Conservation of cofitness between ECD_04037 and ECD_00764 in Escherichia coli BL21

49 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_04037 methyl-directed mismatch repair protein 1.0 ECD_00764 ATP-dependent RNA helicase 0.46 4
Escherichia coli BW25113 1.00 b4170 mutL DNA mismatch repair protein (NCBI) 1.00 b0797 rhlE RNA helicase (NCBI) low > 76
Escherichia coli ECOR27 1.00 NOLOHH_04530 mutL DNA mismatch repair endonuclease MutL 1.00 NOLOHH_22645 rhlE ATP-dependent RNA helicase RhlE low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_03872 DNA mismatch repair protein MutL 1.00 OHPLBJKB_02916 ATP-dependent RNA helicase RhlE low > 73
Escherichia coli ECRC62 1.00 BNILDI_06960 mutL DNA mismatch repair endonuclease MutL 1.00 BNILDI_20925 rhlE ATP-dependent RNA helicase RhlE low > 75
Escherichia coli ECOR38 0.99 HEPCGN_10495 mutL DNA mismatch repair endonuclease MutL 0.90 HEPCGN_01750 rhlE ATP-dependent RNA helicase RhlE low > 87
Escherichia coli ECRC100 0.99 OKFHMN_12265 mutL DNA mismatch repair endonuclease MutL 0.91 OKFHMN_06290 rhlE ATP-dependent RNA helicase RhlE low > 80
Escherichia coli ECRC98 0.99 JDDGAC_15905 mutL DNA mismatch repair endonuclease MutL 0.91 JDDGAC_09925 rhlE ATP-dependent RNA helicase RhlE low > 86
Escherichia coli ECRC99 0.99 KEDOAH_15890 mutL DNA mismatch repair endonuclease MutL 0.91 KEDOAH_21620 rhlE ATP-dependent RNA helicase RhlE — —
Escherichia coli ECRC101 0.99 MCAODC_02780 mutL DNA mismatch repair endonuclease MutL 0.91 MCAODC_25505 rhlE ATP-dependent RNA helicase RhlE low > 87
Escherichia coli Nissle 1917 0.99 ECOLIN_RS24220 DNA mismatch repair endonuclease MutL 0.90 ECOLIN_RS04245 ATP-dependent RNA helicase RhlE low > 55
Escherichia fergusonii Becca 0.99 EFB2_04365 DNA mismatch repair protein MutL 0.90 EFB2_03308 ATP-dependent RNA helicase RhlE low > 86
Escherichia coli ECRC102 0.99 NIAGMN_10115 mutL DNA mismatch repair endonuclease MutL 0.91 NIAGMN_04335 rhlE ATP-dependent RNA helicase RhlE — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.85 GFF823 DNA mismatch repair protein MutL 0.85 GFF696 ATP-dependent RNA helicase RhlE 0.53 61
Klebsiella michiganensis M5al 0.83 BWI76_RS02525 DNA mismatch repair protein MutL 0.81 BWI76_RS08915 ATP-dependent RNA helicase RhlE low > 92
Enterobacter sp. TBS_079 0.81 MPMX20_00451 DNA mismatch repair protein MutL 0.84 MPMX20_01425 ATP-dependent RNA helicase RhlE low > 85
Enterobacter asburiae PDN3 0.80 EX28DRAFT_3367 DNA mismatch repair protein MutL 0.84 EX28DRAFT_2194 Superfamily II DNA and RNA helicases low > 76
Pantoea sp. MT58 0.67 IAI47_02580 DNA mismatch repair endonuclease MutL 0.75 IAI47_13435 ATP-dependent RNA helicase RhlE low > 76
Serratia liquefaciens MT49 0.67 IAI46_01615 DNA mismatch repair endonuclease MutL 0.76 IAI46_06620 ATP-dependent RNA helicase RhlE low > 86
Erwinia tracheiphila SCR3 0.65 LU632_RS02045 mutL DNA mismatch repair endonuclease MutL 0.79 LU632_RS09215 rhlE ATP-dependent RNA helicase RhlE low > 74
Rahnella sp. WP5 0.65 EX31_RS08830 DNA mismatch repair endonuclease MutL 0.75 EX31_RS23775 ATP-dependent RNA helicase RhlE low > 89
Pectobacterium carotovorum WPP14 0.64 HER17_RS02575 DNA mismatch repair endonuclease MutL 0.74 HER17_RS13325 ATP-dependent RNA helicase RhlE low > 75
Dickeya dadantii 3937 0.62 DDA3937_RS18620 DNA mismatch repair endonuclease MutL 0.76 DDA3937_RS08645 ATP-dependent RNA helicase RhlE 0.60 17
Dickeya dianthicola ME23 0.61 DZA65_RS19690 DNA mismatch repair endonuclease MutL 0.76 DZA65_RS09075 ATP-dependent RNA helicase RhlE low > 75
Dickeya dianthicola 67-19 0.61 HGI48_RS18555 DNA mismatch repair endonuclease MutL 0.76 HGI48_RS08785 ATP-dependent RNA helicase RhlE low > 71
