Conservation of cofitness between CSW01_03750 and CSW01_11560 in Vibrio cholerae E7946 ATCC 55056

63 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_03750 U32 family peptidase 1.0 CSW01_11560 riboflavin biosynthesis protein RibD 0.57 20
Rahnella sp. WP5 0.77 EX31_RS20325 tRNA 5-hydroxyuridine modification protein YegQ 0.53 EX31_RS22125 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD — —
Serratia liquefaciens MT49 0.76 IAI46_19015 tRNA 5-hydroxyuridine modification protein YegQ 0.53 IAI46_04895 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD — —
Klebsiella pneumoniae MKP103 0.76 KDGMDA_26330 tRNA 5-hydroxyuridine modification protein YegQ 0.53 KDGMDA_14440 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD — —
Klebsiella michiganensis M5al 0.76 BWI76_RS19280 U32 family peptidase 0.52 BWI76_RS06350 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase — —
Escherichia coli ECOR27 0.75 NOLOHH_15500 yegQ tRNA 5-hydroxyuridine modification protein YegQ 0.53 NOLOHH_01400 ribD bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD — —
Escherichia coli ECRC100 0.75 OKFHMN_24165 yegQ tRNA 5-hydroxyuridine modification protein YegQ 0.51 OKFHMN_08455 ribD bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD — —
Escherichia coli ECRC101 0.75 MCAODC_20775 yegQ tRNA 5-hydroxyuridine modification protein YegQ 0.51 MCAODC_27680 ribD bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD — —
Escherichia coli ECRC98 0.75 JDDGAC_28275 yegQ tRNA 5-hydroxyuridine modification protein YegQ 0.51 JDDGAC_12110 ribD bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD — —
Escherichia coli BL21 0.75 ECD_01986 putative peptidase 0.53 ECD_00362 fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino) uracil reductase — —
Escherichia fergusonii Becca 0.75 EFB2_01770 23S rRNA 5-hydroxycytidine synthase 0.51 EFB2_03643 Riboflavin biosynthesis protein RibD — —
Escherichia coli BW25113 0.75 b2081 yegQ predicted peptidase (NCBI) 0.53 b0414 ribD fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino) uracil reductase (NCBI) — —
Escherichia coli ECRC102 0.75 NIAGMN_22110 yegQ tRNA 5-hydroxyuridine modification protein YegQ 0.51 NIAGMN_06510 ribD bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD — —
Escherichia coli ECOR38 0.75 HEPCGN_02845 yegQ tRNA 5-hydroxyuridine modification protein YegQ 0.52 HEPCGN_07080 ribD bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.75 OHPLBJKB_01623 putative protease YdcP 0.53 OHPLBJKB_03262 Riboflavin biosynthesis protein RibD — —
Escherichia coli ECRC62 0.75 BNILDI_14415 yegQ tRNA 5-hydroxyuridine modification protein YegQ 0.53 BNILDI_22815 ribD bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD — —
Escherichia coli Nissle 1917 0.75 ECOLIN_RS12250 tRNA 5-hydroxyuridine modification protein YegQ 0.51 ECOLIN_RS02505 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD — —
Escherichia coli ECRC99 0.75 KEDOAH_03985 yegQ tRNA 5-hydroxyuridine modification protein YegQ 0.51 KEDOAH_19510 ribD bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD — —
Pectobacterium carotovorum WPP14 0.75 HER17_RS06280 tRNA 5-hydroxyuridine modification protein YegQ 0.55 HER17_RS15960 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD — —
Enterobacter asburiae PDN3 0.74 EX28DRAFT_0478 Collagenase and related proteases 0.53 EX28DRAFT_2556 diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) — —
