| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_00175 | | serine/threonine protein kinase | 1.0 | CSW01_08445 | | ABC transporter substrate-binding protein | 0.64 | 7 |
| Pantoea sp. MT58 | 0.63 | IAI47_00420 | | serine/threonine protein kinase | 0.40 | IAI47_09380 | | peptide ABC transporter substrate-binding protein SapA | low | > 76 |
| Rahnella sp. WP5 | 0.62 | EX31_RS15915 | | serine/threonine protein kinase | 0.41 | EX31_RS15700 | | peptide ABC transporter substrate-binding protein SapA | — | — |
| Serratia liquefaciens MT49 | 0.62 | IAI46_25000 | | serine/threonine protein kinase | 0.40 | IAI46_13525 | | peptide ABC transporter substrate-binding protein SapA | — | — |
| Pectobacterium carotovorum WPP14 | 0.60 | HER17_RS21480 | | serine/threonine protein kinase | 0.40 | HER17_RS09495 | | peptide ABC transporter substrate-binding protein SapA | low | > 75 |
| Dickeya dadantii 3937 | 0.60 | DDA3937_RS00095 | | serine/threonine protein kinase | 0.39 | DDA3937_RS12440 | | peptide ABC transporter substrate-binding protein SapA | low | > 74 |
| Dickeya dianthicola ME23 | 0.59 | DZA65_RS22245 | | serine/threonine protein kinase | 0.39 | DZA65_RS12955 | | peptide ABC transporter substrate-binding protein SapA | low | > 75 |
| Alteromonas macleodii MIT1002 | 0.59 | MIT1002_00718 | | serine/threonine protein kinase | 0.35 | MIT1002_01141 | | Dipeptide-binding protein | low | > 70 |
| Escherichia coli ECRC102 | 0.59 | NIAGMN_11930 | srkA | stress response kinase SrkA | 0.39 | NIAGMN_26630 | sapA | peptide ABC transporter substrate-binding protein SapA | — | — |
| Escherichia coli ECOR27 | 0.59 | NOLOHH_06305 | srkA | stress response kinase SrkA | 0.39 | NOLOHH_20145 | sapA | peptide ABC transporter substrate-binding protein SapA | — | — |
| Dickeya dianthicola 67-19 | 0.59 | HGI48_RS21270 | | serine/threonine protein kinase | 0.39 | HGI48_RS12505 | | peptide ABC transporter substrate-binding protein SapA | low | > 71 |
| Escherichia coli ECRC101 | 0.59 | MCAODC_04675 | srkA | stress response kinase SrkA | 0.39 | MCAODC_15810 | sapA | peptide ABC transporter substrate-binding protein SapA | — | — |
| Escherichia coli ECRC99 | 0.59 | KEDOAH_13975 | srkA | stress response kinase SrkA | 0.39 | KEDOAH_26315 | sapA | peptide ABC transporter substrate-binding protein SapA | — | — |
| Escherichia coli ECRC62 | 0.59 | BNILDI_05225 | srkA | stress response kinase SrkA | 0.39 | BNILDI_18295 | sapA | peptide ABC transporter substrate-binding protein SapA | low | > 75 |
| Escherichia coli ECRC98 | 0.59 | JDDGAC_17800 | srkA | stress response kinase SrkA | 0.39 | JDDGAC_05005 | sapA | peptide ABC transporter substrate-binding protein SapA | — | — |
| Escherichia coli ECRC100 | 0.59 | OKFHMN_14175 | srkA | stress response kinase SrkA | 0.39 | OKFHMN_02460 | sapA | peptide ABC transporter substrate-binding protein SapA | — | — |
| Escherichia coli BL21 | 0.59 | ECD_03745 | | Cpx stress response Thr/Ser protein kinase; MazF antagonist protein | 0.39 | ECD_01271 | | antimicrobial peptide transport ABC transporter periplasmic binding protein | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.59 | OHPLBJKB_04194 | | Stress response kinase A | 0.39 | OHPLBJKB_02388 | | Peptide transport periplasmic protein SapA | low | > 73 |
| Escherichia coli Nissle 1917 | 0.59 | ECOLIN_RS22245 | | stress response kinase SrkA | 0.39 | ECOLIN_RS07825 | | ABC transporter substrate-binding protein SapA | — | — |
