Conservation of cofitness between DDA3937_RS15930 and DDA3937_RS18260 in Dickeya dadantii 3937

54 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Dickeya dadantii 3937 1.0 DDA3937_RS15930 DNA/RNA nuclease SfsA 1.0 DDA3937_RS18260 4-hydroxythreonine-4-phosphate dehydrogenase PdxA 0.60 17
Dickeya dianthicola 67-19 0.97 HGI48_RS16045 DNA/RNA nuclease SfsA 0.96 HGI48_RS18195 4-hydroxythreonine-4-phosphate dehydrogenase PdxA low > 71
Dickeya dianthicola ME23 0.97 DZA65_RS17130 DNA/RNA nuclease SfsA 0.95 DZA65_RS19335 4-hydroxythreonine-4-phosphate dehydrogenase PdxA low > 75
Pectobacterium carotovorum WPP14 0.70 HER17_RS05585 DNA/RNA nuclease SfsA 0.80 HER17_RS02965 4-hydroxythreonine-4-phosphate dehydrogenase PdxA low > 75
Rahnella sp. WP5 0.68 EX31_RS03245 DNA/RNA nuclease SfsA 0.75 EX31_RS03775 4-hydroxythreonine-4-phosphate dehydrogenase PdxA low > 89
Serratia liquefaciens MT49 0.68 IAI46_21205 DNA/RNA nuclease SfsA 0.77 IAI46_03250 4-hydroxythreonine-4-phosphate dehydrogenase PdxA low > 86
Enterobacter sp. TBS_079 0.67 MPMX20_00832 Sugar fermentation stimulation protein A 0.71 MPMX20_00748 4-hydroxythreonine-4-phosphate dehydrogenase low > 85
Escherichia coli ECRC62 0.66 BNILDI_08985 sfsA DNA/RNA nuclease SfsA 0.75 BNILDI_08430 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase PdxA low > 75
Escherichia coli ECOR27 0.66 NOLOHH_02685 sfsA DNA/RNA nuclease SfsA 0.74 NOLOHH_03175 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase PdxA low > 75
Escherichia coli ECRC98 0.66 JDDGAC_13935 sfsA DNA/RNA nuclease SfsA 0.74 JDDGAC_14425 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase PdxA low > 86
Escherichia coli ECRC102 0.66 NIAGMN_08190 sfsA DNA/RNA nuclease SfsA 0.74 NIAGMN_08680 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase PdxA — —
Escherichia coli ECRC101 0.66 MCAODC_00855 sfsA DNA/RNA nuclease SfsA 0.74 MCAODC_01345 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase PdxA low > 87
Escherichia coli BL21 0.66 ECD_00145 sugar fermentation stimulation protein A 0.74 ECD_00056 4-hydroxy-L-threonine phosphate dehydrogenase, NAD-dependent low > 61
Escherichia coli ECRC100 0.66 OKFHMN_10340 sfsA DNA/RNA nuclease SfsA 0.74 OKFHMN_10830 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase PdxA low > 80
Escherichia coli ECRC99 0.66 KEDOAH_17815 sfsA DNA/RNA nuclease SfsA 0.74 KEDOAH_17325 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase PdxA — —
Escherichia coli BW25113 0.66 b0146 sfsA sugar fermentation stimulation protein A (NCBI) 0.74 b0052 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.66 OHPLBJKB_03516 Sugar fermentation stimulation protein A 0.74 OHPLBJKB_03604 4-hydroxythreonine-4-phosphate dehydrogenase low > 73
Escherichia coli ECOR38 0.66 HEPCGN_08290 sfsA DNA/RNA nuclease SfsA 0.74 HEPCGN_08820 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase PdxA low > 87