Enterobacter sp. TBS_079 0.74 MPMX20_03067 23S rRNA 5-hydroxycytidine synthase 0.51 MPMX20_01006 Riboflavin biosynthesis protein RibD — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.74 GFF3846 Putative protease 0.48 GFF4318 Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) — —
Pseudomonas stutzeri RCH2 0.73 Psest_4096 Collagenase and related proteases 0.47 Psest_3552 riboflavin biosynthesis protein RibD — —
Shewanella oneidensis MR-1 0.73 SO1252 peptidase, U32 family (NCBI ptt file) 0.50 SO3469 ribD riboflavin biosynthesis protein RibD (NCBI ptt file) — —
Dickeya dadantii 3937 0.73 DDA3937_RS15295 tRNA 5-hydroxyuridine modification protein YegQ 0.50 DDA3937_RS05505 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD — —
Pantoea agglomerans CFBP13505 P0401 0.73 PagCFBP13505_RS00955 U32 family peptidase 0.54 PagCFBP13505_RS10425 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD — —
Pantoea sp. MT58 0.73 IAI47_06845 tRNA 5-hydroxyuridine modification protein YegQ 0.53 IAI47_14770 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD — —
Shewanella sp. ANA-3 0.72 Shewana3_1068 peptidase U32 (RefSeq) 0.50 Shewana3_1096 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase (RefSeq) — —
Dickeya dianthicola 67-19 0.71 HGI48_RS15375 tRNA 5-hydroxyuridine modification protein YegQ 0.50 HGI48_RS05565 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD — —
Dickeya dianthicola ME23 0.71 DZA65_RS16195 tRNA 5-hydroxyuridine modification protein YegQ 0.50 DZA65_RS05890 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD — —
Shewanella amazonensis SB2B 0.71 Sama_1004 U32 family peptidase (RefSeq) 0.48 Sama_1016 diaminohydroxyphosphoribosylaminopyrimidine deaminase., 5-amino-6-(5-phosphoribosylamino)uracil reductase (RefSeq) — —
Shewanella loihica PV-4 0.71 Shew_2783 peptidase U32 (RefSeq) 0.52 Shew_1187 riboflavin biosynthesis protein RibD (RefSeq) — —
Alteromonas macleodii MIT1002 0.70 MIT1002_02342 putative protease YhbU precursor 0.44 MIT1002_02700 Riboflavin biosynthesis protein RibD — —
Erwinia tracheiphila HP pepo 2.2 0.70 IJEDHG_18770 yegQ tRNA 5-hydroxyuridine modification protein YegQ 0.51 IJEDHG_25995 ribD bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD — —
Erwinia tracheiphila SCR3 0.70 LU632_RS08665 yegQ tRNA 5-hydroxyuridine modification protein YegQ 0.51 LU632_RS18595 ribD bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD — —
Pseudomonas simiae WCS417 0.69 PS417_10300 protease 0.44 PS417_25265 diaminohydroxyphosphoribosylaminopyrimidine deaminase — —
Pseudomonas fluorescens FW300-N1B4 0.69 Pf1N1B4_3925 Putative protease 0.47 Pf1N1B4_2649 Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) — —
Pseudomonas fluorescens SBW25-INTG 0.69 PFLU_RS10460 tRNA 5-hydroxyuridine modification protein YegQ 0.47 PFLU_RS26900 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD — —
Pseudomonas fluorescens SBW25 0.69 PFLU_RS10460 tRNA 5-hydroxyuridine modification protein YegQ 0.47 PFLU_RS26900 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD — —
Pseudomonas segetis P6 0.69 MPMX49_00744 hypothetical protein 0.47 MPMX49_00990 Riboflavin biosynthesis protein RibD — —
Pseudomonas orientalis W4I3 0.69 QF045_RS12375 tRNA 5-hydroxyuridine modification protein YegQ 0.46 QF045_RS27230 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD — —
Pseudomonas aeruginosa PUPa3 0.69 DQ20_RS57935 yegQ;inference=COORDINATES tRNA 5-hydroxyuridine modification protein YegQ 0.47 DQ20_RS47900 ribD;go_function=5-amino-6-(5-phosphoribosylamino)uracil bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD — —
