| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_07065 | | multidrug resistance protein | 1.0 | CSW01_07480 | | ribosomal RNA large subunit methyltransferase K/L | 0.64 | 2 |
| Enterobacter asburiae PDN3 | 0.36 | EX28DRAFT_2613 | | efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family | 0.55 | EX28DRAFT_1995 | | Predicted N6-adenine-specific DNA methylase | low | > 76 |
| Lysobacter sp. OAE881 | 0.28 | ABIE51_RS07715 | | efflux transporter outer membrane subunit | 0.37 | ABIE51_RS14475 | | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | low | > 62 |
| Pseudomonas segetis P6 | 0.28 | MPMX49_02241 | | Toluene efflux pump outer membrane protein TtgF | 0.41 | MPMX49_03025 | | Ribosomal RNA large subunit methyltransferase K/L | low | > 75 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.28 | Xcc-8004.3526.1 | | Outer membrane component of tripartite multidrug resistance system | 0.38 | Xcc-8004.3335.1 | | 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) | low | > 74 |
| Pseudomonas fluorescens FW300-N2E2 | 0.25 | Pf6N2E2_147 | | Outer membrane component of tripartite multidrug resistance system | 0.40 | Pf6N2E2_2346 | | 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) | low | > 103 |
| Pseudomonas fluorescens FW300-N2C3 | 0.25 | AO356_01035 | | multidrug RND transporter | 0.39 | AO356_02605 | | 50S rRNA methyltransferase | low | > 104 |
| Pseudomonas simiae WCS417 | 0.25 | PS417_16920 | | multidrug RND transporter | 0.41 | PS417_20930 | | 50S rRNA methyltransferase | low | > 88 |
| Dyella japonica UNC79MFTsu3.2 | 0.25 | ABZR86_RS14775 | | efflux transporter outer membrane subunit | 0.41 | ABZR86_RS21235 | | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | low | > 74 |
| Pseudomonas sp. RS175 | 0.25 | PFR28_02749 | | Toluene efflux pump outer membrane protein TtgF | 0.41 | PFR28_01055 | | Ribosomal RNA large subunit methyltransferase K/L | low | > 88 |
| Pseudomonas fluorescens SBW25 | 0.25 | PFLU_RS18905 | | efflux transporter outer membrane subunit | 0.41 | PFLU_RS22545 | | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.25 | PFLU_RS18905 | | efflux transporter outer membrane subunit | 0.41 | PFLU_RS22545 | | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | low | > 109 |
| Pseudomonas lactucae CFBP13502 | 0.25 | GEMAOFIL_03699 | | Toluene efflux pump outer membrane protein TtgF | 0.42 | GEMAOFIL_04331 | | Ribosomal RNA large subunit methyltransferase K/L | low | > 93 |
| Pseudomonas fluorescens FW300-N2E3 | 0.25 | AO353_27850 | | multidrug RND transporter | 0.41 | AO353_00775 | | 50S rRNA methyltransferase | low | > 101 |
| Pseudomonas fluorescens FW300-N1B4 | 0.25 | Pf1N1B4_4000 | | Outer membrane component of tripartite multidrug resistance system | 0.41 | Pf1N1B4_3844 | | 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) | low | > 87 |
| Pseudomonas sp. SVBP6 | 0.25 | COO64_RS08910 | | efflux transporter outer membrane subunit | 0.42 | COO64_RS05295 | rlmKL | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | low | > 93 |
| Pseudomonas fluorescens GW456-L13 | 0.24 | PfGW456L13_2604 | | Outer membrane component of tripartite multidrug resistance system | 0.41 | PfGW456L13_4094 | | 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) | low | > 87 |
| Pseudomonas aeruginosa PA14 | 0.24 | IKLFDK_20075 | | RND transporter | 0.42 | IKLFDK_15510 | | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | low | > 100 |
| Pseudomonas sp. DMC3 | 0.24 | GFF1486 | | Toluene efflux pump outer membrane protein TtgI | 0.42 | GFF5254 | | Ribosomal RNA large subunit methyltransferase K/L | low | > 89 |
| Rhodanobacter denitrificans FW104-10B01 | 0.23 | LRK54_RS07780 | | efflux transporter outer membrane subunit | 0.40 | LRK54_RS14600 | | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | low | > 59 |
| Rhodanobacter denitrificans MT42 | 0.23 | LRK55_RS07510 | | efflux transporter outer membrane subunit | 0.40 | LRK55_RS14315 | | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | low | > 63 |