Klebsiella michiganensis M5al 0.66 BWI76_RS05020 sugar fermentation stimulation protein SfsA 0.72 BWI76_RS04525 4-hydroxythreonine-4-phosphate dehydrogenase PdxA low > 92
Escherichia coli Nissle 1917 0.65 ECOLIN_RS00820 DNA/RNA nuclease SfsA 0.74 ECOLIN_RS00290 4-hydroxythreonine-4-phosphate dehydrogenase PdxA — —
Enterobacter asburiae PDN3 0.65 EX28DRAFT_3735 sugar fermentation stimulation protein 0.72 EX28DRAFT_3646 4-hydroxythreonine-4-phosphate dehydrogenase low > 76
Escherichia fergusonii Becca 0.65 EFB2_03898 Sugar fermentation stimulation protein A 0.74 EFB2_03991 4-hydroxythreonine-4-phosphate dehydrogenase low > 86
Pantoea sp. MT58 0.65 IAI47_15630 DNA/RNA nuclease SfsA 0.76 IAI47_16080 4-hydroxythreonine-4-phosphate dehydrogenase PdxA low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.64 GFF86 Sugar/maltose fermentation stimulation protein homolog 0.73 GFF189 4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262) low > 78
Erwinia tracheiphila SCR3 0.64 LU632_RS20075 sfsA DNA/RNA nuclease SfsA 0.76 LU632_RS02725 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase PdxA — —
Vibrio cholerae E7946 ATCC 55056 0.60 CSW01_03160 DNA/RNA nuclease SfsA 0.61 CSW01_02330 4-hydroxythreonine-4-phosphate dehydrogenase — —
Shewanella loihica PV-4 0.57 Shew_3128 sugar fermentation stimulation protein (RefSeq) 0.65 Shew_0880 4-hydroxythreonine-4-phosphate dehydrogenase (RefSeq) — —
Shewanella oneidensis MR-1 0.54 SO0875 sfsA sugar fermentation stimulation protein (NCBI ptt file) 0.63 SO3638 pdxA pyridoxal phosphate biosynthetic protein PdxA (NCBI ptt file) — —
Shewanella amazonensis SB2B 0.54 Sama_0781 sugar fermentation stimulation protein A (RefSeq) 0.66 Sama_2818 4-hydroxythreonine-4-phosphate dehydrogenase (RefSeq) — —
Shewanella sp. ANA-3 0.54 Shewana3_3403 sugar fermentation stimulation protein A (RefSeq) 0.63 Shewana3_3208 4-hydroxythreonine-4-phosphate dehydrogenase (RefSeq) — —
Kangiella aquimarina DSM 16071 0.51 B158DRAFT_0055 sugar fermentation stimulation protein 0.55 B158DRAFT_0789 4-hydroxythreonine-4-phosphate dehydrogenase — —
Marinobacter adhaerens HP15 0.47 HP15_333 sugar fermentation stimulation protein-like protein 0.54 HP15_3279 4-hydroxythreonine-4-phosphate dehydrogenase — —
Pseudomonas putida KT2440 0.45 PP_4691 sugar fermentation stimulation protein A 0.58 PP_0402 4-hydroxythreonine-4-phosphate dehydrogenase — —
Pseudomonas syringae pv. syringae B728a 0.45 Psyr_0837 Sugar fermentation stimulation protein 0.56 Psyr_4626 4-hydroxythreonine-4-phosphate dehydrogenase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.45 Psyr_0837 Sugar fermentation stimulation protein 0.56 Psyr_4626 4-hydroxythreonine-4-phosphate dehydrogenase — —
Pseudomonas fluorescens FW300-N2E2 0.44 Pf6N2E2_5162 Sugar/maltose fermentation stimulation protein homolog 0.58 Pf6N2E2_4806 4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262) — —
Pseudomonas sp. RS175 0.44 PFR28_03712 Sugar fermentation stimulation protein A 0.58 PFR28_04063 4-hydroxythreonine-4-phosphate dehydrogenase — —