| Escherichia coli BW25113 | 0.59 | b3859 | yihE | predicted kinase (NCBI) | 0.39 | b1294 | sapA | predicted antimicrobial peptide transporter subunit (NCBI) | low | > 76 |
| Escherichia fergusonii Becca | 0.59 | EFB2_04758 | | Stress response kinase A | 0.39 | EFB2_02626 | | Peptide transport periplasmic protein SapA | low | > 86 |
| Escherichia coli ECOR38 | 0.58 | HEPCGN_12810 | srkA | stress response kinase SrkA | 0.39 | HEPCGN_25740 | sapA | peptide ABC transporter substrate-binding protein SapA | — | — |
| Klebsiella michiganensis M5al | 0.58 | BWI76_RS00340 | | stress response kinase A | 0.40 | BWI76_RS12420 | | peptide ABC transporter substrate-binding protein SapA | low | > 92 |
| Erwinia amylovora T8 | 0.57 | OLJFJH_05460 | | serine/threonine protein kinase | 0.39 | OLJFJH_13660 | | peptide ABC transporter substrate-binding protein SapA | low | > 58 |
| Enterobacter asburiae PDN3 | 0.57 | EX28DRAFT_4340 | | Putative homoserine kinase type II (protein kinase fold) | 0.41 | EX28DRAFT_0974 | | ABC-type oligopeptide transport system, periplasmic component | low | > 76 |
| Shewanella loihica PV-4 | 0.57 | Shew_0264 | | serine/threonine protein kinase (RefSeq) | 0.37 | Shew_2498 | | extracellular solute-binding protein (RefSeq) | low | > 60 |
| Enterobacter sp. TBS_079 | 0.57 | MPMX20_04604 | | Stress response kinase A | 0.40 | MPMX20_02474 | | Peptide transport periplasmic protein SapA | low | > 85 |
| Shewanella oneidensis MR-1 | 0.57 | SO0332 | | hypothetical kinase (NCBI ptt file) | 0.36 | SO1805 | sapA | peptide ABC transporter, periplasmic peptide-binding protein (NCBI ptt file) | low | > 76 |
| Shewanella sp. ANA-3 | 0.57 | Shewana3_3839 | | serine/threonine protein kinase (RefSeq) | 0.37 | Shewana3_2650 | | acetate kinase (RefSeq) | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.56 | GFF2212 | | YihE protein, a ser/thr kinase implicated in LPS synthesis and Cpx signalling | 0.38 | GFF2688 | | Peptide transport periplasmic protein SapA | low | > 78 |
| Erwinia tracheiphila SCR3 | 0.54 | LU632_RS23880 | | serine/threonine protein kinase | 0.38 | LU632_RS11570 | sapA | peptide ABC transporter substrate-binding protein SapA | low | > 74 |
| Shewanella amazonensis SB2B | 0.53 | Sama_3322 | | serine/threonine protein kinase (RefSeq) | 0.36 | Sama_1235 | | peptide ABC transporter, periplasmic peptide-binding protein (RefSeq) | low | > 62 |
| Paraburkholderia sabiae LMG 24235 | 0.49 | QEN71_RS00430 | | serine/threonine protein kinase | 0.31 | QEN71_RS28705 | | ABC transporter substrate-binding protein | 0.39 | 20 |
| Pseudomonas fluorescens FW300-N2E2 | 0.48 | Pf6N2E2_4755 | | YihE protein, required for LPS synthesis | 0.31 | Pf6N2E2_3310 | | Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2) | low | > 103 |
| Pseudomonas fluorescens FW300-N2C3 | 0.48 | AO356_14115 | | serine/threonine protein kinase | 0.31 | AO356_07255 | | peptide ABC transporter substrate-binding protein | low | > 104 |
| Herbaspirillum seropedicae SmR1 | 0.48 | HSERO_RS07220 | | serine/threonine protein kinase | 0.13 | HSERO_RS09195 | | glutathione ABC transporter substrate-binding protein GsiB | low | > 78 |
| Pseudomonas sp. DMC3 | 0.48 | GFF80 | | Stress response kinase A | 0.32 | GFF5023 | | Periplasmic dipeptide transport protein | low | > 89 |
| Pseudomonas fluorescens FW300-N2E3 | 0.48 | AO353_07545 | | serine/threonine protein kinase | 0.30 | AO353_05370 | | peptide ABC transporter substrate-binding protein | 0.30 | 53 |
| Pseudomonas fluorescens GW456-L13 | 0.48 | PfGW456L13_1143 | | YihE protein, required for LPS synthesis | 0.31 | PfGW456L13_5054 | | Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2) | low | > 87 |
