| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Escherichia coli BL21 | 1.0 | ECD_03636 | | D-ribose ABC transporter permease | 1.0 | ECD_02483 | | UPF0124 family protein | low | > 61 |
| Escherichia coli ECRC100 | 1.00 | OKFHMN_14740 | rbsC | ribose ABC transporter permease | 0.97 | OKFHMN_21255 | yfiH | purine nucleoside phosphorylase YfiH | low | > 80 |
| Escherichia coli ECRC99 | 1.00 | KEDOAH_13410 | rbsC | ribose ABC transporter permease | 0.97 | KEDOAH_06965 | yfiH | purine nucleoside phosphorylase YfiH | — | — |
| Escherichia coli ECRC98 | 1.00 | JDDGAC_18360 | rbsC | ribose ABC transporter permease | 0.97 | JDDGAC_24920 | yfiH | purine nucleoside phosphorylase YfiH | low | > 86 |
| Escherichia coli ECOR27 | 1.00 | NOLOHH_06875 | rbsC | ribose ABC transporter permease | 0.98 | NOLOHH_12930 | yfiH | purine nucleoside phosphorylase YfiH | 0.59 | 39 |
| Escherichia coli ECRC101 | 1.00 | MCAODC_05245 | rbsC | ribose ABC transporter permease | 0.97 | MCAODC_11785 | yfiH | purine nucleoside phosphorylase YfiH | low | > 87 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 1.00 | OHPLBJKB_04303 | | Ribose import permease protein RbsC | 1.00 | OHPLBJKB_01113 | | Polyphenol oxidase | low | > 73 |
| Escherichia coli BW25113 | 1.00 | b3750 | rbsC | ribose ABC transporter permease protein (NCBI) | 0.98 | b2593 | yfiH | hypothetical protein (NCBI) | low | > 76 |
| Escherichia coli ECRC62 | 1.00 | BNILDI_04650 | rbsC | ribose ABC transporter permease | 0.97 | BNILDI_11735 | yfiH | purine nucleoside phosphorylase YfiH | low | > 75 |
| Escherichia fergusonii Becca | 1.00 | EFB2_04883 | | Ribose import permease protein RbsC | 0.99 | EFB2_01297 | | Polyphenol oxidase | low | > 86 |
| Escherichia coli Nissle 1917 | 1.00 | ECOLIN_RS21560 | | ribose ABC transporter permease | 0.99 | ECOLIN_RS14670 | | purine nucleoside phosphorylase YfiH | low | > 55 |
| Escherichia coli ECRC102 | 1.00 | NIAGMN_12495 | rbsC | ribose ABC transporter permease | 0.97 | NIAGMN_19025 | yfiH | purine nucleoside phosphorylase YfiH | — | — |
| Escherichia coli ECOR38 | 1.00 | HEPCGN_13450 | rbsC | ribose ABC transporter permease | 0.99 | HEPCGN_20380 | yfiH | purine nucleoside phosphorylase YfiH | low | > 87 |
| Enterobacter asburiae PDN3 | 0.93 | EX28DRAFT_4026 | | Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components | 0.84 | EX28DRAFT_2694 | | YfiH family protein | low | > 76 |
| Enterobacter sp. TBS_079 | 0.93 | MPMX20_04617 | | Ribose import permease protein RbsC | 0.85 | MPMX20_03462 | | Polyphenol oxidase | low | > 85 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.92 | GFF1707 | | Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1) | 0.90 | GFF4183 | | COG1496: Uncharacterized conserved protein | low | > 78 |
| Klebsiella michiganensis M5al | 0.92 | BWI76_RS00280 | | ribose ABC transporter permease | 0.83 | BWI76_RS21445 | | hypothetical protein | low | > 92 |
| Pectobacterium carotovorum WPP14 | 0.90 | HER17_RS21540 | | ribose ABC transporter permease | 0.60 | HER17_RS05405 | | polyphenol oxidase | low | > 75 |
