Conservation of cofitness between Psest_3803 and Psest_1911 in Pseudomonas stutzeri RCH2

47 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas stutzeri RCH2 1.0 Psest_3803 DNA repair protein radc 1.0 Psest_1911 spermidine synthase 0.21 9
Pseudomonas fluorescens FW300-N2E3 0.86 AO353_09220 hypothetical protein 0.83 AO353_02195 spermidine synthase low > 101
Pseudomonas sp. S08-1 0.86 OH686_13620 UPF0758 family protein 0.84 OH686_03215 spermidine synthase low > 80
Pseudomonas syringae pv. syringae B728a 0.78 Psyr_0222 DNA replication and repair protein RadC 0.83 Psyr_1864 spermidine synthase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.78 Psyr_0222 DNA replication and repair protein RadC 0.83 Psyr_1864 spermidine synthase low > 86
Pseudomonas fluorescens GW456-L13 0.78 PfGW456L13_798 DNA repair protein RadC 0.82 PfGW456L13_4155 Spermidine synthase (EC 2.5.1.16) low > 87
Shewanella amazonensis SB2B 0.60 Sama_0327 radC DNA repair protein RadC (RefSeq) 0.61 Sama_1964 spermidine synthase (RefSeq) low > 62
Rhodanobacter denitrificans MT42 0.59 LRK55_RS08695 DNA repair protein RadC 0.30 LRK55_RS08665 polyamine aminopropyltransferase — —
Kangiella aquimarina DSM 16071 0.59 B158DRAFT_0781 DNA repair protein radc 0.59 B158DRAFT_1810 spermidine synthase low > 40
Rhodanobacter denitrificans FW104-10B01 0.59 LRK54_RS09165 DNA repair protein RadC 0.30 LRK54_RS09135 polyamine aminopropyltransferase — —
Marinobacter adhaerens HP15 0.58 HP15_3321 DNA repair protein RadC-like protein 0.28 HP15_273 spermidine synthase low > 73
Dyella japonica UNC79MFTsu3.2 0.58 ABZR86_RS15615 DNA repair protein RadC 0.30 ABZR86_RS15575 polyamine aminopropyltransferase — —
Rhodanobacter sp. FW510-T8 0.57 OKGIIK_15660 radC DNA repair protein RadC 0.29 OKGIIK_15620 speE polyamine aminopropyltransferase — —
Cupriavidus basilensis FW507-4G11 0.57 RR42_RS16995 hypothetical protein 0.24 RR42_RS17580 spermidine synthase low > 128
Xanthomonas campestris pv. campestris strain 8004 0.57 Xcc-8004.4897.1 DNA repair protein RadC 0.27 Xcc-8004.4910.1 Spermidine synthase (EC 2.5.1.16) — —
Lysobacter sp. OAE881 0.52 ABIE51_RS00095 DNA repair protein RadC 0.27 ABIE51_RS00130 polyamine aminopropyltransferase — —
Dickeya dianthicola ME23 0.52 DZA65_RS00755 JAB domain-containing protein 0.61 DZA65_RS17215 polyamine aminopropyltransferase low > 75
Dickeya dianthicola 67-19 0.52 HGI48_RS00700 DNA repair protein RadC 0.62 HGI48_RS16130 polyamine aminopropyltransferase low > 71
Dickeya dadantii 3937 0.51 DDA3937_RS20515 DNA repair protein RadC 0.61 DDA3937_RS16010 polyamine aminopropyltransferase low > 74
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.51 GFF371 DNA repair protein RadC 0.59 GFF107 Spermidine synthase (EC 2.5.1.16) low > 78
Rahnella sp. WP5 0.51 EX31_RS14470 JAB domain-containing protein 0.61 EX31_RS03375 polyamine aminopropyltransferase low > 89
Serratia liquefaciens MT49 0.51 IAI46_24825 DNA repair protein RadC 0.61 IAI46_21290 polyamine aminopropyltransferase low > 86
Escherichia coli BW25113 0.51 b3638 radC DNA repair protein (VIMSS) 0.61 b0121 speE spermidine synthase (NCBI) low > 76
Escherichia coli ECRC101 0.51 MCAODC_06130 radC DNA repair protein RadC 0.61 MCAODC_00980 speE polyamine aminopropyltransferase — —
