Conservation of cofitness between GFF4401 and GFF1977 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

56 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 1.0 GFF4401 Cys-tRNA(Pro) deacylase YbaK 1.0 GFF1977 Manganese transport protein MntH 0.40 19
Klebsiella michiganensis M5al 0.93 BWI76_RS06870 aminoacyl-tRNA deacylase 0.89 BWI76_RS20535 manganese transporter MntH — —
Enterobacter sp. TBS_079 0.92 MPMX20_01082 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.91 MPMX20_03286 Divalent metal cation transporter MntH low > 85
Enterobacter asburiae PDN3 0.91 EX28DRAFT_2477 Cys-tRNA(Pro) deacylase 0.92 EX28DRAFT_0232 NRAMP (natural resistance-associated macrophage protein) metal ion transporters low > 76
Escherichia coli Nissle 1917 0.91 ECOLIN_RS02850 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.94 ECOLIN_RS13755 Nramp family divalent metal transporter — —
Escherichia fergusonii Becca 0.91 EFB2_03577 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.94 EFB2_01483 Divalent metal cation transporter MntH low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.91 OHPLBJKB_03193 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.94 OHPLBJKB_01330 Divalent metal cation transporter MntH low > 73
Escherichia coli BL21 0.91 ECD_00432 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase 0.94 ECD_02301 manganese/divalent cation transporter low > 61
Escherichia coli BW25113 0.91 b0481 ybaK hypothetical protein (NCBI) 0.94 b2392 mntH manganese transport protein MntH (NCBI) low > 76
Escherichia coli ECOR38 0.91 HEPCGN_06725 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.94 HEPCGN_21515 mntH Mn(2+) uptake NRAMP transporter MntH low > 87
Escherichia coli ECRC62 0.91 BNILDI_22455 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.94 BNILDI_12845 mntH Mn(2+) uptake NRAMP transporter MntH low > 75
Escherichia coli ECOR27 0.91 NOLOHH_01035 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.94 NOLOHH_13995 mntH Mn(2+) uptake NRAMP transporter MntH low > 75
Escherichia coli ECRC101 0.90 MCAODC_27325 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.94 MCAODC_12840 mntH Mn(2+) uptake NRAMP transporter MntH low > 87
Escherichia coli ECRC100 0.90 OKFHMN_08105 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.94 OKFHMN_22310 mntH Mn(2+) uptake NRAMP transporter MntH low > 80
Escherichia coli ECRC99 0.90 KEDOAH_19865 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.94 KEDOAH_05910 mntH Mn(2+) uptake NRAMP transporter MntH — —
Escherichia coli ECRC98 0.90 JDDGAC_11750 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.94 JDDGAC_26275 mntH Mn(2+) uptake NRAMP transporter MntH low > 86
Escherichia coli ECRC102 0.90 NIAGMN_06155 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.94 NIAGMN_20085 mntH Mn(2+) uptake NRAMP transporter MntH — —
Serratia liquefaciens MT49 0.79 IAI46_05300 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.79 IAI46_18255 Nramp family divalent metal transporter low > 86
Pectobacterium carotovorum WPP14 0.79 HER17_RS15635 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.80 HER17_RS17405 Nramp family divalent metal transporter low > 75
Rahnella sp. WP5 0.78 EX31_RS22565 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.79 EX31_RS20075 Mn(2+) uptake NRAMP transporter MntH low > 89
Pantoea sp. MT58 0.76 IAI47_14410 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.79 IAI47_05535 Nramp family divalent metal transporter low > 76
Dickeya dadantii 3937 0.69 DDA3937_RS05835 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.81 DDA3937_RS04340 Nramp family divalent metal transporter low > 74
Erwinia tracheiphila SCR3 0.69 LU632_RS15310 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.73 LU632_RS06525 Nramp family divalent metal transporter low > 74
Dickeya dianthicola ME23 0.62 DZA65_RS06215 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.81 DZA65_RS04255 divalent metal cation transporter low > 75
Dickeya dianthicola 67-19 0.62 HGI48_RS05880 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.81 HGI48_RS04335 Nramp family divalent metal transporter low > 71
Pseudomonas syringae pv. syringae B728a ΔmexB 0.55 Psyr_3903 Conserved hypothetical protein 11 0.36 Psyr_2305 Natural resistance-associated macrophage protein low > 86
