 | | tRNA 2-thiocytidine biosynthesis protein TtcA | 0.73 | AO356_05190 | | sugar ABC transporter permease | low | > 104 |
| Erwinia tracheiphila SCR3 | 0.62 | LU632_RS12165 | ttcA | tRNA 2-thiocytidine(32) synthetase TtcA | 0.15 | LU632_RS00815 | | sugar ABC transporter permease | low | > 74 |
| Pseudomonas fluorescens GW456-L13 | 0.62 | PfGW456L13_2020 | | tRNA(Cytosine32)-2-thiocytidine synthetase | 0.72 | PfGW456L13_1895 | | ABC transporter for D-Galactose and D-Glucose, permease component 1 (from data) | low | > 87 |
| Pseudomonas fluorescens SBW25 | 0.62 | PFLU_RS18455 | | tRNA 2-thiocytidine(32) synthetase TtcA | 0.72 | PFLU_RS23755 | | sugar ABC transporter permease | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.62 | PFLU_RS18455 | | tRNA 2-thiocytidine(32) synthetase TtcA | 0.72 | PFLU_RS23755 | | sugar ABC transporter permease | low | > 109 |
| Paraburkholderia graminis OAS925 | 0.60 | ABIE53_000036 | | tRNA 2-thiocytidine biosynthesis protein TtcA | 0.59 | ABIE53_001278 | | glucose/mannose transport system permease protein | low | > 113 |
| Paraburkholderia sabiae LMG 24235 | 0.60 | QEN71_RS28595 | | tRNA 2-thiocytidine(32) synthetase TtcA | 0.60 | QEN71_RS03340 | | sugar ABC transporter permease | low | > 153 |
| Variovorax sp. OAS795 | 0.60 | ABID97_RS06505 | | tRNA 2-thiocytidine(32) synthetase TtcA | 0.15 | ABID97_RS07225 | | sn-glycerol-3-phosphate ABC transporter permease UgpA | low | > 91 |
| Acidovorax sp. GW101-3H11 | 0.60 | Ac3H11_1817 | | tRNA(Cytosine32)-2-thiocytidine synthetase | 0.64 | Ac3H11_2064 | | glucose ABC transporter, permease component 1 (from data) | low | > 79 |
| Variovorax sp. SCN45 | 0.60 | GFF7310 | | tRNA-(cytosine32)-2-thiocytidine synthetase TtcA | 0.17 | GFF2536 | | Glycerol-3-phosphate ABC transporter, permease protein UgpA (TC 3.A.1.1.3) | low | > 127 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.59 | H281DRAFT_05824 | | tRNA s(2)C-32 sulfurtransferase | 0.58 | H281DRAFT_00167 | | carbohydrate ABC transporter membrane protein 1, CUT1 family | low | > 103 |
| Lysobacter sp. OAE881 | 0.59 | ABIE51_RS01305 | | tRNA 2-thiocytidine(32) synthetase TtcA | 0.14 | ABIE51_RS08820 | | sugar ABC transporter permease | low | > 62 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.57 | GFF1658 | | tRNA(Cytosine32)-2-thiocytidine synthetase | 0.17 | GFF1260 | | Glycerol-3-phosphate ABC transporter, permease protein UgpA (TC 3.A.1.1.3) | low | > 90 |
| Rhodanobacter denitrificans MT42 | 0.57 | LRK55_RS10320 | | tRNA 2-thiocytidine(32) synthetase TtcA | 0.13 | LRK55_RS08415 | | sugar ABC transporter permease | low | > 63 |
| Rhodanobacter denitrificans FW104-10B01 | 0.56 | LRK54_RS10680 | | tRNA 2-thiocytidine(32) synthetase TtcA | 0.13 | LRK54_RS08650 | | sugar ABC transporter permease | low | > 59 |
| Herbaspirillum seropedicae SmR1 | 0.56 | HSERO_RS22035 | | tRNA 2-thiocytidine biosynthesis protein TtcA | 0.21 | HSERO_RS18950 | | glycerol-3-phosphate transporter permease | low | > 78 |
| Castellaniella sp019104865 MT123 | 0.55 | ABCV34_RS10450 | | tRNA 2-thiocytidine(32) synthetase TtcA | 0.15 | ABCV34_RS03600 | | sn-glycerol-3-phosphate ABC transporter permease UgpA | low | > 48 |
| Sinorhizobium meliloti 1021 | 0.45 | SMc00534 | | C32 tRNA thiolase | 0.57 | SMc04395 | | ABC transporter permease | low | > 103 |
| Rhizobium sp. OAE497 | 0.44 | ABIE40_RS10230 | | tRNA 2-thiocytidine(32) synthetase TtcA | 0.54 | ABIE40_RS17185 | | sugar ABC transporter permease | low | > 107 |
| Agrobacterium fabrum C58 | 0.43 | Atu1858 | | hypothetical protein | 0.40 | Atu3351 | | sugar ABC transporter permease | low | > 89 |
| Phaeobacter inhibens DSM 17395 | 0.43 | PGA1_c02110 | | tRNA 2-thiocytidine biosynthesis protein TtcA | 0.42 | PGA1_c19490 | | ABC transporter, inner-membrane protein | low | > 62 |
Not shown: 20 genomes with orthologs for HP15_2116 only; 15 genomes with orthologs for HP15_2957 only