Conservation of cofitness between CSW01_01445 and CSW01_07190 in Vibrio cholerae E7946 ATCC 55056

54 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_01445 lysine decarboxylase 1.0 CSW01_07190 transcriptional regulator FNR 0.90 2
Escherichia coli Nissle 1917 0.78 ECOLIN_RS23905 lysine decarboxylase CadA 0.85 ECOLIN_RS08005 fumarate/nitrate reduction transcriptional regulator Fnr low > 55
Escherichia coli ECOR38 0.78 HEPCGN_11110 cadA lysine decarboxylase CadA 0.85 HEPCGN_25925 fnr fumarate/nitrate reduction transcriptional regulator Fnr low > 88
Escherichia fergusonii Becca 0.78 EFB2_04451 Inducible lysine decarboxylase 0.85 EFB2_02593 Fumarate and nitrate reduction regulatory protein low > 86
Escherichia coli ECRC101 0.78 MCAODC_02985 cadA lysine decarboxylase CadA 0.85 MCAODC_16030 fnr fumarate/nitrate reduction transcriptional regulator Fnr low > 88
Escherichia coli HS(pFamp)R (ATCC 700891) 0.78 OHPLBJKB_03912 Inducible lysine decarboxylase 0.85 OHPLBJKB_02348 Fumarate and nitrate reduction regulatory protein low > 74
Escherichia coli ECRC102 0.78 NIAGMN_10320 cadA lysine decarboxylase CadA 0.85 NIAGMN_26410 fnr fumarate/nitrate reduction transcriptional regulator Fnr 0.57 56
Escherichia coli ECRC98 0.78 JDDGAC_16110 cadA lysine decarboxylase CadA 0.85 JDDGAC_04785 fnr fumarate/nitrate reduction transcriptional regulator Fnr low > 87
Escherichia coli ECRC100 0.78 OKFHMN_12475 cadA lysine decarboxylase CadA 0.85 OKFHMN_02240 fnr fumarate/nitrate reduction transcriptional regulator Fnr low > 79
Escherichia coli ECRC62 0.78 BNILDI_06750 cadA lysine decarboxylase CadA 0.85 BNILDI_18090 fnr fumarate/nitrate reduction transcriptional regulator Fnr low > 75
Escherichia coli ECRC99 0.78 KEDOAH_15690 cadA lysine decarboxylase CadA 0.85 KEDOAH_26530 fnr fumarate/nitrate reduction transcriptional regulator Fnr — —
Escherichia coli ECOR27 0.78 NOLOHH_04740 cadA lysine decarboxylase CadA 0.85 NOLOHH_19940 fnr fumarate/nitrate reduction transcriptional regulator Fnr low > 76
Escherichia coli BW25113 0.78 b4131 cadA lysine decarboxylase 1 (NCBI) 0.85 b1334 fnr DNA-binding transcriptional dual regulator, global regulator of anaerobic growth (NCBI) 0.45 9
Klebsiella michiganensis M5al 0.78 BWI76_RS07195 lysine decarboxylase CadA 0.85 BWI76_RS16185 transcriptional regulator FNR — —
Klebsiella pneumoniae MKP103 0.78 KDGMDA_15475 lysine decarboxylase CadA 0.85 KDGMDA_21005 fumarate/nitrate reduction transcriptional regulator Fnr low > 95
Serratia liquefaciens MT49 0.77 IAI46_20145 lysine decarboxylase CadA 0.86 IAI46_13260 FNR family transcription factor low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.77 GFF2452 Lysine decarboxylase, inducible (EC 4.1.1.18) 0.85 GFF2656 Fumarate and nitrate reduction regulatory protein low > 78
Enterobacter asburiae PDN3 0.71 EX28DRAFT_3774 Arginine/lysine/ornithine decarboxylases 0.84 EX28DRAFT_1540 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases low > 76
