Conservation of cofitness between EX28DRAFT_3732 and EX28DRAFT_2496 in Enterobacter asburiae PDN3

54 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Enterobacter asburiae PDN3 1.0 EX28DRAFT_3732 poly(A) polymerase 1.0 EX28DRAFT_2496 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family 0.68 4
Enterobacter sp. TBS_079 0.89 MPMX20_00829 Poly(A) polymerase I 0.99 MPMX20_01064 Multidrug efflux pump subunit AcrB low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.86 GFF89 Poly(A) polymerase (EC 2.7.7.19) 0.93 GFF4379 RND efflux system, inner membrane transporter CmeB low > 78
Escherichia fergusonii Becca 0.85 EFB2_03901 Poly(A) polymerase I 0.92 EFB2_03596 Multidrug efflux pump subunit AcrB low > 86
Escherichia coli BL21 0.85 ECD_00142 poly(A) polymerase 0.92 ECD_00413 multidrug efflux system protein low > 61
Escherichia coli ECRC100 0.85 OKFHMN_10355 pcnB polynucleotide adenylyltransferase PcnB 0.92 OKFHMN_08205 acrB efflux RND transporter permease AcrB low > 80
Escherichia coli ECRC101 0.85 MCAODC_00870 pcnB polynucleotide adenylyltransferase PcnB 0.92 MCAODC_27430 acrB efflux RND transporter permease AcrB low > 87
Escherichia coli ECRC99 0.85 KEDOAH_17800 pcnB polynucleotide adenylyltransferase PcnB 0.92 KEDOAH_19760 acrB efflux RND transporter permease AcrB — —
Escherichia coli Nissle 1917 0.85 ECOLIN_RS00790 polynucleotide adenylyltransferase PcnB 0.92 ECOLIN_RS02750 efflux RND transporter permease AcrB low > 55
Escherichia coli BW25113 0.85 b0143 pcnB poly(A) polymerase I (VIMSS) 0.92 b0462 acrB multidrug efflux system protein (NCBI) low > 76
Escherichia coli ECRC102 0.85 NIAGMN_08205 pcnB polynucleotide adenylyltransferase PcnB 0.92 NIAGMN_06260 acrB efflux RND transporter permease AcrB — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.85 OHPLBJKB_03519 Poly(A) polymerase I 0.92 OHPLBJKB_03212 Multidrug efflux pump subunit AcrB low > 73
Escherichia coli ECOR38 0.85 HEPCGN_08305 pcnB polynucleotide adenylyltransferase PcnB 0.92 HEPCGN_06820 acrB efflux RND transporter permease AcrB low > 87
Escherichia coli ECRC62 0.85 BNILDI_08970 pcnB polynucleotide adenylyltransferase PcnB 0.92 BNILDI_22555 acrB efflux RND transporter permease AcrB low > 75
Escherichia coli ECOR27 0.85 NOLOHH_02700 pcnB polynucleotide adenylyltransferase PcnB 0.92 NOLOHH_01140 acrB efflux RND transporter permease AcrB low > 75
Klebsiella michiganensis M5al 0.82 BWI76_RS05005 polynucleotide adenylyltransferase 0.92 BWI76_RS06775 multidrug efflux RND transporter permease subunit low > 92
Erwinia tracheiphila SCR3 0.78 LU632_RS20090 pcnB polynucleotide adenylyltransferase PcnB 0.84 LU632_RS18185 efflux RND transporter permease subunit — —
Dickeya dadantii 3937 0.77 DDA3937_RS15945 polynucleotide adenylyltransferase PcnB 0.80 DDA3937_RS05735 multidrug efflux RND transporter permease subunit low > 74
Dickeya dianthicola 67-19 0.76 HGI48_RS16060 polynucleotide adenylyltransferase PcnB 0.79 HGI48_RS05790 multidrug efflux RND transporter permease subunit low > 71
Pantoea sp. MT58 0.76 IAI47_15645 polynucleotide adenylyltransferase PcnB 0.82 IAI47_14515 multidrug efflux RND transporter permease subunit low > 76
Dickeya dianthicola ME23 0.76 DZA65_RS17145 polynucleotide adenylyltransferase PcnB 0.79 DZA65_RS06115 multidrug efflux RND transporter permease subunit low > 75
Serratia liquefaciens MT49 0.76 IAI46_21220 polynucleotide adenylyltransferase PcnB 0.82 IAI46_05185 multidrug efflux RND transporter permease subunit SdeY low > 86
Pectobacterium carotovorum WPP14 0.75 HER17_RS05570 polynucleotide adenylyltransferase PcnB 0.80 HER17_RS15740 multidrug efflux RND transporter permease subunit low > 75
Vibrio cholerae E7946 ATCC 55056 0.58 CSW01_03145 polynucleotide adenylyltransferase PcnB 0.24 CSW01_00850 multidrug resistance protein low > 62
Shewanella oneidensis MR-1 0.54 SO0872 pcnB polyA polymerase (NCBI ptt file) 0.68 SO4692 AcrB/AcrD/AcrF family protein (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.54 Shewana3_3406 poly(A) polymerase (RefSeq) 0.67 Shewana3_4045 hydrophobe/amphiphile efflux-1 (HAE1) family protein (RefSeq) low > 73
Shewanella loihica PV-4 0.52 Shew_3131 poly(A) polymerase (RefSeq) 0.67 Shew_0032 hydrophobe/amphiphile efflux-1 (HAE1) family protein (RefSeq) low > 60