| Dickeya dadantii 3937 | 0.87 | DDA3937_RS00040 | | ribose ABC transporter permease | 0.60 | DDA3937_RS16105 | | polyphenol oxidase | low | > 74 |
| Dickeya dianthicola 67-19 | 0.87 | HGI48_RS21325 | | ribose ABC transporter permease | 0.60 | HGI48_RS16230 | | polyphenol oxidase | low | > 71 |
| Serratia liquefaciens MT49 | 0.87 | IAI46_25065 | | ribose ABC transporter permease | 0.66 | IAI46_03990 | | polyphenol oxidase | low | > 86 |
| Dickeya dianthicola ME23 | 0.87 | DZA65_RS22305 | | ribose ABC transporter permease | 0.60 | DZA65_RS17325 | | polyphenol oxidase | low | > 75 |
| Rahnella sp. WP5 | 0.85 | EX31_RS06180 | | ribose ABC transporter permease | 0.62 | EX31_RS07565 | | polyphenol oxidase | low | > 89 |
| Pantoea sp. MT58 | 0.85 | IAI47_00360 | | ribose ABC transporter permease | 0.60 | IAI47_04430 | | polyphenol oxidase | low | > 76 |
| Vibrio cholerae E7946 ATCC 55056 | 0.73 | CSW01_14655 | | ribose ABC transporter permease | 0.46 | CSW01_03700 | | multi-copper polyphenol oxidoreductase | low | > 62 |
| Azospirillum sp. SherDot2 | 0.46 | MPMX19_03759 | | Ribose import permease protein RbsC | 0.22 | MPMX19_01826 | | Polyphenol oxidase | low | > 112 |
| Rhodospirillum rubrum S1H | 0.43 | Rru_A0248 | | inner-membrane translocator (NCBI) | 0.24 | Rru_A0643 | | Protein of unknown function DUF152 (NCBI) | low | > 58 |
| Herbaspirillum seropedicae SmR1 | 0.41 | HSERO_RS05325 | | ribose ABC transporter permease | 0.45 | HSERO_RS15065 | | laccase | low | > 78 |
| Pseudomonas fluorescens SBW25-INTG | 0.41 | PFLU_RS19510 | | sugar ABC transporter permease | 0.51 | PFLU_RS03875 | | peptidoglycan editing factor PgeF | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.41 | PFLU_RS19510 | | sugar ABC transporter permease | 0.51 | PFLU_RS03875 | | peptidoglycan editing factor PgeF | low | > 109 |
| Pseudomonas simiae WCS417 | 0.41 | PS417_17725 | | ribose ABC transporter permease | 0.52 | PS417_03825 | | laccase | low | > 88 |
| Burkholderia phytofirmans PsJN | 0.40 | BPHYT_RS16055 | | sugar ABC transporter permease | 0.44 | BPHYT_RS09140 | | laccase | — | — |
| Agrobacterium fabrum C58 | 0.39 | Atu4322 | | ribose ABC transporter permease | 0.21 | Atu2215 | | hypothetical protein | low | > 89 |
| Paraburkholderia sabiae LMG 24235 | 0.39 | QEN71_RS02650 | | ABC transporter permease | 0.43 | QEN71_RS22210 | | peptidoglycan editing factor PgeF | low | > 153 |
| Paraburkholderia graminis OAS925 | 0.38 | ABIE53_003385 | | ribose transport system permease protein | 0.41 | ABIE53_002063 | | YfiH family protein | low | > 113 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.38 | H281DRAFT_04148 | | monosaccharide ABC transporter membrane protein, CUT2 family | 0.43 | H281DRAFT_00849 | | conserved hypothetical protein | low | > 103 |
| Pseudomonas syringae pv. syringae B728a | 0.37 | Psyr_2570 | | monosaccharide ABC transporter membrane protein, CUT2 family | 0.52 | Psyr_0727 | | Protein of unknown function DUF152 | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.37 | Psyr_2570 | | monosaccharide ABC transporter membrane protein, CUT2 family | 0.52 | Psyr_0727 | | Protein of unknown function DUF152 | low | > 86 |