Escherichia coli ECOR27 0.51 NOLOHH_07500 radC DNA repair protein RadC 0.61 NOLOHH_02810 speE polyamine aminopropyltransferase low > 57
Escherichia coli ECRC62 0.51 BNILDI_04015 radC DNA repair protein RadC 0.61 BNILDI_08800 speE polyamine aminopropyltransferase — —
Escherichia fergusonii Becca 0.51 EFB2_00175 hypothetical protein 0.61 EFB2_03924 Polyamine aminopropyltransferase low > 86
Pantoea sp. MT58 0.51 IAI47_00620 DNA repair protein RadC 0.60 IAI47_15710 polyamine aminopropyltransferase low > 76
Escherichia coli ECRC101 0.51 OKFHMN_15620 radC DNA repair protein RadC 0.61 OKFHMN_10465 speE polyamine aminopropyltransferase — —
Escherichia coli ECRC99 0.51 KEDOAH_12530 radC DNA repair protein RadC 0.61 KEDOAH_17690 speE polyamine aminopropyltransferase — —
Escherichia coli Nissle 1917 0.51 ECOLIN_RS20730 DNA repair protein RadC 0.61 ECOLIN_RS00675 polyamine aminopropyltransferase low > 52
Escherichia coli ECOR38 0.51 HEPCGN_14445 radC DNA repair protein RadC 0.61 HEPCGN_08445 speE polyamine aminopropyltransferase low > 85
Escherichia coli ECRC102 0.51 NIAGMN_13380 radC DNA repair protein RadC 0.61 NIAGMN_08315 speE polyamine aminopropyltransferase — —
Escherichia coli ECRC98 0.51 JDDGAC_19245 radC DNA repair protein RadC 0.61 JDDGAC_14060 speE polyamine aminopropyltransferase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.50 OHPLBJKB_00064 hypothetical protein 0.61 OHPLBJKB_03540 Polyamine aminopropyltransferase low > 73
Escherichia coli BL21 0.50 ECD_03495 UPF0758 family protein 0.61 ECD_00120 spermidine synthase (putrescine aminopropyltransferase) low > 60
Paraburkholderia graminis OAS925 0.49 ABIE53_003289 DNA repair protein RadC 0.22 ABIE53_003538 spermidine synthase low > 113
Paraburkholderia bryophila 376MFSha3.1 0.49 H281DRAFT_04066 DNA replication and repair protein RadC 0.25 H281DRAFT_06313 spermidine synthase (EC 2.5.1.16) low > 103
Enterobacter asburiae PDN3 0.49 EX28DRAFT_3888 DNA repair protein radc 0.59 EX28DRAFT_3718 spermidine synthase low > 76
Pectobacterium carotovorum WPP14 0.47 HER17_RS20830 DNA repair protein RadC 0.62 HER17_RS05505 polyamine aminopropyltransferase low > 75
Enterobacter sp. TBS_079 0.47 MPMX20_00097 hypothetical protein 0.59 MPMX20_00815 Polyamine aminopropyltransferase low > 85
Burkholderia phytofirmans PsJN 0.47 BPHYT_RS15625 hypothetical protein 0.25 BPHYT_RS16845 spermidine synthase low > 109
Klebsiella michiganensis M5al 0.46 BWI76_RS27365 hypothetical protein 0.60 BWI76_RS04925 spermidine synthase low > 92
Erwinia tracheiphila SCR3 0.44 LU632_RS21995 radC DNA repair protein RadC 0.59 LU632_RS20150 speE polyamine aminopropyltransferase low > 74
Phaeobacter inhibens DSM 17395 0.28 PGA1_c34550 DNA repair protein RadC 0.53 PGA1_c14470 spermidine synthase SpeE low > 62
Azospirillum brasilense Sp245 0.28 AZOBR_RS04400 DNA repair protein RadC 0.54 AZOBR_RS02020 spermidine synthase low > 97
Rhodospirillum rubrum S1H 0.26 Rru_A0732 DNA repair protein RadC (NCBI) 0.48 Rru_A1691 Spermine synthase (NCBI) low > 58
Synechococcus elongatus PCC 7942 0.25 Synpcc7942_1227 radC DNA repair protein RadC 0.27 Synpcc7942_0628 spermidine synthase low > 38

Not shown: 44 genomes with orthologs for Psest_3803 only; 2 genomes with orthologs for Psest_1911 only