| Pseudomonas sp. RS175 | 0.48 | PFR28_04107 | | Serine/threonine protein kinase RdoA | 0.32 | PFR28_00128 | | Periplasmic dipeptide transport protein | low | > 88 |
| Pseudomonas fluorescens FW300-N1B4 | 0.48 | Pf1N1B4_2481 | | YihE protein, required for LPS synthesis | 0.32 | Pf1N1B4_1121 | | Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2) | low | > 87 |
| Pseudomonas sp. SVBP6 | 0.47 | COO64_RS22745 | | serine/threonine protein kinase | 0.31 | COO64_RS04105 | | ABC transporter substrate-binding protein | low | > 93 |
| Pseudomonas simiae WCS417 | 0.47 | PS417_26025 | | serine/threonine protein kinase | 0.30 | PS417_04075 | | peptide ABC transporter substrate-binding protein | low | > 88 |
| Pseudomonas fluorescens SBW25-INTG | 0.47 | PFLU_RS27670 | | serine/threonine protein kinase | 0.30 | PFLU_RS04120 | | ABC transporter substrate-binding protein | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.47 | PFLU_RS27670 | | serine/threonine protein kinase | 0.30 | PFLU_RS04120 | | ABC transporter substrate-binding protein | low | > 109 |
| Variovorax sp. SCN45 | 0.47 | GFF3567 | | YihE protein, required for LPS synthesis | 0.30 | GFF7288 | | Dipeptide ABC transporter, substrate-binding protein DppA (TC 3.A.1.5.2) | low | > 127 |
| Kangiella aquimarina DSM 16071 | 0.47 | B158DRAFT_1377 | | Putative homoserine kinase type II (protein kinase fold) | 0.32 | B158DRAFT_1047 | | ABC-type dipeptide transport system, periplasmic component | low | > 40 |
| Pseudomonas sp. S08-1 | 0.47 | OH686_10380 | | YihE protein, required for LPS synthesis | 0.31 | OH686_08695 | | Dipeptide ABC transporter, substrate-binding protein DppA | low | > 80 |
| Pseudomonas aeruginosa PA14 | 0.47 | IKLFDK_22995 | | serine/threonine protein kinase | 0.31 | IKLFDK_01580 | | Di/tripeptide-binding protein 3 | low | > 101 |
| Burkholderia phytofirmans PsJN | 0.46 | BPHYT_RS01730 | | serine/threonine protein kinase | 0.31 | BPHYT_RS18690 | | ABC transporter | 0.17 | 104 |
| Pseudomonas sp. BP01 | 0.46 | JOY50_RS17915 | | serine/threonine protein kinase | 0.30 | JOY50_RS10980 | | ABC transporter substrate-binding protein | low | > 84 |
| Paraburkholderia graminis OAS925 | 0.46 | ABIE53_000438 | | Ser/Thr protein kinase RdoA (MazF antagonist) | 0.30 | ABIE53_000595 | | dipeptide transport system substrate-binding protein | low | > 113 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.46 | H281DRAFT_02190 | | Ser/Thr protein kinase RdoA involved in Cpx stress response, MazF antagonist | 0.31 | H281DRAFT_05802 | | dipeptide transport system substrate-binding protein | low | > 103 |
| Pseudomonas putida KT2440 | 0.46 | PP_0359 | | serine/threonine protein kinase | 0.30 | PP_0885 | | dipeptide ABC transporter - periplasmic binding protein | low | > 96 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.45 | Psyr_4697 | | Aminoglycoside phosphotransferase | 0.32 | Psyr_4238 | | extracellular solute-binding protein, family 5 | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.45 | Psyr_4697 | | Aminoglycoside phosphotransferase | 0.32 | Psyr_4238 | | extracellular solute-binding protein, family 5 | low | > 86 |
| Variovorax sp. OAS795 | 0.44 | ABID97_RS00940 | | serine/threonine protein kinase | 0.30 | ABID97_RS04470 | | ABC transporter substrate-binding protein | low | > 91 |
Not shown: 16 genomes with orthologs for CSW01_00175 only; 13 genomes with orthologs for CSW01_08445 only