Conservation of cofitness between EX31_RS14255 and EX31_RS12535 in Rahnella sp. WP5

53 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Rahnella sp. WP5 1.0 EX31_RS14255 ribonuclease E activity regulator RraA 1.0 EX31_RS12535 DnaA initiator-associating protein DiaA 0.50 10
Serratia liquefaciens MT49 0.95 IAI46_24585 ribonuclease E activity regulator RraA 0.95 IAI46_22310 DnaA initiator-associating protein DiaA low > 86
Pectobacterium carotovorum WPP14 0.93 HER17_RS00840 ribonuclease E activity regulator RraA 0.94 HER17_RS19875 DnaA initiator-associating protein DiaA low > 75
Erwinia tracheiphila SCR3 0.93 LU632_RS19685 rraA ribonuclease E activity regulator RraA 0.91 LU632_RS02215 diaA DnaA initiator-associating protein DiaA low > 74
Escherichia coli BL21 0.93 ECD_03814 ribonuclease E (RNase E) inhibitor protein 0.94 ECD_03016 DnaA initiator-associating factor for replication initiation low > 61
Escherichia coli HS(pFamp)R (ATCC 700891) 0.93 OHPLBJKB_04122 Regulator of ribonuclease activity A 0.94 OHPLBJKB_00551 DnaA initiator-associating protein DiaA low > 73
Escherichia coli ECRC62 0.93 BNILDI_05635 rraA ribonuclease E activity regulator RraA 0.94 BNILDI_01510 diaA DnaA initiator-associating protein DiaA low > 75
Escherichia coli BW25113 0.93 b3929 rraA ribonuclease activity regulator protein RraA (NCBI) 0.94 b3149 yraO DnaA initiator-associating factor for replication initiation (NCBI) low > 76
Escherichia coli ECRC100 0.93 OKFHMN_13750 rraA ribonuclease E activity regulator RraA 0.94 OKFHMN_18220 diaA DnaA initiator-associating protein DiaA low > 80
Escherichia coli ECOR38 0.93 HEPCGN_12395 rraA ribonuclease E activity regulator RraA 0.94 HEPCGN_17095 diaA DnaA initiator-associating protein DiaA 0.53 36
Escherichia coli ECOR27 0.93 NOLOHH_05895 rraA ribonuclease E activity regulator RraA 0.94 NOLOHH_10020 diaA DnaA initiator-associating protein DiaA low > 75
Escherichia coli ECRC98 0.93 JDDGAC_17375 rraA ribonuclease E activity regulator RraA 0.94 JDDGAC_21845 diaA DnaA initiator-associating protein DiaA low > 86
Escherichia coli ECRC99 0.93 KEDOAH_14410 rraA ribonuclease E activity regulator RraA 0.94 KEDOAH_09930 diaA DnaA initiator-associating protein DiaA — —
Escherichia coli Nissle 1917 0.93 ECOLIN_RS22625 ribonuclease E activity regulator RraA 0.94 ECOLIN_RS18100 DnaA initiator-associating protein DiaA low > 55
Escherichia coli ECRC101 0.93 MCAODC_04250 rraA ribonuclease E activity regulator RraA 0.94 MCAODC_08740 diaA DnaA initiator-associating protein DiaA low > 87
Escherichia fergusonii Becca 0.93 EFB2_04689 Regulator of ribonuclease activity A 0.94 EFB2_00674 DnaA initiator-associating protein DiaA low > 86
Escherichia coli ECRC102 0.93 NIAGMN_11505 rraA ribonuclease E activity regulator RraA 0.94 NIAGMN_15980 diaA DnaA initiator-associating protein DiaA — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.92 GFF2311 Ribonuclease E inhibitor RraA 0.94 GFF1518 Phosphoheptose isomerase (EC 5.3.1.-) low > 78
Enterobacter sp. TBS_079 0.91 MPMX20_04540 Regulator of ribonuclease activity A 0.95 MPMX20_04053 DnaA initiator-associating protein DiaA low > 85
Klebsiella michiganensis M5al 0.90 BWI76_RS00740 ribonuclease E activity regulator RraA 0.94 BWI76_RS24925 DnaA initiator-associating protein DiaA low > 92
Enterobacter asburiae PDN3 0.90 EX28DRAFT_4402 regulator of ribonuclease activity A 0.95 EX28DRAFT_3198 Phosphoheptose isomerase low > 76
Dickeya dianthicola 67-19 0.86 HGI48_RS20470 ribonuclease E activity regulator RraA 0.95 HGI48_RS01595 DnaA initiator-associating protein DiaA low > 71
Dickeya dianthicola ME23 0.85 DZA65_RS21515 ribonuclease E activity regulator RraA 0.95 DZA65_RS01670 DnaA initiator-associating protein DiaA low > 75
Dickeya dadantii 3937 0.85 DDA3937_RS00905 ribonuclease E activity regulator RraA 0.95 DDA3937_RS01700 DnaA initiator-associating protein DiaA low > 74
Pantoea sp. MT58 0.82 IAI47_00840 ribonuclease E activity regulator RraA 0.92 IAI47_02835 DnaA initiator-associating protein DiaA low > 76
