Conservation of cofitness between CSW01_10815 and CSW01_09650 in Vibrio cholerae E7946 ATCC 55056

36 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_10815 Cys-tRNA(Pro) deacylase 1.0 CSW01_09650 C4-dicarboxylate ABC transporter 0.45 13
Pseudomonas stutzeri RCH2 0.55 Psest_1454 ybaK/ebsC protein 0.53 Psest_4268 tripartite ATP-independent periplasmic transporter solute receptor, DctP family low > 67
Pseudomonas sp. DMC3 0.53 GFF5105 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.55 GFF1146 C4-dicarboxylate-binding periplasmic protein DctP 0.55 34
Pseudomonas sp. BP01 0.53 JOY50_RS14880 ybaK Cys-tRNA(Pro) deacylase 0.20 JOY50_RS04225 TRAP transporter substrate-binding protein — —
Pseudomonas aeruginosa PA14 0.52 IKLFDK_18280 Cys-tRNA(Pro) deacylase 0.53 IKLFDK_27650 C4-dicarboxylate TRAP substrate-binding protein DctP low > 98
Desulfovibrio vulgaris Miyazaki F 0.52 DvMF_2065 ybaK/ebsC protein (RefSeq) 0.16 DvMF_1932 TRAP dicarboxylate transporter, DctP subunit (RefSeq) low > 51
Pseudomonas aeruginosa PUPa3 0.52 DQ20_RS42050 ybaK;go_function=aminoacyl-tRNA Cys-tRNA(Pro) deacylase 0.53 DQ20_RS50415 dctP;inference=COORDINATES C4-dicarboxylate TRAP substrate-binding protein DctP low > 101
Pseudomonas aeruginosa MRSN321 0.52 DY961_RS15090 ybaK;go_function=aminoacyl-tRNA Cys-tRNA(Pro) deacylase 0.53 DY961_RS11685 dctP;inference=COORDINATES C4-dicarboxylate TRAP substrate-binding protein DctP low > 100
Pseudomonas sp. S08-1 0.52 OH686_20370 Cys-tRNA(Pro) deacylase YbaK 0.40 OH686_16140 TRAP-type transporter, substrate-binding protein low > 80
Pseudomonas fluorescens FW300-N2E2 0.52 Pf6N2E2_5576 Cys-tRNA(Pro) deacylase YbaK 0.48 Pf6N2E2_3238 TRAP-type C4-dicarboxylate transport system, periplasmic component low > 103
Pseudomonas fluorescens FW300-N2C3 0.52 AO356_18260 hypothetical protein 0.48 AO356_06880 C4-dicarboxylate ABC transporter low > 104
Pseudomonas sp. RS175 0.51 PFR28_03366 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.53 PFR28_00119 C4-dicarboxylate-binding periplasmic protein DctP low > 88
Pseudomonas fluorescens SBW25 0.51 PFLU_RS05670 Cys-tRNA(Pro) deacylase 0.50 PFLU_RS16930 TRAP transporter substrate-binding protein low > 109
Pseudomonas fluorescens SBW25-INTG 0.51 PFLU_RS05670 Cys-tRNA(Pro) deacylase 0.50 PFLU_RS16930 TRAP transporter substrate-binding protein low > 109
Pseudomonas simiae WCS417 0.50 PS417_05585 hypothetical protein 0.49 PS417_14910 C4-dicarboxylate ABC transporter low > 88
Shewanella sp. ANA-3 0.50 Shewana3_0957 ybaK/ebsC protein (RefSeq) 0.49 Shewana3_1416 TRAP dicarboxylate transporter, DctP subunit (RefSeq) low > 73
Shewanella oneidensis MR-1 0.50 SO1124 conserved hypothetical protein TIGR00011 (NCBI ptt file) 0.48 SO3134 dctP C4-dicarboxylate-binding periplasmic protein (NCBI ptt file) low > 76
Shewanella amazonensis SB2B 0.49 Sama_0531 YbaK/EbsC protein (RefSeq) 0.48 Sama_2209 alpha-ketoglutarate TRAP transporter, solute receptor component (from data) 0.64 4