Vibrio cholerae E7946 ATCC 55056 0.45 CSW01_01825 DNA mismatch repair protein MutL 0.53 CSW01_15010 ATP-dependent RNA helicase RhlE low > 62
Shewanella amazonensis SB2B 0.39 Sama_3027 mutL DNA mismatch repair protein (RefSeq) 0.56 Sama_2687 DEAD-box ATP dependent DNA helicase (RefSeq) low > 62
Shewanella oneidensis MR-1 0.39 SO0601 mutL DNA mismatch repair protein MutL (NCBI ptt file) 0.56 SO3783 ATP-dependent RNA helicase, DEAD box family (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.38 Shew_0564 DNA mismatch repair protein MutL (RefSeq) 0.56 Shew_0604 DEAD/DEAH box helicase domain-containing protein (RefSeq) low > 60
Marinobacter adhaerens HP15 0.35 HP15_2501 DNA mismatch repair protein mutL 0.58 HP15_3607 DEAD/DEAH box helicase domain protein low > 73
Xanthomonas campestris pv. campestris strain 8004 0.31 Xcc-8004.2256.1 DNA mismatch repair protein MutL 0.50 Xcc-8004.4527.1 ATP-dependent RNA helicase RhlE low > 74
Dyella japonica UNC79MFTsu3.2 0.30 ABZR86_RS00855 DNA mismatch repair endonuclease MutL 0.48 ABZR86_RS08975 DEAD/DEAH box helicase low > 74
Rhodanobacter denitrificans MT42 0.30 LRK55_RS14865 DNA mismatch repair endonuclease MutL 0.48 LRK55_RS02395 DEAD/DEAH box helicase low > 63
Rhodanobacter denitrificans FW104-10B01 0.30 LRK54_RS15150 DNA mismatch repair endonuclease MutL 0.48 LRK54_RS02640 DEAD/DEAH box helicase low > 59
Rhodanobacter sp. FW510-T8 0.30 OKGIIK_03920 mutL DNA mismatch repair endonuclease MutL 0.48 OKGIIK_09690 srmB RNA helicase low > 52
Ralstonia solanacearum GMI1000 0.28 RS_RS12850 DNA mismatch repair protein MutL 0.62 RS_RS02695 RNA helicase low > 80
Herbaspirillum seropedicae SmR1 0.28 HSERO_RS04190 DNA mismatch repair protein 0.58 HSERO_RS08565 RNA helicase low > 78
Dechlorosoma suillum PS 0.27 Dsui_1551 DNA mismatch repair protein MutL 0.53 Dsui_3174 DNA/RNA helicase, superfamily II low > 51
Paraburkholderia bryophila 376MFSha3.1 0.25 H281DRAFT_04712 DNA mismatch repair protein MutL 0.61 H281DRAFT_04222 ATP-dependent RNA helicase RhlE low > 103
Burkholderia phytofirmans PsJN 0.25 BPHYT_RS03650 DNA mismatch repair protein 0.61 BPHYT_RS16445 RNA helicase low > 109
Castellaniella sp019104865 MT123 0.25 ABCV34_RS08785 DNA mismatch repair endonuclease MutL 0.55 ABCV34_RS12515 DEAD/DEAH box helicase low > 48
Magnetospirillum magneticum AMB-1 0.24 AMB_RS22340 DNA mismatch repair protein MutL 0.45 AMB_RS07215 ATP-dependent helicase low > 64
Rhodospirillum rubrum S1H 0.22 Rru_A2946 DNA mismatch repair protein (NCBI) 0.38 Rru_A1915 DEAD/DEAH box helicase (NCBI) low > 58
Phaeobacter inhibens DSM 17395 0.21 PGA1_c32740 DNA mismatch repair protein MutL 0.39 PGA1_c11390 putative ATP-dependent RNA helicase RhlE low > 62
Pontibacter actiniarum KMM 6156, DSM 19842 0.20 CA264_13305 DNA mismatch repair protein MutL 0.42 CA264_02200 DEAD/DEAH box helicase — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.20 ABZR88_RS00380 DNA mismatch repair endonuclease MutL 0.47 ABZR88_RS16030 DEAD/DEAH box helicase — —
Bosea sp. OAE506 0.19 ABIE41_RS23235 DNA mismatch repair endonuclease MutL 0.42 ABIE41_RS22380 DEAD/DEAH box helicase low > 77
Bacteroides stercoris CC31F 0.17 HMPREF1181_RS07405 DNA mismatch repair endonuclease MutL 0.45 HMPREF1181_RS03715 DEAD/DEAH box helicase — —
Bacteroides ovatus ATCC 8483 0.17 BACOVA_00344 DNA mismatch repair domain protein 0.45 BACOVA_01521 DEAD/DEAH box helicase — —
Bacteroides thetaiotaomicron VPI-5482 0.16 BT3851 DNA mismatch repair protein mutL (NCBI ptt file) 0.45 BT1885 putative ATP-dependent RNA helicase (NCBI ptt file) — —

Not shown: 30 genomes with orthologs for ECD_04037 only; 14 genomes with orthologs for ECD_00764 only