| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Escherichia coli BL21 | 1.0 | ECD_00806 | | D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6a | 1.0 | ECD_00147 | | putative ATP-dependent helicase | 0.55 | 2 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 1.00 | OHPLBJKB_02871 | | D-alanyl-D-alanine carboxypeptidase DacC | 0.98 | OHPLBJKB_03514 | | hypothetical protein | low | > 73 |
| Escherichia coli BW25113 | 1.00 | b0839 | dacC | D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a) (NCBI) | 0.98 | b0148 | hrpB | helicase, ATP-dependent (VIMSS) | low | > 76 |
| Escherichia coli Nissle 1917 | 1.00 | ECOLIN_RS04460 | | serine-type D-Ala-D-Ala carboxypeptidase | 0.95 | ECOLIN_RS00830 | | ATP-dependent helicase HrpB | — | — |
| Escherichia coli ECOR27 | 1.00 | NOLOHH_22410 | dacC | serine-type D-Ala-D-Ala carboxypeptidase | 0.98 | NOLOHH_02675 | hrpB | ATP-dependent helicase HrpB | low | > 75 |
| Escherichia coli ECRC99 | 1.00 | KEDOAH_21870 | dacC | serine-type D-Ala-D-Ala carboxypeptidase | 0.95 | KEDOAH_17825 | hrpB | ATP-dependent helicase HrpB | — | — |
| Escherichia coli ECRC101 | 1.00 | MCAODC_25255 | dacC | serine-type D-Ala-D-Ala carboxypeptidase | 0.95 | MCAODC_00845 | hrpB | ATP-dependent helicase HrpB | low | > 87 |
| Escherichia coli ECOR38 | 1.00 | HEPCGN_01990 | dacC | serine-type D-Ala-D-Ala carboxypeptidase | 0.95 | HEPCGN_08280 | hrpB | ATP-dependent helicase HrpB | low | > 87 |
| Escherichia coli ECRC62 | 1.00 | BNILDI_20670 | dacC | serine-type D-Ala-D-Ala carboxypeptidase | 0.98 | BNILDI_08995 | hrpB | ATP-dependent helicase HrpB | low | > 75 |
| Escherichia coli ECRC102 | 1.00 | NIAGMN_04085 | dacC | serine-type D-Ala-D-Ala carboxypeptidase | 0.95 | NIAGMN_08180 | hrpB | ATP-dependent helicase HrpB | — | — |
| Escherichia coli ECRC100 | 1.00 | OKFHMN_06040 | dacC | serine-type D-Ala-D-Ala carboxypeptidase | 0.95 | OKFHMN_10330 | hrpB | ATP-dependent helicase HrpB | low | > 80 |
| Escherichia coli ECRC98 | 1.00 | JDDGAC_09675 | dacC | serine-type D-Ala-D-Ala carboxypeptidase | 0.95 | JDDGAC_13925 | hrpB | ATP-dependent helicase HrpB | low | > 86 |
| Escherichia fergusonii Becca | 1.00 | EFB2_03267 | | D-alanyl-D-alanine carboxypeptidase DacC | 0.95 | EFB2_03896 | | ATP-dependent RNA helicase HrpB | low | > 86 |
| Enterobacter asburiae PDN3 | 0.90 | EX28DRAFT_2127 | | D-alanyl-D-alanine carboxypeptidase | 0.81 | EX28DRAFT_3737 | | ATP-dependent helicase HrpB | low | > 76 |
| Enterobacter sp. TBS_079 | 0.90 | MPMX20_01477 | | D-alanyl-D-alanine carboxypeptidase DacC | 0.79 | MPMX20_00834 | | ATP-dependent RNA helicase HrpB | low | > 85 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.86 | GFF744 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | 0.83 | GFF84 | | ATP-dependent helicase HrpB | low | > 78 |
| Klebsiella michiganensis M5al | 0.85 | BWI76_RS09145 | | serine-type D-Ala-D-Ala carboxypeptidase | 0.79 | BWI76_RS05030 | | ATP-dependent helicase | low | > 92 |
| Pantoea sp. MT58 | 0.75 | IAI47_13090 | | serine hydrolase | 0.61 | IAI47_15620 | | ATP-dependent helicase HrpB | low | > 76 |