Pseudomonas segetis P6 0.45 ACVTMO_RS07095 ybaK Cys-tRNA(Pro) deacylase 0.54 ACVTMO_RS21730 dctP C4-dicarboxylate TRAP substrate-binding protein DctP low > 75
Shewanella loihica PV-4 0.42 Shew_0016 ybaK/ebsC protein (RefSeq) 0.47 Shew_1446 dicarboxylate TRAP transporter (succinate, fumarate, L-malate, and alpha-ketoglutarate), solute receptor component (from data) — —
Azospirillum brasilense Sp245 0.41 AZOBR_RS00470 hypothetical protein 0.34 AZOBR_RS09605 C4-dicarboxylate ABC transporter low > 97
Azospirillum sp. SherDot2 0.41 MPMX19_02507 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.35 MPMX19_00659 C4-dicarboxylate-binding periplasmic protein DctP low > 112
Caulobacter crescentus NA1000 Δfur 0.37 CCNA_01014 cysteinyl-tRNA(Pro) deacylase 0.18 CCNA_01513 C4-dicarboxylate-binding protein low > 67
Caulobacter crescentus NA1000 0.37 CCNA_01014 cysteinyl-tRNA(Pro) deacylase 0.18 CCNA_01513 C4-dicarboxylate-binding protein low > 66
Rhodospirillum rubrum S1H 0.35 Rru_A3668 hypothetical protein (NCBI) 0.35 Rru_A3678 TRAP dicarboxylate transporter- DctP subunit (NCBI) low > 58
Agrobacterium fabrum C58 0.32 Atu0275 hypothetical protein 0.20 Atu2744 C4-dicarboxylate binding protein — —
Magnetospirillum magneticum AMB-1 0.32 AMB_RS00065 Cys-tRNA(Pro) deacylase 0.35 AMB_RS04560 C4-dicarboxylate ABC transporter low > 64
Rhodopseudomonas palustris CGA009 0.29 TX73_022270 Cys-tRNA(Pro) deacylase 0.36 TX73_010550 TRAP transporter substrate-binding protein low > 86
Dechlorosoma suillum PS 0.27 Dsui_1216 ybaK/ebsC protein 0.34 Dsui_3155 tripartite ATP-independent periplasmic transporter solute receptor, DctP family low > 51
Variovorax sp. OAS795 0.26 ABID97_RS21705 aminoacyl-tRNA deacylase 0.18 ABID97_RS26055 TRAP transporter substrate-binding protein — —
Burkholderia phytofirmans PsJN 0.25 BPHYT_RS15940 membrane protein 0.23 BPHYT_RS24175 C4-dicarboxylate ABC transporter low > 109
Paraburkholderia bryophila 376MFSha3.1 0.25 H281DRAFT_04124 Cys-tRNA(Pro) deacylase 0.22 H281DRAFT_05324 tripartite ATP-independent transporter solute receptor, DctP family low > 103
Cupriavidus basilensis FW507-4G11 0.24 RR42_RS03340 membrane protein 0.16 RR42_RS06535 C4-dicarboxylate ABC transporter low > 128
Ralstonia sp. UNC404CL21Col 0.24 ABZR87_RS00800 Cys-tRNA(Pro) deacylase 0.20 ABZR87_RS21090 TRAP transporter substrate-binding protein low > 80
Variovorax sp. SCN45 0.24 GFF3103 Cys-tRNA(Pro) deacylase YbaK 0.21 GFF1519 TRAP-type C4-dicarboxylate transport system, periplasmic component low > 127
Herbaspirillum seropedicae SmR1 0.23 HSERO_RS04270 membrane protein 0.36 HSERO_RS04240 C4-dicarboxylate ABC transporter low > 78
Castellaniella sp019104865 MT123 0.23 ABCV34_RS00510 aminoacyl-tRNA deacylase 0.49 ABCV34_RS05050 TRAP transporter substrate-binding protein low > 48

Not shown: 61 genomes with orthologs for CSW01_10815 only; 3 genomes with orthologs for CSW01_09650 only