Conservation of cofitness between ECD_03871 and ECD_03516 in Escherichia coli BL21

55 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_03871 phosphomethylpyrimidine synthase 1.0 ECD_03516 Int low > 61
Escherichia coli ECRC99 0.99 KEDOAH_14785 thiC phosphomethylpyrimidine synthase ThiC 0.96 KEDOAH_12640 fimB integrase — —
Escherichia coli ECRC102 0.99 NIAGMN_11125 thiC phosphomethylpyrimidine synthase ThiC 0.96 NIAGMN_13265 fimB integrase — —
Escherichia coli ECRC101 0.99 MCAODC_03875 thiC phosphomethylpyrimidine synthase ThiC 0.96 MCAODC_06015 fimB integrase low > 87
Escherichia coli ECRC98 0.99 JDDGAC_17000 thiC phosphomethylpyrimidine synthase ThiC 0.96 JDDGAC_19130 fimB integrase low > 86
Escherichia coli ECRC100 0.99 OKFHMN_13375 thiC phosphomethylpyrimidine synthase ThiC 0.96 OKFHMN_15505 fimB integrase low > 80
Escherichia coli HS(pFamp)R (ATCC 700891) 0.99 OHPLBJKB_04056 Phosphomethylpyrimidine synthase 0.22 OHPLBJKB_01203 Prophage integrase IntA low > 73
Escherichia coli BW25113 0.99 b3994 thiC thiamine biosynthesis protein ThiC (NCBI) 0.48 b2349 intS CPS-53 (KpLE1) prophage; predicted prophage CPS-53 integrase (NCBI) low > 76
Escherichia coli Nissle 1917 0.99 ECOLIN_RS23040 phosphomethylpyrimidine synthase ThiC 0.96 ECOLIN_RS26185 integrase arm-type DNA-binding domain-containing protein low > 55
Escherichia coli ECRC62 0.99 BNILDI_06005 thiC phosphomethylpyrimidine synthase ThiC 0.65 BNILDI_09605 integrase low > 75
Escherichia coli ECOR38 0.99 HEPCGN_12010 thiC phosphomethylpyrimidine synthase ThiC 1.00 HEPCGN_14290 fimB integrase low > 87
Escherichia fergusonii Becca 0.99 EFB2_04617 Phosphomethylpyrimidine synthase 0.95 EFB2_00121 Prophage integrase IntS low > 86
Enterobacter asburiae PDN3 0.95 EX28DRAFT_4536 phosphomethylpyrimidine synthase 0.62 EX28DRAFT_2648 Integrase low > 76
Klebsiella michiganensis M5al 0.93 BWI76_RS01555 phosphomethylpyrimidine synthase ThiC 0.62 BWI76_RS05825 putative site specific integrase low > 92
Pectobacterium carotovorum WPP14 0.87 HER17_RS20380 phosphomethylpyrimidine synthase ThiC 0.61 HER17_RS04720 tyrosine-type recombinase/integrase low > 75
Rahnella sp. WP5 0.86 EX31_RS16815 phosphomethylpyrimidine synthase ThiC 0.67 EX31_RS20945 tyrosine-type recombinase/integrase low > 89
Dickeya dadantii 3937 0.85 DDA3937_RS01175 phosphomethylpyrimidine synthase ThiC 0.66 DDA3937_RS16520 tyrosine-type recombinase/integrase low > 74
Serratia liquefaciens MT49 0.84 IAI46_01320 phosphomethylpyrimidine synthase ThiC 0.65 IAI46_05415 tyrosine-type recombinase/integrase low > 86
Dickeya dianthicola 67-19 0.84 HGI48_RS01170 phosphomethylpyrimidine synthase ThiC 0.63 HGI48_RS14775 tyrosine-type recombinase/integrase low > 71
Pantoea sp. MT58 0.84 IAI47_18085 phosphomethylpyrimidine synthase ThiC 0.46 IAI47_06050 tyrosine-type recombinase/integrase low > 76
Erwinia tracheiphila SCR3 0.83 LU632_RS00970 thiC phosphomethylpyrimidine synthase ThiC 0.49 LU632_RS07185 tyrosine-type recombinase/integrase low > 74
Alteromonas macleodii MIT1002 0.75 MIT1002_00097 Phosphomethylpyrimidine synthase 0.12 MIT1002_04073 Putative prophage CPS-53 integrase low > 70
Pseudomonas putida KT2440 0.71 PP_4922 Phosphomethylpyrimidine synthase 0.10 PP_2501 putative phage integrase low > 96
Pseudomonas sp. S08-1 0.71 OH686_15885 phosphomethylpyrimidine synthase 0.37 OH686_21775 Phage integrase low > 80
Pseudomonas fluorescens SBW25-INTG 0.71 PFLU_RS02430 phosphomethylpyrimidine synthase ThiC 0.38 PFLU_RS09280 DUF4102 domain-containing protein low > 109
Pseudomonas fluorescens FW300-N2E3 0.71 AO353_13010 thiamine biosynthesis protein ThiC 0.35 AO353_11495 integrase low > 101
Pseudomonas fluorescens SBW25 0.71 PFLU_RS02430 phosphomethylpyrimidine synthase ThiC 0.38 PFLU_RS09280 DUF4102 domain-containing protein low > 109
Pseudomonas fluorescens FW300-N1B4 0.71 Pf1N1B4_1447 Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17) 0.25 Pf1N1B4_3004 Integrase low > 87
