| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_07965 | | LysR family transcriptional regulator | 1.0 | CSW01_07875 | | cytochrome BD ubiquinol oxidase subunit II | 0.57 | 19 |
| Erwinia amylovora T8 | 0.38 | OLJFJH_05375 | | transcriptional regulator | 0.31 | OLJFJH_17325 | | cytochrome d ubiquinol oxidase subunit II | low | > 58 |
| Rahnella sp. WP5 | 0.36 | EX31_RS04240 | | LysR family transcriptional regulator | 0.33 | EX31_RS02075 | | cytochrome d ubiquinol oxidase subunit II | low | > 89 |
| Dickeya dadantii 3937 | 0.36 | DDA3937_RS03225 | | LysR family transcriptional regulator | 0.30 | DDA3937_RS08550 | | cytochrome d ubiquinol oxidase subunit II | low | > 74 |
| Klebsiella michiganensis M5al | 0.35 | BWI76_RS16740 | | transcriptional regulator | 0.32 | BWI76_RS14255 | | terminal oxidase subunit II | low | > 92 |
| Pantoea agglomerans CFBP13505 P0401 | 0.35 | PagCFBP13505_RS12040 | | LysR family transcriptional regulator | 0.30 | PagCFBP13505_RS16230 | | cytochrome d ubiquinol oxidase subunit II | low | > 74 |
| Enterobacter asburiae PDN3 | 0.34 | EX28DRAFT_2404 | | Transcriptional regulator | 0.31 | EX28DRAFT_1022 | | cytochrome d oxidase, subunit II (cydB) | low | > 76 |
| Pantoea sp. MT58 | 0.34 | IAI47_21735 | | LysR family transcriptional regulator | 0.31 | IAI47_03475 | | cytochrome d ubiquinol oxidase subunit II | low | > 76 |
| Enterobacter sp. TBS_079 | 0.34 | MPMX20_01221 | | HTH-type transcriptional regulator BenM | 0.33 | MPMX20_02428 | | Cytochrome bd-II ubiquinol oxidase subunit 2 | low | > 85 |
| Klebsiella pneumoniae MKP103 | 0.34 | KDGMDA_23755 | | transcriptional regulator | 0.31 | KDGMDA_18975 | | cytochrome d ubiquinol oxidase subunit II | low | > 95 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.32 | GFF3076 | | LysR family transcriptional regulator STM3121 | 0.28 | GFF4255 | | putative Cytochrome bd2, subunit II | low | > 78 |
| Paraburkholderia sabiae LMG 24235 | 0.30 | QEN71_RS38685 | | LysR family transcriptional regulator | 0.28 | QEN71_RS37520 | | cytochrome d ubiquinol oxidase subunit II | low | > 153 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.30 | Xcc-8004.386.1 | | LysR family transcriptional regulator STM3121 | 0.29 | Xcc-8004.1652.1 | | putative Cytochrome bd2, subunit II | low | > 74 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.29 | H281DRAFT_01885 | | DNA-binding transcriptional regulator, LysR family | 0.30 | H281DRAFT_06442 | | cytochrome d ubiquinol oxidase subunit II | low | > 103 |
| Paraburkholderia graminis OAS925 | 0.29 | ABIE53_004883 | | DNA-binding transcriptional LysR family regulator | 0.29 | ABIE53_005269 | | cytochrome d ubiquinol oxidase subunit II | low | > 113 |
| Burkholderia phytofirmans PsJN | 0.29 | BPHYT_RS10210 | | LysR family transcriptional regulator | 0.28 | BPHYT_RS28410 | | ubiquinol oxidase subunit II, cyanide insensitive | — | — |
| Pseudomonas sp. BP01 | 0.28 | JOY50_RS09345 | | LysR family transcriptional regulator | 0.32 | JOY50_RS02200 | cydB | cytochrome d ubiquinol oxidase subunit II | low | > 84 |
| Pseudomonas aeruginosa MRSN321 | 0.28 | DY961_RS10965 | | LysR family transcriptional regulator | 0.31 | DY961_RS13215 | cioB;inference=COORDINATES | cyanide-insensitive cytochrome bd quinol oxidase subunit II | low | > 100 |