Dechlorosoma suillum PS 0.44 Dsui_0297 sugar fermentation stimulation protein 0.50 Dsui_1585 4-hydroxythreonine-4-phosphate dehydrogenase — —
Pseudomonas fluorescens SBW25-INTG 0.43 PFLU_RS25705 DNA/RNA nuclease SfsA 0.60 PFLU_RS27460 4-hydroxythreonine-4-phosphate dehydrogenase PdxA — —
Pseudomonas fluorescens SBW25 0.43 PFLU_RS25705 DNA/RNA nuclease SfsA 0.60 PFLU_RS27460 4-hydroxythreonine-4-phosphate dehydrogenase PdxA — —
Pseudomonas fluorescens FW300-N2C3 0.43 AO356_16105 XRE family transcriptional regulator 0.57 AO356_14340 4-hydroxythreonine-4-phosphate dehydrogenase — —
Alteromonas macleodii MIT1002 0.43 MIT1002_03689 Sugar fermentation stimulation protein A 0.62 MIT1002_00782 4-hydroxythreonine-4-phosphate dehydrogenase — —
Pseudomonas sp. S08-1 0.42 OH686_17290 sugar fermentation stimulation protein 0.56 OH686_15045 4-hydroxythreonine-4-phosphate dehydrogenase PdxA — —
Pseudomonas stutzeri RCH2 0.42 Psest_1005 sugar fermentation stimulation protein 0.58 Psest_3667 4-hydroxythreonine-4-phosphate dehydrogenase — —
Pseudomonas fluorescens FW300-N1B4 0.42 Pf1N1B4_2864 Sugar/maltose fermentation stimulation protein homolog 0.58 Pf1N1B4_2529 4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262) — —
Pseudomonas simiae WCS417 0.42 PS417_23865 XRE family transcriptional regulator 0.59 PS417_25805 4-hydroxythreonine-4-phosphate dehydrogenase — —
Pseudomonas fluorescens GW456-L13 0.42 PfGW456L13_1530 Sugar/maltose fermentation stimulation protein homolog 0.58 PfGW456L13_1201 4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262) — —
Pseudomonas fluorescens FW300-N2E3 0.41 AO353_14430 XRE family transcriptional regulator 0.57 AO353_07310 4-hydroxythreonine-4-phosphate dehydrogenase — —
Magnetospirillum magneticum AMB-1 0.41 AMB_RS08095 DNA/RNA nuclease SfsA 0.33 AMB_RS18815 4-hydroxythreonine-4-phosphate dehydrogenase PdxA — —
Phaeobacter inhibens DSM 17395 0.37 PGA1_c29210 sugar fermentation stimulation protein A 0.30 PGA1_c19850 4-hydroxythreonine-4-phosphate dehydrogenase PdxA — —
Dinoroseobacter shibae DFL-12 0.36 Dshi_0118 sugar fermentation stimulation protein (RefSeq) 0.32 Dshi_1186 4-hydroxythreonine-4-phosphate dehydrogenase (RefSeq) — —
Azospirillum brasilense Sp245 0.36 AZOBR_RS04410 XRE family transcriptional regulator 0.31 AZOBR_RS16370 4-hydroxythreonine-4-phosphate dehydrogenase low > 97
Agrobacterium fabrum C58 0.36 Atu1605 sugar fermentation stimulation protein 0.32 Atu1104 pyridoxal phosphate biosynthesis protein — —
Azospirillum sp. SherDot2 0.35 MPMX19_00188 Sugar fermentation stimulation protein A 0.30 MPMX19_00835 D-erythronate 4-phosphate dehydrogenase low > 112
Sinorhizobium meliloti 1021 0.32 SMc00297 sugar fermentation stimulation protein A 0.33 SMc00580 4-hydroxythreonine-4-phosphate dehydrogenase low > 103

Not shown: 5 genomes with orthologs for DDA3937_RS15930 only; 24 genomes with orthologs for DDA3937_RS18260 only