Pseudomonas simiae WCS417 0.71 PS417_02355 thiamine biosynthesis protein ThiC 0.36 PS417_00885 integrase low > 88
Pseudomonas stutzeri RCH2 0.71 Psest_0477 thiamine biosynthesis protein ThiC 0.55 Psest_4016 Integrase low > 67
Dyella japonica UNC79MFTsu3.2 0.69 ABZR86_RS17230 phosphomethylpyrimidine synthase ThiC 0.40 ABZR86_RS02275 integrase arm-type DNA-binding domain-containing protein low > 74
Castellaniella sp019104865 MT123 0.69 ABCV34_RS10825 phosphomethylpyrimidine synthase ThiC 0.26 ABCV34_RS11900 tyrosine-type recombinase/integrase low > 48
Paraburkholderia sabiae LMG 24235 0.69 QEN71_RS05480 phosphomethylpyrimidine synthase ThiC 0.23 QEN71_RS10240 tyrosine-type recombinase/integrase low > 153
Dechlorosoma suillum PS 0.69 Dsui_0422 thiamine biosynthesis protein ThiC 0.38 Dsui_0218 Integrase — —
Paraburkholderia bryophila 376MFSha3.1 0.69 H281DRAFT_00395 hydroxymethylpyrimidine synthase 0.41 H281DRAFT_02146 Integrase low > 103
Rhodanobacter sp. FW510-T8 0.68 OKGIIK_16965 thiC phosphomethylpyrimidine synthase ThiC 0.36 OKGIIK_15870 integrase low > 52
Burkholderia phytofirmans PsJN 0.68 BPHYT_RS13220 phosphomethylpyrimidine synthase 0.22 BPHYT_RS32385 integrase low > 109
Acinetobacter radioresistens SK82 0.68 MPMX26_00180 Phosphomethylpyrimidine synthase 0.39 MPMX26_02861 Prophage integrase IntS low > 36
Paraburkholderia graminis OAS925 0.68 ABIE53_002857 phosphomethylpyrimidine synthase 0.40 ABIE53_000475 integrase low > 113
Ralstonia solanacearum GMI1000 0.68 RS_RS00555 phosphomethylpyrimidine synthase 0.50 RS_RS04790 DUF4102 domain-containing protein low > 80
Ralstonia solanacearum UW163 0.68 UW163_RS03640 phosphomethylpyrimidine synthase ThiC 0.26 UW163_RS08775 integrase — —
Ralstonia solanacearum PSI07 0.68 RPSI07_RS23420 phosphomethylpyrimidine synthase ThiC 0.26 RPSI07_RS12430 DUF4102 domain-containing protein low > 81
Cupriavidus basilensis FW507-4G11 0.67 RR42_RS01290 thiamine biosynthesis protein ThiC 0.32 RR42_RS18370 integrase low > 128
Magnetospirillum magneticum AMB-1 0.65 AMB_RS01125 phosphomethylpyrimidine synthase 0.39 AMB_RS02510 DUF4102 domain-containing protein — —
Azospirillum brasilense Sp245 0.65 AZOBR_RS07940 phosphomethylpyrimidine synthase 0.11 AZOBR_RS30360 integrase low > 97
Hydrogenophaga sp. GW460-11-11-14-LB1 0.64 GFF166 Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17) 0.25 GFF4358 Integrase low > 90
Caulobacter crescentus NA1000 0.63 CCNA_02109 thiamine biosynthesis protein thiC 0.14 CCNA_00480 bacteriophage P4 integrase low > 66
Caulobacter crescentus NA1000 Δfur 0.63 CCNA_02109 thiamine biosynthesis protein thiC 0.14 CCNA_00480 bacteriophage P4 integrase low > 67
Agrobacterium fabrum C58 0.63 Atu2569 thiamine biosynthesis protein 0.15 Atu3831 phage-related integrase low > 89
Sinorhizobium meliloti 1021 0.63 SM_b20615 thiamine biosynthesis protein ThiC 0.16 SMc03246 integrase DNA protein low > 103
Variovorax sp. OAS795 0.63 ABID97_RS25235 phosphomethylpyrimidine synthase ThiC 0.33 ABID97_RS11165 integrase arm-type DNA-binding domain-containing protein low > 91
Azospirillum sp. SherDot2 0.63 MPMX19_00336 Phosphomethylpyrimidine synthase 0.14 MPMX19_02360 Prophage integrase IntA low > 112
Acidovorax sp. GW101-3H11 0.63 Ac3H11_2027 Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17) 0.32 Ac3H11_381 Integrase low > 79
Sphingomonas koreensis DSMZ 15582 0.61 Ga0059261_2424 hydroxymethylpyrimidine synthase 0.35 Ga0059261_1748 Integrase low > 68
Rhodopseudomonas palustris CGA009 0.60 TX73_018540 phosphomethylpyrimidine synthase ThiC 0.23 TX73_011375 tyrosine-type recombinase/integrase low > 86
Rhodospirillum rubrum S1H 0.58 Rru_A2008 Thiamine biosynthesis protein ThiC (NCBI) 0.23 Rru_A0354 Phage integrase (NCBI) low > 58

Not shown: 38 genomes with orthologs for ECD_03871 only; 3 genomes with orthologs for ECD_03516 only