Alteromonas macleodii MIT1002 0.52 MIT1002_03692 Poly(A) polymerase I precursor 0.58 MIT1002_00135 Multidrug-efflux transporter MexB low > 70
Shewanella amazonensis SB2B 0.51 Sama_0778 tRNA nucleotidyltransferase (CCA-adding enzyme) (RefSeq) 0.67 Sama_3554 AcrB/AcrD/AcrF family protein (RefSeq) low > 62
Kangiella aquimarina DSM 16071 0.49 B158DRAFT_0058 poly(A) polymerase 0.47 B158DRAFT_0733 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family 0.44 40
Rhodanobacter denitrificans FW104-10B01 0.45 LRK54_RS15105 polynucleotide adenylyltransferase PcnB 0.48 LRK54_RS02100 multidrug efflux RND transporter permease subunit low > 59
Rhodanobacter denitrificans MT42 0.45 LRK55_RS14820 polynucleotide adenylyltransferase PcnB 0.48 LRK55_RS01875 multidrug efflux RND transporter permease subunit low > 63
Rhodanobacter sp. FW510-T8 0.45 OKGIIK_03875 pcnB tRNA nucleotidyltransferase/poly(A) polymerase 0.48 OKGIIK_09170 Efflux pump membrane transporter low > 52
Dyella japonica UNC79MFTsu3.2 0.45 ABZR86_RS00805 polynucleotide adenylyltransferase PcnB 0.63 ABZR86_RS18285 efflux RND transporter permease subunit low > 74
Xanthomonas campestris pv. campestris strain 8004 0.44 Xcc-8004.3054.1 Poly(A) polymerase (EC 2.7.7.19) 0.65 Xcc-8004.1794.1 RND efflux system, inner membrane transporter CmeB low > 74
Pseudomonas syringae pv. syringae B728a ΔmexB 0.43 Psyr_0830 Poly(A) polymerase 0.68 Psyr_4008 Hydrophobe/amphiphile efflux-1 HAE1 — —
Pseudomonas putida KT2440 0.43 PP_4697 poly(A) polymerase 0.67 PP_1385 Probable efflux pump membrane transporter TtgB low > 96
Pseudomonas syringae pv. syringae B728a 0.43 Psyr_0830 Poly(A) polymerase 0.68 Psyr_4008 Hydrophobe/amphiphile efflux-1 HAE1 low > 86
Pseudomonas sp. S08-1 0.43 OH686_17255 Poly(A) polymerase 0.69 OH686_16050 Multidrug efflux system, inner membrane proton/drug antiporter (RND type) low > 80
Pseudomonas fluorescens FW300-N2E3 0.42 AO353_14395 poly(A) polymerase 0.68 AO353_17295 multidrug transporter low > 101
Pseudomonas fluorescens FW300-N1B4 0.42 Pf1N1B4_2856 Poly(A) polymerase (EC 2.7.7.19) 0.67 Pf1N1B4_3246 RND efflux system, inner membrane transporter CmeB low > 87
Pseudomonas fluorescens GW456-L13 0.42 PfGW456L13_1523 Poly(A) polymerase (EC 2.7.7.19) 0.67 PfGW456L13_4581 RND efflux system, inner membrane transporter CmeB low > 87
Pseudomonas fluorescens SBW25 0.42 PFLU_RS25740 polynucleotide adenylyltransferase PcnB 0.66 PFLU_RS06805 efflux RND transporter permease subunit low > 109
Pseudomonas fluorescens SBW25-INTG 0.42 PFLU_RS25740 polynucleotide adenylyltransferase PcnB 0.66 PFLU_RS06805 efflux RND transporter permease subunit low > 109
Pseudomonas sp. RS175 0.42 PFR28_03719 Poly(A) polymerase I 0.68 PFR28_00631 putative efflux pump membrane transporter TtgB low > 88
Pseudomonas fluorescens FW300-N2E2 0.42 Pf6N2E2_5155 Poly(A) polymerase (EC 2.7.7.19) 0.68 Pf6N2E2_2824 RND efflux system, inner membrane transporter CmeB low > 103
Pseudomonas simiae WCS417 0.42 PS417_23900 poly(A) polymerase 0.67 PS417_06770 multidrug transporter low > 88
Pseudomonas fluorescens FW300-N2C3 0.41 AO356_16070 poly(A) polymerase 0.68 AO356_04880 multidrug transporter low > 104
Pseudomonas stutzeri RCH2 0.41 Psest_0998 poly(A) polymerase 0.65 Psest_0310 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family 0.24 17
Castellaniella sp019104865 MT123 0.37 ABCV34_RS08810 polynucleotide adenylyltransferase PcnB 0.49 ABCV34_RS04225 efflux RND transporter permease subunit low > 48
Ralstonia sp. UNC404CL21Col 0.36 ABZR87_RS00935 polynucleotide adenylyltransferase PcnB 0.56 ABZR87_RS05315 efflux RND transporter permease subunit low > 80
Variovorax sp. OAS795 0.33 ABID97_RS08710 polynucleotide adenylyltransferase PcnB 0.53 ABID97_RS00325 efflux RND transporter permease subunit low > 91
Variovorax sp. SCN45 0.33 GFF3943 Poly(A) polymerase (EC 2.7.7.19) 0.60 GFF5990 RND efflux system, inner membrane transporter low > 127
Acidovorax sp. GW101-3H11 0.32 Ac3H11_1313 Poly(A) polymerase (EC 2.7.7.19) 0.52 Ac3H11_4448 RND efflux system, inner membrane transporter CmeB — —
Acinetobacter radioresistens SK82 0.30 MPMX26_00543 Poly(A) polymerase I 0.59 MPMX26_00689 Multidrug resistance protein MexB low > 36

Not shown: 4 genomes with orthologs for EX28DRAFT_3732 only; 26 genomes with orthologs for EX28DRAFT_2496 only