| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
| Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_10215 | | histone deacetylase | 1.0 | CSW01_12835 | | phosphocarrier protein NPr | 0.48 | 8 |
| Alteromonas macleodii MIT1002 | 0.49 | MIT1002_02776 | | Acetoin utilization protein AcuC | 0.48 | MIT1002_00823 | | Phosphocarrier protein NPr | low | > 70 |
| Shewanella oneidensis MR-1 | 0.48 | SO1815 | | histone deacetylase/AcuC/AphA family protein (NCBI ptt file) | 0.55 | SO3965 | ptsO | phosphocarrier protein NPR (NCBI ptt file) | low | > 76 |
| Shewanella sp. ANA-3 | 0.47 | Shewana3_2634 | | histone deacetylase superfamily protein (RefSeq) | 0.55 | Shewana3_0668 | | HPr family phosphocarrier protein (RefSeq) | low | > 73 |
| Shewanella amazonensis SB2B | 0.47 | Sama_1245 | | histone deacetylase/AcuC/AphA family protein (RefSeq) | 0.55 | Sama_3092 | | phosphocarrier protein NPR (RefSeq) | low | > 62 |
| Shewanella loihica PV-4 | 0.47 | Shew_2487 | | histone deacetylase superfamily protein (RefSeq) | 0.49 | Shew_3315 | | phosphotransferase system, phosphocarrier protein HPr (RefSeq) | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.42 | Psyr_4295 | | Histone deacetylase superfamily | 0.34 | Psyr_4151 | | Phosphocarrier HPr protein | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.42 | Psyr_4295 | | Histone deacetylase superfamily | 0.34 | Psyr_4151 | | Phosphocarrier HPr protein | — | — |
| Pseudomonas segetis P6 | 0.41 | MPMX49_01102 | | hypothetical protein | 0.36 | MPMX49_03862 | | Phosphocarrier protein HPr | low | > 75 |
| Pseudomonas orientalis W4I3 | 0.40 | QF045_RS26755 | | histone deacetylase | 0.33 | QF045_RS07315 | | HPr family phosphocarrier protein | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.40 | PfGW456L13_1411 | | Deacetylases, including yeast histone deacetylase and acetoin utilization protein | 0.33 | PfGW456L13_5018 | | Phosphocarrier protein, nitrogen regulation associated | low | > 87 |
| Pseudomonas sp. DMC3 | 0.40 | GFF3926 | | hypothetical protein | 0.36 | GFF1824 | | Phosphocarrier protein NPr | low | > 89 |
| Pseudomonas lactucae CFBP13502 | 0.40 | GEMAOFIL_05044 | | hypothetical protein | 0.33 | GEMAOFIL_01071 | | Phosphocarrier protein NPr | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.40 | AO353_06255 | | histone deacetylase superfamily protein | 0.33 | AO353_05200 | | phosphocarrier protein HPr | — | — |
| Pseudomonas putida KT2440 | 0.39 | PP_4764 | | Histone deacetylase family protein | 0.34 | PP_0948 | | Phosphocarrier protein HPr | low | > 96 |
| Pseudomonas fluorescens SBW25-INTG | 0.39 | PFLU_RS26415 | | histone deacetylase | 0.33 | PFLU_RS04380 | | HPr family phosphocarrier protein | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.39 | Pf1N1B4_2738 | | Deacetylases, including yeast histone deacetylase and acetoin utilization protein | 0.33 | Pf1N1B4_1084 | | Phosphocarrier protein, nitrogen regulation associated | — | — |
| Pseudomonas fluorescens SBW25 | 0.39 | PFLU_RS26415 | | histone deacetylase | 0.33 | PFLU_RS04380 | | HPr family phosphocarrier protein | — | — |
| Pseudomonas sp. S08-1 | 0.39 | OH686_15985 | | deacetylase | 0.38 | OH686_08565 | | Phosphocarrier protein, nitrogen regulation associated | low | > 80 |
| Pseudomonas simiae WCS417 | 0.39 | PS417_24490 | | hypothetical protein | 0.33 | PS417_04325 | | phosphocarrier protein HPr | — | — |
| Pseudomonas sp. SVBP6 | 0.39 | COO64_RS15380 | | histone deacetylase | 0.33 | COO64_RS04265 | | HPr family phosphocarrier protein | low | > 93 |
| Pseudomonas sp. BP01 | 0.39 | JOY50_RS21835 | | histone deacetylase | 0.34 | JOY50_RS11110 | | HPr family phosphocarrier protein | low | > 84 |
| Pseudomonas stutzeri RCH2 | 0.39 | Psest_3501 | | Deacetylases, including yeast histone deacetylase and acetoin utilization protein | 0.35 | Psest_3317 | | Phosphotransferase System HPr (HPr) Family | low | > 67 |