| Sinorhizobium meliloti 1021 | 0.37 | SM_b21375 | | sugar uptake ABC transporter permease | 0.23 | SMc02683 | | hypothetical protein | low | > 103 |
| Rhizobium sp. OAE497 | 0.37 | ABIE40_RS24750 | | ABC transporter permease | 0.24 | ABIE40_RS13030 | | peptidoglycan editing factor PgeF | low | > 107 |
| Cupriavidus basilensis FW507-4G11 | 0.33 | RR42_RS03365 | | fructose ABC transporter, permease component (FrcC) (from data) | 0.47 | RR42_RS07595 | | hypothetical protein | low | > 128 |
| Pseudomonas fluorescens FW300-N2C3 | 0.31 | AO356_23210 | | ABC transporter | 0.52 | AO356_15930 | | laccase | low | > 104 |
| Pseudomonas fluorescens FW300-N2E3 | 0.31 | AO353_21390 | | m-Inositol ABC transporter, permease component (iatP) (from data) | 0.53 | AO353_14225 | | laccase | low | > 101 |
| Pseudomonas fluorescens FW300-N2E2 | 0.31 | Pf6N2E2_524 | | Inositol transport system permease protein | 0.51 | Pf6N2E2_5128 | | COG1496: Uncharacterized conserved protein | low | > 103 |
| Pseudomonas fluorescens FW300-N1B4 | 0.31 | Pf1N1B4_4287 | | Inositol transport system permease protein | 0.54 | Pf1N1B4_2823 | | COG1496: Uncharacterized conserved protein | 0.26 | 8 |
| Acidovorax sp. GW101-3H11 | 0.30 | Ac3H11_3036 | | Fructose ABC transporter, permease component FrcC | 0.43 | Ac3H11_2305 | | COG1496: Uncharacterized conserved protein | low | > 79 |
| Ralstonia solanacearum IBSBF1503 | 0.30 | RALBFv3_RS15450 | | ABC transporter permease | 0.42 | RALBFv3_RS01515 | | peptidoglycan editing factor PgeF | low | > 76 |
| Ralstonia solanacearum UW163 | 0.30 | UW163_RS12910 | | ABC transporter permease | 0.42 | UW163_RS14825 | | peptidoglycan editing factor PgeF | — | — |
| Caulobacter crescentus NA1000 | 0.29 | CCNA_00904 | | inositol ABC transport system, permease protein IatP | 0.26 | CCNA_00523 | | multicopper polyphenol oxidase | low | > 66 |
| Caulobacter crescentus NA1000 Δfur | 0.29 | CCNA_00904 | | inositol ABC transport system, permease protein IatP | 0.26 | CCNA_00523 | | multicopper polyphenol oxidase | low | > 67 |
| Pseudomonas putida KT2440 | 0.28 | PP_2456 | | D-ribose ABC transporter - permease subunit | 0.51 | PP_0624 | | Uncharacterized protein YfiH | low | > 96 |
| Variovorax sp. OAS795 | 0.27 | ABID97_RS00430 | | ABC transporter permease | 0.40 | ABID97_RS12405 | | peptidoglycan editing factor PgeF | low | > 91 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.27 | GFF198 | | Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1) | 0.43 | GFF4798 | | COG1496: Uncharacterized conserved protein | — | — |
| Variovorax sp. SCN45 | 0.27 | GFF3691 | | ABC transporter, permease protein (cluster 2, ribose/xylose/arabinose/galactose) | 0.44 | GFF807 | | FIG00003370: Multicopper polyphenol oxidase | low | > 127 |
| Bosea sp. OAE506 | 0.27 | ABIE41_RS06850 | | ABC transporter permease | 0.23 | ABIE41_RS11450 | | peptidoglycan editing factor PgeF | low | > 77 |
| Azospirillum brasilense Sp245 | 0.27 | AZOBR_RS27940 | | ABC transporter permease | 0.22 | AZOBR_RS31175 | | polyphenol oxidase | low | > 97 |
Not shown: 3 genomes with orthologs for ECD_03636 only; 40 genomes with orthologs for ECD_02483 only