Pseudomonas syringae pv. syringae B728a 0.55 Psyr_3903 Conserved hypothetical protein 11 0.36 Psyr_2305 Natural resistance-associated macrophage protein low > 86
Pseudomonas simiae WCS417 0.55 PS417_05585 hypothetical protein 0.36 PS417_11460 divalent metal cation transporter MntH low > 88
Pseudomonas fluorescens SBW25-INTG 0.55 PFLU_RS05670 Cys-tRNA(Pro) deacylase 0.35 PFLU_RS12040 divalent metal cation transporter low > 109
Pseudomonas fluorescens SBW25 0.55 PFLU_RS05670 Cys-tRNA(Pro) deacylase 0.35 PFLU_RS12040 divalent metal cation transporter low > 109
Desulfovibrio vulgaris Miyazaki F 0.54 DvMF_2065 ybaK/ebsC protein (RefSeq) 0.23 DvMF_0379 natural resistance-associated macrophage protein (RefSeq) low > 51
Alteromonas macleodii MIT1002 0.50 MIT1002_01641 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.16 MIT1002_03176 Divalent metal cation transporter MntH low > 70
Rhizobium sp. OAE497 0.36 ABIE40_RS01230 Cys-tRNA(Pro) deacylase 0.35 ABIE40_RS05385 Nramp family divalent metal transporter low > 107
Bifidobacterium breve UCC2003 0.35 BBR_RS16795 Cys-tRNA(Pro) deacylase 0.35 BBR_RS12535 divalent metal cation transporter MntH low > 34
Azospirillum sp. SherDot2 0.34 MPMX19_02507 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.38 MPMX19_03690 Divalent metal cation transporter MntH low > 112
Agrobacterium fabrum C58 0.33 Atu0275 hypothetical protein 0.37 Atu1736 manganese transport protein — —
Rhodopseudomonas palustris CGA009 0.33 TX73_022270 Cys-tRNA(Pro) deacylase 0.36 TX73_014020 Nramp family divalent metal transporter low > 86
Sinorhizobium meliloti 1021 0.32 SMc00385 hypothetical protein 0.11 SMa1115 Mn2+/Fe2+ transporter NRAMP family low > 103
Parabacteroides merdae CL09T00C40 0.32 HMPREF1078_RS02420 Cys-tRNA(Pro) deacylase 0.23 HMPREF1078_RS08610 Nramp family divalent metal transporter low > 61
Bacteroides thetaiotaomicron VPI-5482 0.32 BT0579 putative transcription regulator (NCBI ptt file) 0.24 BT0629 Mn2+ and Fe2+ transport protein (NCBI ptt file) — —
Phocaeicola vulgatus CL09T03C04 0.31 HMPREF1058_RS01730 Cys-tRNA(Pro) deacylase 0.23 HMPREF1058_RS17790 Nramp family divalent metal transporter low > 67
Phocaeicola dorei CL03T12C01 0.31 ABI39_RS15335 Cys-tRNA(Pro) deacylase 0.24 ABI39_RS14005 Nramp family divalent metal transporter low > 72
Cupriavidus basilensis FW507-4G11 0.30 RR42_RS03340 membrane protein 0.29 RR42_RS16785 manganese transporter low > 128
Paraburkholderia graminis OAS925 0.29 ABIE53_003359 Cys-tRNA(Pro) deacylase 0.32 ABIE53_002372 manganese transport protein low > 113
Ralstonia sp. UNC404CL21Col 0.28 ABZR87_RS00800 Cys-tRNA(Pro) deacylase 0.41 ABZR87_RS21390 Nramp family divalent metal transporter low > 80
Paraburkholderia sabiae LMG 24235 0.28 QEN71_RS02765 Cys-tRNA(Pro) deacylase 0.34 QEN71_RS20115 Nramp family divalent metal transporter low > 153
Xanthomonas campestris pv. campestris strain 8004 0.28 Xcc-8004.4192.1 Cys-tRNA(Pro) deacylase YbaK 0.34 Xcc-8004.2406.1 Manganese transport protein MntH low > 74
Bacteroides stercoris CC31F 0.28 HMPREF1181_RS15180 Cys-tRNA(Pro) deacylase 0.24 HMPREF1181_RS16610 Nramp family divalent metal transporter low > 56
Ralstonia solanacearum UW163 0.28 UW163_RS08480 Cys-tRNA(Pro) deacylase 0.36 UW163_RS22295 divalent metal cation transporter — —
Ralstonia solanacearum IBSBF1503 0.28 RALBFv3_RS05145 Cys-tRNA(Pro) deacylase 0.36 RALBFv3_RS21155 divalent metal cation transporter low > 76
Ralstonia solanacearum PSI07 0.27 RPSI07_RS12155 Cys-tRNA(Pro) deacylase 0.36 RPSI07_RS01990 divalent metal cation transporter low > 81
Paraburkholderia bryophila 376MFSha3.1 0.27 H281DRAFT_04124 Cys-tRNA(Pro) deacylase 0.35 H281DRAFT_03197 manganese transport protein low > 103
Burkholderia phytofirmans PsJN 0.27 BPHYT_RS15940 membrane protein 0.40 BPHYT_RS05140 manganese transporter low > 109
Variovorax sp. OAS795 0.26 ABID97_RS21705 aminoacyl-tRNA deacylase 0.10 ABID97_RS22130 divalent metal cation transporter low > 91
Herbaspirillum seropedicae SmR1 0.26 HSERO_RS04270 membrane protein 0.39 HSERO_RS10500 manganese transporter low > 78
Ralstonia solanacearum GMI1000 0.26 RS_RS12760 Cys-tRNA(Pro) deacylase 0.36 RS_RS19660 divalent metal cation transporter low > 80
Variovorax sp. SCN45 0.25 GFF3103 Cys-tRNA(Pro) deacylase YbaK 0.36 GFF7172 Manganese transport protein MntH low > 127

Not shown: 27 genomes with orthologs for GFF4401 only; 7 genomes with orthologs for GFF1977 only