| Pseudomonas sp. RS175 | 0.38 | PFR28_03823 | | hypothetical protein | 0.37 | PFR28_00169 | | Phosphocarrier protein NPr | low | > 88 |
| Pseudomonas fluorescens FW300-N2E2 | 0.38 | Pf6N2E2_5048 | | Deacetylases, including yeast histone deacetylase and acetoin utilization protein | 0.35 | Pf6N2E2_3271 | | Phosphocarrier protein, nitrogen regulation associated | low | > 103 |
| Pseudomonas fluorescens FW300-N2C3 | 0.37 | AO356_15540 | | histone deacetylase superfamily protein | 0.37 | AO356_07055 | | phosphocarrier protein HPr | low | > 104 |
| Herbaspirillum seropedicae SmR1 | 0.35 | HSERO_RS08155 | | deacetylase | 0.33 | HSERO_RS00445 | | phosphocarrier protein HPr | — | — |
| Sphingobium sp. HT1-2 | 0.34 | GFF3066 | | Deacetylases, including yeast histone deacetylase and acetoin utilization protein | 0.45 | GFF3818 | | Phosphocarrier protein, nitrogen regulation associated | low | > 95 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.33 | A4249_RS15620 | | histone deacetylase | 0.44 | A4249_RS12145 | | HPr family phosphocarrier protein | — | — |
| Ralstonia solanacearum PSI07 | 0.33 | RPSI07_RS15845 | | histone deacetylase | 0.40 | RPSI07_RS22440 | | HPr family phosphocarrier protein | — | — |
| Ralstonia sp. UNC404CL21Col | 0.32 | ABZR87_RS13440 | | histone deacetylase | 0.39 | ABZR87_RS06720 | | HPr family phosphocarrier protein | — | — |
| Ralstonia solanacearum GMI1000 | 0.32 | RS_RS08085 | | histone deacetylase | 0.39 | RS_RS01710 | | HPr family phosphocarrier protein | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.32 | RR42_RS07390 | | deacetylase | 0.38 | RR42_RS01790 | | phosphocarrier protein HPr | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.32 | Ga0059261_0328 | | Deacetylases, including yeast histone deacetylase and acetoin utilization protein | 0.47 | Ga0059261_0919 | | Phosphotransferase System HPr (HPr) Family | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.32 | RALBFv3_RS01640 | | histone deacetylase | 0.40 | RALBFv3_RS10870 | | HPr family phosphocarrier protein | — | — |
| Ralstonia solanacearum UW163 | 0.32 | UW163_RS14950 | | histone deacetylase | 0.40 | UW163_RS02710 | | HPr family phosphocarrier protein | — | — |
| Acidovorax sp. GW101-3H11 | 0.31 | Ac3H11_2603 | | Deacetylases, including yeast histone deacetylase and acetoin utilization protein | 0.36 | Ac3H11_2116 | | Phosphocarrier protein of PTS system | — | — |
| Variovorax sp. SCN45 | 0.30 | GFF2874 | | Deacetylases, including yeast histone deacetylase and acetoin utilization protein | 0.41 | GFF3652 | | Phosphotransferase system, phosphocarrier protein HPr | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.30 | GFF3830 | | Deacetylases, including yeast histone deacetylase and acetoin utilization protein | 0.36 | GFF2930 | | Phosphotransferase system, phosphocarrier protein HPr | — | — |
| Caulobacter crescentus NA1000 Δfur | 0.30 | CCNA_03763 | | deacetylase | 0.49 | CCNA_00241 | | phosphocarrier protein HPr | — | — |
| Caulobacter crescentus NA1000 | 0.30 | CCNA_03763 | | deacetylase | 0.49 | CCNA_00241 | | phosphocarrier protein HPr | — | — |
| Variovorax sp. OAS795 | 0.30 | ABID97_RS10570 | | histone deacetylase | 0.39 | ABID97_RS00570 | | HPr family phosphocarrier protein | low | > 91 |
| Dechlorosoma suillum PS | 0.26 | Dsui_2897 | | deacetylase, histone deacetylase/acetoin utilization protein | 0.41 | Dsui_0743 | | phosphotransferase system HPr (HPr) family protein | — | — |
| Bosea sp. OAE506 | 0.12 | ABIE41_RS10180 | | histone deacetylase family protein | 0.38 | ABIE41_RS02695 | | HPr family phosphocarrier protein | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.09 | ABZR86_RS11245 | | histone deacetylase family protein | 0.45 | ABZR86_RS19790 | | HPr family phosphocarrier protein | low | > 74 |
Not shown: 8 genomes with orthologs for CSW01_10215 only; 56 genomes with orthologs for CSW01_12835 only