| Rhodanobacter sp. FW510-T8 | 0.23 | OKGIIK_14280 | | Multidrug RND transporter | 0.39 | OKGIIK_03440 | rlmKL | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | low | > 52 |
| Rhodanobacter sp000427505 FW510-R12 | 0.22 | LRK53_RS00735 | | efflux transporter outer membrane subunit | 0.41 | LRK53_RS14000 | | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | low | > 59 |
| Pseudomonas putida KT2440 | 0.21 | PP_1263 | | putative Fusaric acid resistance protein | 0.42 | PP_2096 | | fused 23S rRNA m2G2445 methyltransferase and 23S rRNA m7G2069 methyltransferase | low | > 96 |
| Pseudomonas sp. BP01 | 0.20 | JOY50_RS15460 | | efflux transporter outer membrane subunit | 0.42 | JOY50_RS22095 | rlmKL | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | low | > 84 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.20 | Psyr_1045 | | RND efflux system, outer membrane lipoprotein, NodT | 0.42 | Psyr_2108 | | 23S rRNA m(2)G-2445 methyltransferase | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.20 | Psyr_1045 | | RND efflux system, outer membrane lipoprotein, NodT | 0.42 | Psyr_2108 | | 23S rRNA m(2)G-2445 methyltransferase | low | > 86 |
| Rahnella sp. WP5 | 0.18 | EX31_RS13650 | | efflux transporter outer membrane subunit | 0.55 | EX31_RS18080 | | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | low | > 89 |
| Serratia liquefaciens MT49 | 0.18 | IAI46_19995 | | efflux transporter outer membrane subunit | 0.56 | IAI46_08820 | | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | low | > 86 |
| Klebsiella michiganensis M5al | 0.18 | BWI76_RS23620 | | multidrug resistance transporter | 0.55 | BWI76_RS09925 | | 23S rRNA (guanine(2445)-N(2))/(guanine(2069)-N(7))- methyltransferase | low | > 92 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.17 | GFF3807 | | RND efflux system, outer membrane lipoprotein, NodT family | 0.56 | GFF3239 | | 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) | low | > 78 |
| Klebsiella pneumoniae MKP103 | 0.17 | KDGMDA_26550 | | multidrug resistance outer membrane protein MdtQ | 0.55 | KDGMDA_18160 | | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | low | > 95 |
| Enterobacter sp. TBS_079 | 0.17 | MPMX20_03107 | | Antibiotic efflux pump outer membrane protein ArpC | 0.56 | MPMX20_01599 | | Ribosomal RNA large subunit methyltransferase K/L | low | > 85 |
| Pseudomonas sp. S08-1 | 0.16 | OH686_00935 | | Outer membrane factor (OMF) lipoprotein associated wth MdtABC efflux system | 0.41 | OH686_03110 | | 23S rRNA (guanine(2445)-N(2))-methyltransferase / 23S rRNA (guanine(2069)-N(7))-methyltransferase | low | > 80 |
| Escherichia coli ECRC101 | 0.16 | MCAODC_03275 | mdtP | multidrug efflux transporter outer membrane subunit MdtP | 0.57 | MCAODC_24670 | rlmKL | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | low | > 88 |
| Escherichia coli ECRC102 | 0.16 | NIAGMN_10610 | mdtP | multidrug efflux transporter outer membrane subunit MdtP | 0.57 | NIAGMN_03000 | rlmKL | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | low | > 80 |
| Escherichia coli ECRC98 | 0.16 | JDDGAC_16400 | mdtP | multidrug efflux transporter outer membrane subunit MdtP | 0.57 | JDDGAC_08890 | rlmKL | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | low | > 87 |
| Escherichia coli ECRC100 | 0.16 | OKFHMN_12765 | mdtP | multidrug efflux transporter outer membrane subunit MdtP | 0.57 | OKFHMN_05280 | rlmKL | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | low | > 79 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.16 | OHPLBJKB_03959 | | Cation efflux system protein CusC | 0.57 | OHPLBJKB_02718 | | Ribosomal RNA large subunit methyltransferase K/L | low | > 74 |
| Escherichia coli ECRC62 | 0.16 | BNILDI_06505 | mdtP | multidrug efflux transporter outer membrane subunit MdtP | 0.57 | BNILDI_20000 | rlmKL | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | low | > 75 |
| Escherichia coli ECOR27 | 0.16 | NOLOHH_05020 | mdtP | multidrug efflux transporter outer membrane subunit MdtP | 0.57 | NOLOHH_21835 | rlmKL | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | low | > 76 |