| Pectobacterium carotovorum WPP14 | 0.72 | HER17_RS12545 | | serine hydrolase | 0.59 | HER17_RS05595 | | ATP-dependent helicase HrpB | low | > 75 |
| Serratia liquefaciens MT49 | 0.71 | IAI46_08285 | | serine hydrolase | 0.65 | IAI46_21195 | | ATP-dependent helicase HrpB | low | > 86 |
| Dickeya dadantii 3937 | 0.68 | DDA3937_RS09420 | | serine hydrolase | 0.58 | DDA3937_RS15920 | | ATP-dependent helicase HrpB | low | > 74 |
| Dickeya dianthicola 67-19 | 0.68 | HGI48_RS09435 | | serine hydrolase | 0.59 | HGI48_RS16035 | | ATP-dependent helicase HrpB | low | > 71 |
| Dickeya dianthicola ME23 | 0.67 | DZA65_RS09745 | | D-alanyl-D-alanine carboxypeptidase | 0.58 | DZA65_RS17120 | | ATP-dependent helicase HrpB | low | > 75 |
| Rahnella sp. WP5 | 0.65 | EX31_RS09695 | | D-alanyl-D-alanine carboxypeptidase | 0.62 | EX31_RS03235 | | ATP-dependent helicase HrpB | low | > 89 |
| Alteromonas macleodii MIT1002 | 0.47 | MIT1002_01848 | | D-alanyl-D-alanine carboxypeptidase DacC precursor | 0.27 | MIT1002_00406 | | ATP-dependent RNA helicase HrpB | — | — |
| Pseudomonas putida KT2440 | 0.42 | PP_4803 | | D-alanyl-D-alanine carboxypeptidase | 0.37 | PP_4772 | | ATP-dependent helicase HrpB | low | > 96 |
| Pseudomonas sp. RS175 | 0.42 | PFR28_03864 | | D-alanyl-D-alanine carboxypeptidase DacC | 0.38 | PFR28_03833 | | ATP-dependent RNA helicase HrpB | low | > 88 |
| Pseudomonas fluorescens SBW25 | 0.42 | PFLU_RS26635 | | D-alanyl-D-alanine carboxypeptidase | 0.39 | PFLU_RS26480 | | ATP-dependent helicase HrpB | low | > 109 |
| Pseudomonas fluorescens FW300-N2C3 | 0.42 | AO356_15330 | | D-alanyl-D-alanine carboxypeptidase | 0.38 | AO356_15485 | | ATP-dependent helicase | low | > 104 |
| Pseudomonas fluorescens SBW25-INTG | 0.42 | PFLU_RS26635 | | D-alanyl-D-alanine carboxypeptidase | 0.39 | PFLU_RS26480 | | ATP-dependent helicase HrpB | low | > 109 |
| Pseudomonas fluorescens FW300-N2E2 | 0.42 | Pf6N2E2_5001 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | 0.39 | Pf6N2E2_5038 | | ATP-dependent helicase HrpB | low | > 103 |
| Pseudomonas fluorescens FW300-N1B4 | 0.42 | Pf1N1B4_2696 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | 0.38 | Pf1N1B4_2728 | | ATP-dependent helicase HrpB | — | — |
| Pseudomonas simiae WCS417 | 0.41 | PS417_24705 | | D-alanyl-D-alanine carboxypeptidase | 0.39 | PS417_24550 | | ATP-dependent helicase | low | > 88 |
| Pseudomonas fluorescens FW300-N2E3 | 0.41 | AO353_06455 | | D-alanyl-D-alanine carboxypeptidase | 0.38 | AO353_06300 | | ATP-dependent helicase | low | > 101 |
| Pseudomonas stutzeri RCH2 | 0.41 | Psest_0516 | | D-alanyl-D-alanine carboxypeptidase | 0.37 | Psest_0629 | | ATP-dependent helicase HrpB | low | > 67 |
| Pseudomonas fluorescens GW456-L13 | 0.41 | PfGW456L13_1364 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | 0.38 | PfGW456L13_1395 | | ATP-dependent helicase HrpB | — | — |
| Pseudomonas sp. S08-1 | 0.41 | OH686_09300 | | D-alanyl-D-alanine carboxypeptidase | 0.39 | OH686_08800 | | ATP-dependent helicase HrpB | low | > 80 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.41 | Psyr_4361 | | penicillin-binding protein 6, Serine peptidase, MEROPS family S11 | 0.37 | Psyr_4320 | | ATP-dependent helicase HrpB | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.41 | Psyr_4361 | | penicillin-binding protein 6, Serine peptidase, MEROPS family S11 | 0.37 | Psyr_4320 | | ATP-dependent helicase HrpB | low | > 86 |
