| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Escherichia coli BL21 | 1.0 | ECD_02630 | | 23S rRNA m(5)U1939 methyltransferase, SAM-dependent | 1.0 | ECD_00415 | | transcriptional repressor | 0.56 | 7 |
| Escherichia coli BW25113 | 1.00 | b2785 | rumA | 23S rRNA (uracil-5-)-methyltransferase (NCBI) | 1.00 | b0464 | acrR | DNA-binding transcriptional repressor (NCBI) | low | > 76 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 1.00 | OHPLBJKB_00946 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 1.00 | OHPLBJKB_03210 | | HTH-type transcriptional regulator AcrR | low | > 73 |
| Escherichia coli ECRC62 | 0.99 | BNILDI_10625 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 1.00 | BNILDI_22545 | acrR | multidrug efflux transporter transcriptional repressor AcrR | low | > 75 |
| Escherichia coli ECOR27 | 0.99 | NOLOHH_12120 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 1.00 | NOLOHH_01130 | acrR | multidrug efflux transporter transcriptional repressor AcrR | low | > 75 |
| Escherichia coli Nissle 1917 | 0.99 | ECOLIN_RS15520 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 1.00 | ECOLIN_RS02760 | | multidrug efflux transporter transcriptional repressor AcrR | low | > 55 |
| Escherichia coli ECRC101 | 0.99 | MCAODC_10770 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 1.00 | MCAODC_27420 | acrR | multidrug efflux transporter transcriptional repressor AcrR | low | > 87 |
| Escherichia coli ECRC98 | 0.99 | JDDGAC_23910 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 1.00 | JDDGAC_11845 | acrR | multidrug efflux transporter transcriptional repressor AcrR | low | > 86 |
| Escherichia coli ECRC100 | 0.99 | OKFHMN_20245 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.99 | OKFHMN_08195 | acrR | multidrug efflux transporter transcriptional repressor AcrR | low | > 80 |
| Escherichia coli ECRC102 | 0.99 | NIAGMN_18015 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.99 | NIAGMN_06250 | acrR | multidrug efflux transporter transcriptional repressor AcrR | — | — |
| Escherichia coli ECRC99 | 0.99 | KEDOAH_07885 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 1.00 | KEDOAH_19770 | acrR | multidrug efflux transporter transcriptional repressor AcrR | — | — |
| Escherichia fergusonii Becca | 0.98 | EFB2_01132 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 1.00 | EFB2_03594 | | HTH-type transcriptional regulator AcrR | low | > 86 |
| Escherichia coli ECOR38 | 0.98 | HEPCGN_19495 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 1.00 | HEPCGN_06810 | acrR | multidrug efflux transporter transcriptional repressor AcrR | low | > 87 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.85 | GFF4838 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) | 0.88 | GFF4381 | | Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family | low | > 78 |
| Enterobacter asburiae PDN3 | 0.80 | EX28DRAFT_2865 | | 23S rRNA (uracil-5-)-methyltransferase RumA | 0.83 | EX28DRAFT_2494 | | transcriptional regulator, TetR family | low | > 76 |
| Enterobacter sp. TBS_079 | 0.80 | MPMX20_03654 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.72 | MPMX20_01066 | | HTH-type transcriptional regulator AcrR | low | > 85 |
| Klebsiella michiganensis M5al | 0.79 | BWI76_RS22810 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase | 0.80 | BWI76_RS06785 | | DNA-binding transcriptional repressor AcrR | low | > 92 |
| Dickeya dianthicola ME23 | 0.66 | DZA65_RS18150 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.59 | DZA65_RS06125 | | multidrug efflux transporter transcriptional repressor AcrR | low | > 75 |
| Dickeya dianthicola 67-19 | 0.66 | HGI48_RS17075 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.58 | HGI48_RS05800 | | multidrug efflux transporter transcriptional repressor AcrR | low | > 71 |
| Dickeya dadantii 3937 | 0.65 | DDA3937_RS17020 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.59 | DDA3937_RS05745 | | multidrug efflux transporter transcriptional repressor AcrR | low | > 74 |
| Pectobacterium carotovorum WPP14 | 0.64 | HER17_RS04110 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.59 | HER17_RS15730 | | multidrug efflux transporter transcriptional repressor AcrR | low | > 75 |
| Pantoea sp. MT58 | 0.64 | IAI47_04115 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.60 | IAI47_14505 | | multidrug efflux transporter transcriptional repressor AcrR | low | > 76 |
| Serratia liquefaciens MT49 | 0.63 | IAI46_03595 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.66 | IAI46_05195 | | multidrug efflux transporter transcriptional repressor AcrR | low | > 86 |
| Rahnella sp. WP5 | 0.62 | EX31_RS07960 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.59 | EX31_RS22480 | | multidrug efflux transporter transcriptional repressor AcrR | low | > 89 |
| Erwinia tracheiphila SCR3 | 0.59 | LU632_RS06345 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.59 | LU632_RS18175 | acrR | multidrug efflux transporter transcriptional repressor AcrR | low | > 74 |
| Marinobacter adhaerens HP15 | 0.36 | HP15_790 | | 23S rRNA 5-methyluridine methyltransferase | 0.22 | HP15_3151 | | transcriptional regulator, TetR family | low | > 73 |
| Pseudomonas simiae WCS417 | 0.34 | PS417_20155 | | 23S rRNA methyltransferase | 0.38 | PS417_06780 | | TetR family transcriptional regulator | low | > 88 |