Pseudomonas fluorescens GW456-L13 0.68 PfGW456L13_2485 Putative protease 0.47 PfGW456L13_1313 Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) — —
Pseudomonas fluorescens FW300-N2E3 0.68 AO353_19800 protease 0.48 AO353_06715 diaminohydroxyphosphoribosylaminopyrimidine deaminase — —
Pseudomonas sp. DMC3 0.68 GFF1422 23S rRNA 5-hydroxycytidine synthase 0.47 GFF3827 Riboflavin biosynthesis protein RibD — —
Pseudomonas aeruginosa MRSN321 0.68 DY961_RS25485 yegQ;inference=COORDINATES tRNA 5-hydroxyuridine modification protein YegQ 0.47 DY961_RS27745 ribD;go_function=5-amino-6-(5-phosphoribosylamino)uracil bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD — —
Pseudomonas aeruginosa PA14 0.68 IKLFDK_26220 tRNA 5-hydroxyuridine modification protein YegQ 0.47 IKLFDK_20910 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD — —
Pseudomonas sp. RS175 0.68 PFR28_02843 hypothetical protein 0.48 PFR28_03949 Riboflavin biosynthesis protein RibD — —
Pseudomonas fluorescens FW300-N2E2 0.68 Pf6N2E2_45 Putative protease 0.48 Pf6N2E2_4919 Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) — —
Pseudomonas sp. S08-1 0.68 OH686_13055 Uncharacterized protease YegQ 0.46 OH686_15695 riboflavin biosynthesis protein RibD — —
Pseudomonas fluorescens FW300-N2C3 0.67 AO356_21300 protease 0.48 AO356_14930 diaminohydroxyphosphoribosylaminopyrimidine deaminase — —
Pseudomonas lactucae CFBP13502 0.67 GEMAOFIL_02169 23S rRNA 5-hydroxycytidine synthase 0.47 GEMAOFIL_05158 Riboflavin biosynthesis protein RibD — —
Pseudomonas sp. SVBP6 0.67 COO64_RS24350 yegQ tRNA 5-hydroxyuridine modification protein YegQ 0.47 COO64_RS15890 ribD bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD — —
Pseudomonas putida KT2440 0.65 PP_2206 putative peptidase 0.46 PP_0514 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase — —
Pseudomonas sp. BP01 0.65 JOY50_RS12690 yegQ tRNA 5-hydroxyuridine modification protein YegQ 0.46 JOY50_RS20125 ribD bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD — —
Acinetobacter radioresistens SK82 0.63 MPMX26_02040 23S rRNA 5-hydroxycytidine synthase 0.44 MPMX26_00152 Riboflavin biosynthesis protein RibD — —
Acinetobacter baumannii LAC-4 0.63 RR41_RS06110 tRNA 5-hydroxyuridine modification protein YegQ 0.42 RR41_RS17855 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD — —
Kangiella aquimarina DSM 16071 0.60 B158DRAFT_1722 Collagenase and related proteases 0.43 B158DRAFT_1910 diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) — —
Methylophilus sp. DMC18 0.56 GFF2319 hypothetical protein 0.44 GFF75 Riboflavin biosynthesis protein RibD — —
Marinobacter adhaerens HP15 0.55 HP15_2983 peptidase, U32 family 0.45 HP15_492 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase — —
Acidovorax sp. GW101-3H11 0.54 Ac3H11_3295 Probable protease (EC 3.4.24.3) 0.30 Ac3H11_1461 Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) — —
Dechlorosoma suillum PS 0.53 Dsui_0433 collagenase-like protease 0.37 Dsui_1267 riboflavin biosynthesis protein RibD — —
Fusobacterium nucleatum SB010 0.29 HUW76_02115 U32 family peptidase 0.32 HUW76_09285 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD low > 35
Desulfovibrio vulgaris Miyazaki F 0.20 DvMF_2645 peptidase U32 (RefSeq) 0.24 DvMF_3095 riboflavin biosynthesis protein RibD (RefSeq) — —

Not shown: 1 genomes with orthologs for CSW01_03750 only; 53 genomes with orthologs for CSW01_11560 only