| Rhodanobacter sp. FW510-T8 | 0.40 | OKGIIK_00090 | | serine-type D-Ala-D-Ala carboxypeptidase | 0.34 | OKGIIK_16270 | hrpA | HrpA-like RNA helicase | — | — |
| Lysobacter sp. OAE881 | 0.40 | ABIE51_RS03165 | | D-alanyl-D-alanine carboxypeptidase family protein | 0.33 | ABIE51_RS00675 | | ATP-dependent helicase HrpB | low | > 62 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.40 | Xcc-8004.907.1 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | 0.32 | Xcc-8004.354.1 | | macromolecule metabolism; macromolecule synthesis, modification; dna - replication, repair, restr./modif. | low | > 74 |
| Dyella japonica UNC79MFTsu3.2 | 0.40 | ABZR86_RS17490 | | D-alanyl-D-alanine carboxypeptidase family protein | 0.34 | ABZR86_RS13060 | | ATP-dependent helicase HrpB | — | — |
| Rhodanobacter denitrificans FW104-10B01 | 0.40 | LRK54_RS06490 | | D-alanyl-D-alanine carboxypeptidase | 0.33 | LRK54_RS10015 | | ATP-dependent helicase HrpB | low | > 59 |
| Rhodanobacter denitrificans MT42 | 0.40 | LRK55_RS06235 | | D-alanyl-D-alanine carboxypeptidase family protein | 0.33 | LRK55_RS09655 | | ATP-dependent helicase HrpB | — | — |
| Marinobacter adhaerens HP15 | 0.39 | HP15_608 | | serine-type D-Ala-D-Ala carboxypeptidase | 0.41 | HP15_3782 | | RNA helicase, ATP-dependent DEAH box, HrpB type | — | — |
| Rhodospirillum rubrum S1H | 0.31 | Rru_A1704 | | Serine-type D-Ala-D-Ala carboxypeptidase (NCBI) | 0.32 | Rru_A2365 | | ATP-dependent helicase HrpB (NCBI) | — | — |
| Azospirillum sp. SherDot2 | 0.29 | MPMX19_01465 | | D-alanyl-D-alanine carboxypeptidase DacC | 0.37 | MPMX19_00095 | | ATP-dependent RNA helicase HrpB | — | — |
| Magnetospirillum magneticum AMB-1 | 0.28 | AMB_RS12315 | | D-alanyl-D-alanine carboxypeptidase | 0.37 | AMB_RS06395 | | ATP-dependent helicase HrpB | — | — |
| Bosea sp. OAE506 | 0.27 | ABIE41_RS15965 | | D-alanyl-D-alanine carboxypeptidase family protein | 0.36 | ABIE41_RS03925 | | ATP-dependent helicase HrpB | — | — |
| Rhodopseudomonas palustris CGA009 | 0.27 | TX73_014370 | | D-alanyl-D-alanine carboxypeptidase | 0.38 | TX73_002770 | | ATP-dependent helicase HrpB | low | > 86 |
| Sphingomonas koreensis DSMZ 15582 | 0.27 | Ga0059261_0122 | | D-alanyl-D-alanine carboxypeptidase | 0.31 | Ga0059261_2125 | | ATP-dependent helicase HrpB | — | — |
| Phaeobacter inhibens DSM 17395 | 0.24 | PGA1_c08020 | | D-alanyl-D-alanine carboxypeptidase DacC | 0.32 | PGA1_c24190 | | ATP-dependent RNA helicase HrpB | — | — |
| Dinoroseobacter shibae DFL-12 | 0.22 | Dshi_0923 | | Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq) | 0.33 | Dshi_2580 | | ATP-dependent helicase HrpB (RefSeq) | — | — |
| Rhizobium sp. OAE497 | 0.21 | ABIE40_RS09505 | | D-alanyl-D-alanine carboxypeptidase family protein | 0.35 | ABIE40_RS19515 | | ATP-dependent helicase HrpB | low | > 107 |
Not shown: 19 genomes with orthologs for ECD_00806 only; 14 genomes with orthologs for ECD_00147 only