Shewanella oneidensis MR-1 0.73 SO4197 menG-2 S-adenosylmethionine:2-demethylmenaquinone methyltransferase (NCBI ptt file) 0.66 SO0298 gmhA phosphoheptose isomerase (NCBI ptt file) low > 76
Vibrio cholerae E7946 ATCC 55056 0.72 CSW01_13500 ribonuclease E activity regulator RraA 0.73 CSW01_03075 phosphoheptose isomerase low > 62
Shewanella sp. ANA-3 0.72 Shewana3_3723 ribonuclease activity regulator protein RraA (RefSeq) 0.66 Shewana3_3882 phosphoheptose isomerase (RefSeq) low > 73
Shewanella amazonensis SB2B 0.71 Sama_3200 ribonuclease activity regulator protein RraA (RefSeq) 0.68 Sama_3356 phosphoheptose isomerase (RefSeq) — —
Shewanella loihica PV-4 0.70 Shew_3370 ribonuclease activity regulator protein RraA (RefSeq) 0.66 Shew_0225 phosphoheptose isomerase (RefSeq) — —
Alteromonas macleodii MIT1002 0.66 MIT1002_00164 Regulator of ribonuclease activity A 0.66 MIT1002_03117 DnaA initiator-associating protein DiaA low > 70
Pseudomonas stutzeri RCH2 0.58 Psest_2315 RraA famliy 0.58 Psest_3273 Phosphoheptose isomerase — —
Pseudomonas fluorescens FW300-N2E3 0.57 AO353_00850 ribonuclease activity regulator protein RraA 0.56 AO353_15275 phosphoheptose isomerase — —
Pseudomonas sp. S08-1 0.57 OH686_01650 Ribonuclease E inhibitor RraA 0.57 OH686_08360 phosphoheptose isomerase — —
Pseudomonas putida KT2440 0.57 PP_2084 Putative regulator of ribonuclease activity 0.57 PP_1323 factor modulating bacterial replication archosome assembly — —
Pseudomonas sp. RS175 0.57 PFR28_01040 Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 0.56 PFR28_03600 Phosphoheptose isomerase — —
Pseudomonas fluorescens FW300-N2E2 0.56 Pf6N2E2_2387 Ribonuclease E inhibitor RraA 0.56 Pf6N2E2_5343 Phosphoheptose isomerase (EC 5.3.1.-) — —
Pseudomonas fluorescens FW300-N1B4 0.56 Pf1N1B4_3828 Ribonuclease E inhibitor RraA 0.56 Pf1N1B4_956 Phosphoheptose isomerase (EC 5.3.1.-) — —
Pseudomonas fluorescens FW300-N2C3 0.56 AO356_02815 ribonuclease activity regulator protein RraA 0.56 AO356_17095 phosphoheptose isomerase — —
Pseudomonas simiae WCS417 0.56 PS417_21010 ribonuclease activity regulator protein RraA 0.56 PS417_04575 DnaA initiator-associating protein DiaA — —
Pseudomonas fluorescens SBW25 0.56 PFLU_RS22620 putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 0.56 PFLU_RS04640 phosphoheptose isomerase — —
Pseudomonas fluorescens SBW25-INTG 0.56 PFLU_RS22620 putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 0.56 PFLU_RS04640 phosphoheptose isomerase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.56 Psyr_2092 Protein of unknown function 1935 0.57 Psyr_4115 phosphoheptose isomerase low > 86
Pseudomonas syringae pv. syringae B728a 0.56 Psyr_2092 Protein of unknown function 1935 0.57 Psyr_4115 phosphoheptose isomerase low > 86
Pseudomonas fluorescens GW456-L13 0.55 PfGW456L13_4110 Ribonuclease E inhibitor RraA 0.57 PfGW456L13_1640 Phosphoheptose isomerase (EC 5.3.1.-) — —
Marinobacter adhaerens HP15 0.48 HP15_2228 ribonuclease activity regulator protein RraA 0.31 HP15_550 phosphoheptose isomerase low > 73
Dechlorosoma suillum PS 0.43 Dsui_0010 RraA family protein 0.49 Dsui_0100 phosphoheptose isomerase — —
Paraburkholderia sabiae LMG 24235 0.42 QEN71_RS06240 ribonuclease E activity regulator RraA 0.45 QEN71_RS00665 phosphoheptose isomerase low > 153
Acidovorax sp. GW101-3H11 0.41 Ac3H11_2834 Ribonuclease E inhibitor RraA 0.38 Ac3H11_4468 Phosphoheptose isomerase (EC 5.3.1.-) — —
Herbaspirillum seropedicae SmR1 0.41 HSERO_RS10555 ribonuclease 0.46 HSERO_RS23360 phosphoheptose isomerase — —
Variovorax sp. SCN45 0.39 GFF4367 KEGG: regulator of ribonuclease activity A 0.31 GFF3737 DnaA initiator-associating protein DiaA — —
Azospirillum sp. SherDot2 0.39 MPMX19_04842 Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 0.32 MPMX19_06611 Phosphoheptose isomerase — —
Burkholderia phytofirmans PsJN 0.39 BPHYT_RS12315 ribonuclease 0.49 BPHYT_RS01950 phosphoheptose isomerase — —
Cupriavidus basilensis FW507-4G11 0.37 RR42_RS12215 ribonuclease 0.50 RR42_RS19730 phosphoheptose isomerase — —

Not shown: 10 genomes with orthologs for EX31_RS14255 only; 10 genomes with orthologs for EX31_RS12535 only