| Escherichia fergusonii Becca | 0.15 | EFB2_04503 | | Cation efflux system protein CusC | 0.57 | EFB2_03123 | | Ribosomal RNA large subunit methyltransferase K/L | low | > 86 |
| Escherichia coli Nissle 1917 | 0.15 | ECOLIN_RS23635 | | multidrug efflux transporter outer membrane subunit MdtP | 0.57 | ECOLIN_RS04980 | | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | low | > 55 |
| Escherichia coli ECOR38 | 0.15 | HEPCGN_11395 | mdtP | multidrug efflux transporter outer membrane subunit MdtP | 0.57 | HEPCGN_23240 | rlmKL | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | low | > 88 |
| Escherichia coli ECRC99 | 0.15 | KEDOAH_15385 | mdtP | multidrug efflux transporter outer membrane subunit MdtP | 0.57 | KEDOAH_22455 | rlmKL | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | — | — |
| Escherichia coli BL21 | 0.15 | ECD_03952 | | outer membrane factor of efflux pump | 0.57 | ECD_00952 | | 23S rRNA m(2)G2445 and m(7)G2069 methyltransferases, SAM-dependent | low | > 61 |
| Escherichia coli BW25113 | 0.15 | b4080 | yjcP | predicted outer membrane factor of efflux pump (NCBI) | 0.57 | b0948 | ycbY | predicted methyltransferase (NCBI) | low | > 76 |
| Acinetobacter baumannii LAC-4 | 0.15 | RR41_RS06060 | | multidrug efflux RND transporter outer membrane subunit AdeH | 0.36 | RR41_RS10075 | | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | low | > 55 |
| Erwinia tracheiphila SCR3 | 0.15 | LU632_RS09495 | | efflux transporter outer membrane subunit | 0.54 | LU632_RS09965 | rlmKL | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | low | > 74 |
| Pantoea agglomerans CFBP13505 P0401 | 0.14 | PagCFBP13505_RS04945 | | efflux transporter outer membrane subunit | 0.57 | PagCFBP13505_RS04640 | | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | low | > 74 |
| Erwinia tracheiphila HP pepo 2.2 | 0.14 | IJEDHG_19970 | | RND transporter | 0.53 | IJEDHG_20480 | rlmKL | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | low | > 61 |
| Pantoea sp. MT58 | 0.14 | IAI47_12395 | | efflux transporter outer membrane subunit | 0.57 | IAI47_12690 | | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | low | > 76 |
| Dickeya dadantii 3937 | 0.14 | DDA3937_RS14115 | | efflux transporter outer membrane subunit | 0.56 | DDA3937_RS12840 | | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | low | > 74 |
| Kangiella aquimarina DSM 16071 | 0.14 | B158DRAFT_0732 | | efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family | 0.38 | B158DRAFT_2229 | | 23S rRNA m(2)G-2445 methyltransferase (EC 2.1.1.52) | low | > 40 |
| Pseudomonas stutzeri RCH2 | 0.14 | Psest_2141 | | efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family | 0.42 | Psest_1949 | | Predicted N6-adenine-specific DNA methylase | low | > 67 |
| Dickeya dianthicola 67-19 | 0.14 | HGI48_RS14115 | | efflux transporter outer membrane subunit | 0.56 | HGI48_RS12910 | | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | low | > 71 |
| Erwinia amylovora T8 | 0.14 | OLJFJH_16410 | | RND transporter | 0.55 | OLJFJH_15975 | | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | low | > 58 |
| Shewanella sp. ANA-3 | 0.13 | Shewana3_1994 | | outer membrane efflux protein (RefSeq) | 0.49 | Shewana3_1601 | rlmL | 23S rRNA m(2)G2445 methyltransferase (RefSeq) | low | > 73 |
| Dickeya dianthicola ME23 | 0.12 | DZA65_RS03600 | | efflux transporter outer membrane subunit | 0.56 | DZA65_RS13375 | | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | low | > 75 |
| Pectobacterium carotovorum WPP14 | 0.11 | HER17_RS07525 | | efflux transporter outer membrane subunit | 0.56 | HER17_RS11990 | | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | low | > 75 |
| Shewanella oneidensis MR-1 | 0.11 | SO0822 | | outer membrane efflux family protein (NCBI ptt file) | 0.49 | SO1851 | | conserved hypothetical protein (NCBI ptt file) | low | > 76 |
| Alteromonas macleodii MIT1002 | 0.11 | MIT1002_00868 | | Toluene efflux pump outer membrane protein TtgF precursor | 0.44 | MIT1002_02036 | | Ribosomal RNA large subunit methyltransferase K/L | low | > 70 |
Not shown: 43 genomes with orthologs for CSW01_07065 only; 4 genomes with orthologs for CSW01_07480 only