| Pseudomonas aeruginosa PUPa3 | 0.28 | DQ20_RS51110 | | LysR family transcriptional regulator | 0.31 | DQ20_RS48535 | cioB;inference=COORDINATES | cyanide-insensitive cytochrome bd quinol oxidase subunit II | low | > 101 |
| Pseudomonas aeruginosa PA14 | 0.28 | IKLFDK_28390 | | LysR family transcriptional regulator | 0.31 | IKLFDK_20270 | | cyanide-insensitive cytochrome bd quinol oxidase subunit II | low | > 98 |
| Cupriavidus basilensis FW507-4G11 | 0.28 | RR42_RS12375 | | LysR family transcriptional regulator | 0.52 | RR42_RS25830 | | cytochrome BD ubiquinol oxidase subunit II | low | > 128 |
| Pseudomonas stutzeri RCH2 | 0.28 | Psest_3707 | | Transcriptional regulator | 0.31 | Psest_2558 | | cytochrome d oxidase, subunit II (cydB) | low | > 67 |
| Pseudomonas syringae pv. syringae B728a | 0.27 | Psyr_0421 | | transcriptional regulator, LysR family | 0.31 | Psyr_4281 | | cytochrome bd quinol oxidase subunit 2 apoprotein | low | > 86 |
| Pseudomonas putida KT2440 | 0.27 | PP_5071 | | putative DNA-binding transcriptional regulator | 0.33 | PP_4650 | | Ubiquinol oxidase subunit II, cyanide insensitive | low | > 96 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.27 | Psyr_0421 | | transcriptional regulator, LysR family | 0.31 | Psyr_4281 | | cytochrome bd quinol oxidase subunit 2 apoprotein | low | > 86 |
| Pseudomonas sp. SVBP6 | 0.27 | COO64_RS13110 | | LysR family transcriptional regulator | 0.32 | COO64_RS02890 | cydB | cytochrome d ubiquinol oxidase subunit II | low | > 93 |
| Pseudomonas orientalis W4I3 | 0.27 | QF045_RS05080 | | LysR substrate-binding domain-containing protein | 0.32 | QF045_RS26640 | | cytochrome d ubiquinol oxidase subunit II | low | > 93 |
| Pseudomonas simiae WCS417 | 0.27 | PS417_02020 | | LysR family transcriptional regulator | 0.32 | PS417_24345 | | ubiquinol oxidase subunit II | low | > 88 |
| Pseudomonas sp. RS175 | 0.27 | PFR28_05019 | | HTH-type transcriptional regulator BenM | 0.33 | PFR28_03800 | | Cytochrome bd-II ubiquinol oxidase subunit 2 | low | > 88 |
| Pseudomonas fluorescens FW300-N2E2 | 0.26 | Pf6N2E2_3735 | | LysR family transcriptional regulator YnfL | 0.32 | Pf6N2E2_5069 | | putative Cytochrome bd2, subunit II | low | > 103 |
| Pseudomonas fluorescens FW300-N2C3 | 0.26 | AO356_09290 | | LysR family transcriptional regulator | 0.32 | AO356_15645 | | ubiquinol oxidase subunit II | low | > 104 |
| Pseudomonas fluorescens SBW25-INTG | 0.26 | PFLU_RS02065 | | LysR family transcriptional regulator | 0.32 | PFLU_RS26265 | | cytochrome d ubiquinol oxidase subunit II | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.26 | PFLU_RS02065 | | LysR family transcriptional regulator | 0.32 | PFLU_RS26265 | | cytochrome d ubiquinol oxidase subunit II | low | > 109 |
| Pseudomonas lactucae CFBP13502 | 0.26 | GEMAOFIL_00636 | | HTH-type transcriptional regulator BenM | 0.32 | GEMAOFIL_05022 | | Cytochrome bd-I ubiquinol oxidase subunit 2 | low | > 96 |
| Serratia liquefaciens MT49 | 0.26 | IAI46_11680 | | LysR family transcriptional regulator | 0.30 | IAI46_15415 | | cytochrome d ubiquinol oxidase subunit II | low | > 87 |