| Pseudomonas sp. S08-1 | 0.33 | OH686_18955 | | 23S rRNA (uracil-5-)-methyltransferase RumA | 0.38 | OH686_16040 | | Transcriptional regulator, AcrR family | low | > 80 |
| Pseudomonas fluorescens SBW25 | 0.33 | PFLU_RS22100 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.39 | PFLU_RS06815 | | TetR family transcriptional regulator | 0.78 | 20 |
| Pseudomonas fluorescens SBW25-INTG | 0.33 | PFLU_RS22100 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.39 | PFLU_RS06815 | | TetR family transcriptional regulator | low | > 109 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.32 | Psyr_3696 | | 23S rRNA m(5)U-1939 methyltransferase | 0.37 | Psyr_4006 | | transcriptional regulator, TetR family | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.32 | Psyr_3696 | | 23S rRNA m(5)U-1939 methyltransferase | 0.37 | Psyr_4006 | | transcriptional regulator, TetR family | low | > 86 |
| Pseudomonas sp. RS175 | 0.32 | PFR28_03224 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.38 | PFR28_00633 | | HTH-type transcriptional regulator TtgR | 0.65 | 5 |
| Pseudomonas fluorescens FW300-N1B4 | 0.32 | Pf1N1B4_3507 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 | 0.39 | Pf1N1B4_3248 | | Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family | low | > 87 |
| Dechlorosoma suillum PS | 0.32 | Dsui_1981 | | 23S rRNA (uracil-5-)-methyltransferase RumA | 0.24 | Dsui_1873 | | transcriptional regulator | low | > 51 |
| Pseudomonas fluorescens FW300-N2C3 | 0.32 | AO356_19055 | | 23S rRNA methyltransferase | 0.38 | AO356_04870 | | TetR family transcriptional regulator | 0.25 | 72 |
| Acidovorax sp. GW101-3H11 | 0.31 | Ac3H11_2847 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) | 0.28 | Ac3H11_4450 | | Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family | low | > 79 |
| Ralstonia sp. UNC404CL21Col | 0.31 | ABZR87_RS10885 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.27 | ABZR87_RS05305 | | TetR family transcriptional regulator | low | > 80 |
| Pseudomonas fluorescens FW300-N2E2 | 0.31 | Pf6N2E2_5722 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 | 0.37 | Pf6N2E2_2822 | | Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family | 0.28 | 92 |
| Herbaspirillum seropedicae SmR1 | 0.31 | HSERO_RS14825 | | 23S rRNA methyltransferase | 0.34 | HSERO_RS02420 | | TetR family transcriptional regulator | — | — |
| Burkholderia phytofirmans PsJN | 0.31 | BPHYT_RS09125 | | 23S rRNA methyltransferase | 0.37 | BPHYT_RS16180 | | TetR family transcriptional regulator | low | > 109 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.31 | H281DRAFT_00846 | | 23S rRNA m(5)U-1939 methyltransferase | 0.35 | H281DRAFT_04172 | | transcriptional regulator, TetR family | low | > 103 |
| Cupriavidus basilensis FW507-4G11 | 0.31 | RR42_RS13170 | | 23S rRNA methyltransferase | 0.34 | RR42_RS20640 | | TetR family transcriptional regulator | low | > 128 |
| Ralstonia solanacearum GMI1000 | 0.31 | RS_RS06055 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.29 | RS_RS00055 | | TetR family transcriptional regulator | low | > 80 |
| Pseudomonas fluorescens FW300-N2E3 | 0.30 | AO353_02715 | | 23S rRNA methyltransferase | 0.39 | AO353_17305 | | TetR family transcriptional regulator | low | > 101 |
| Ralstonia solanacearum IBSBF1503 | 0.30 | RALBFv3_RS15245 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.29 | RALBFv3_RS09455 | | TetR family transcriptional regulator | low | > 76 |
| Ralstonia solanacearum UW163 | 0.30 | UW163_RS12710 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.29 | UW163_RS04125 | | TetR family transcriptional regulator | — | — |
| Pseudomonas putida KT2440 | 0.30 | PP_1655 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.35 | PP_1387 | | Probable HTH-type transcriptional regulator TtgR | low | > 96 |
| Ralstonia solanacearum PSI07 | 0.30 | RPSI07_RS18130 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.29 | RPSI07_RS23895 | | TetR family transcriptional regulator | low | > 81 |
| Pseudomonas fluorescens GW456-L13 | 0.30 | PfGW456L13_2033 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 | 0.36 | PfGW456L13_4579 | | Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family | low | > 87 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.30 | GFF3883 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) | 0.30 | GFF3838 | | Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family | low | > 90 |
| Paraburkholderia sabiae LMG 24235 | 0.29 | QEN71_RS22225 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.36 | QEN71_RS02515 | | TetR family transcriptional regulator | low | > 153 |
| Variovorax sp. SCN45 | 0.28 | GFF2841 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase (EC 2.1.1.190) | 0.27 | GFF3727 | | Transcriptional regulator, AcrR family | low | > 127 |
| Rhodopseudomonas palustris CGA009 | 0.15 | TX73_004885 | | methyltransferase | 0.17 | TX73_021215 | | TetR family transcriptional regulator | low | > 86 |
| Sinorhizobium meliloti 1021 | 0.14 | SMc00974 | | RNA methyltransferase | 0.22 | SMc02866 | | transcriptional regulator | low | > 103 |
| Agrobacterium fabrum C58 | 0.14 | Atu0735 | | RNA methyltransferase | 0.22 | Atu3201 | | TetR family transcriptional regulator | low | > 89 |
Not shown: 41 genomes with orthologs for ECD_02630 only; 2 genomes with orthologs for ECD_00415 only