| Pseudomonas fluorescens GW456-L13 | 0.26 | PfGW456L13_255 | | LysR family transcriptional regulator YnfL | 0.31 | PfGW456L13_1436 | | putative Cytochrome bd2, subunit II | low | > 87 |
| Pseudomonas fluorescens FW300-N1B4 | 0.25 | Pf1N1B4_1530 | | LysR family transcriptional regulator YnfL | 0.32 | Pf1N1B4_2761 | | putative Cytochrome bd2, subunit II | low | > 87 |
| Pseudomonas sp. DMC3 | 0.25 | GFF3108 | | HTH-type transcriptional regulator BenM | 0.31 | GFF3946 | | Cytochrome bd-I ubiquinol oxidase subunit 2 | low | > 89 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.25 | GFF103 | | LysR family transcriptional regulator YnfL | 0.45 | GFF216 | | Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) | low | > 90 |
| Ralstonia solanacearum UW163 | 0.25 | UW163_RS21220 | | LysR family transcriptional regulator | 0.49 | UW163_RS21305 | | cytochrome bd ubiquinol oxidase subunit II | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.25 | RALBFv3_RS17920 | | LysR family transcriptional regulator | 0.49 | RALBFv3_RS17835 | | cytochrome bd ubiquinol oxidase subunit II | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.25 | AO353_12600 | | LysR family transcriptional regulator | 0.32 | AO353_13945 | | ubiquinol oxidase subunit II | low | > 101 |
| Ralstonia solanacearum PSI07 | 0.25 | RPSI07_RS05680 | | LysR family transcriptional regulator | 0.49 | RPSI07_RS05725 | | cytochrome d ubiquinol oxidase subunit II | low | > 81 |
| Ralstonia solanacearum GMI1000 | 0.24 | RS_RS23100 | | LysR family transcriptional regulator | 0.50 | RS_RS23140 | | cytochrome d ubiquinol oxidase subunit II | low | > 80 |
| Acinetobacter baumannii LAC-4 | 0.24 | RR41_RS11480 | | LysR family transcriptional regulator | 0.30 | RR41_RS05045 | | cytochrome d ubiquinol oxidase subunit II | low | > 55 |
| Ralstonia sp. UNC404CL21Col | 0.23 | ABZR87_RS12870 | | LysR family transcriptional regulator | 0.49 | ABZR87_RS18835 | | cytochrome d ubiquinol oxidase subunit II | low | > 80 |
| Sphingobium sp. HT1-2 | 0.23 | GFF3022 | | Transcriptional regulator, LysR family | 0.30 | GFF5359 | | Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) | low | > 95 |
| Acinetobacter radioresistens SK82 | 0.21 | MPMX26_01690 | | HTH-type transcriptional regulator BenM | 0.29 | MPMX26_01455 | | Cytochrome bd-I ubiquinol oxidase subunit 2 | — | — |
| Variovorax sp. OAS795 | 0.20 | ABID97_RS17495 | | LysR family transcriptional regulator | 0.33 | ABID97_RS28655 | | cytochrome d ubiquinol oxidase subunit II | — | — |
| Rhodopseudomonas palustris CGA009 | 0.20 | TX73_002855 | | LysR family transcriptional regulator | 0.30 | TX73_024915 | | cytochrome d ubiquinol oxidase subunit II | 0.28 | 76 |
| Azospirillum sp. SherDot2 | 0.19 | MPMX19_03900 | | Hca operon transcriptional activator HcaR | 0.31 | MPMX19_05025 | | Cytochrome bd-I ubiquinol oxidase subunit 2 | low | > 112 |
| Pseudomonas segetis P6 | 0.19 | ACVTMO_RS04005 | | LysR family transcriptional regulator | 0.32 | ACVTMO_RS19785 | cydB | cytochrome d ubiquinol oxidase subunit II | low | > 75 |
Not shown: 37 genomes with orthologs for CSW01_07965 only; 18 genomes with orthologs for CSW01_07875 only