Enterobacter sp. TBS_079 0.71 MPMX20_00870 Constitutive lysine decarboxylase 0.85 MPMX20_02035 Fumarate and nitrate reduction regulatory protein low > 85
Rahnella sp. WP5 0.71 EX31_RS12950 lysine decarboxylase LdcC 0.86 EX31_RS07200 FNR family transcription factor low > 89
Pantoea sp. MT58 0.70 IAI47_15445 lysine decarboxylase LdcC 0.85 IAI47_09580 FNR family transcription factor low > 76
Pantoea agglomerans CFBP13505 P0401 0.70 PagCFBP13505_RS13560 lysine decarboxylase LdcC 0.86 PagCFBP13505_RS06575 fumarate/nitrate reduction transcriptional regulator Fnr 0.53 65
Erwinia amylovora T8 0.70 OLJFJH_00545 lysine decarboxylase LdcC 0.83 OLJFJH_13925 transcriptional regulator FNR low > 58
Pseudomonas sp. S08-1 0.39 OH686_03560 Lysine decarboxylase, inducible 0.53 OH686_02245 Fumarate and nitrate reduction regulatory protein low > 80
Pseudomonas aeruginosa PA14 0.39 IKLFDK_08840 lysine-specific pyridoxal 5'-phosphate-dependent carboxylase LdcA 0.53 IKLFDK_07375 transcriptional regulator Anr low > 100
Pseudomonas segetis P6 0.38 MPMX49_02802 Biodegradative arginine decarboxylase 0.54 MPMX49_02303 Transcriptional activator protein Anr low > 75
Pseudomonas stutzeri RCH2 0.38 Psest_2075 Arginine/lysine/ornithine decarboxylases 0.53 Psest_2538 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases low > 67
Pseudomonas lactucae CFBP13502 0.38 GEMAOFIL_02693 Biodegradative arginine decarboxylase 0.53 GEMAOFIL_04302 Transcriptional activator protein Anr — —
Pseudomonas fluorescens FW300-N1B4 0.38 Pf1N1B4_4600 Lysine decarboxylase, inducible (EC 4.1.1.18) 0.53 Pf1N1B4_3867 Fumarate and nitrate reduction regulatory protein — —
Pseudomonas fluorescens GW456-L13 0.38 PfGW456L13_3336 Lysine decarboxylase, inducible (EC 4.1.1.18) 0.54 PfGW456L13_4071 Fumarate and nitrate reduction regulatory protein low > 87
Pseudomonas fluorescens FW300-N2E3 0.38 AO353_23560 lysine decarboxylase 0.53 AO353_00660 transcriptional regulator low > 101
Pseudomonas fluorescens SBW25 0.38 PFLU_RS12930 lysine decarboxylase 0.53 PFLU_RS22395 fumarate/nitrate reduction transcriptional regulator Fnr low > 109
Pseudomonas fluorescens SBW25-INTG 0.38 PFLU_RS12930 lysine decarboxylase 0.53 PFLU_RS22395 fumarate/nitrate reduction transcriptional regulator Fnr low > 109
Pseudomonas simiae WCS417 0.38 PS417_12240 lysine decarboxylase 0.53 PS417_20785 transcriptional regulator low > 88
Pseudomonas sp. SVBP6 0.37 COO64_RS19270 Orn/Lys/Arg decarboxylase N-terminal domain-containing protein 0.52 COO64_RS18640 fnrA Crp/Fnr family transcriptional regulator FnrA low > 93
Pseudomonas putida KT2440 0.37 PP_4140 lysine decarboxylase 0.52 PP_4265 DNA-binding transcriptional dual regulator low > 96
Pseudomonas sp. BP01 0.36 JOY50_RS07070 Orn/Lys/Arg decarboxylase N-terminal domain-containing protein 0.52 JOY50_RS00125 fnrA Crp/Fnr family transcriptional regulator FnrA low > 84
Cupriavidus basilensis FW507-4G11 0.34 RR42_RS15940 lysine decarboxylase 0.40 RR42_RS12875 transcriptional regulator — —
Ralstonia solanacearum PSI07 0.34 RPSI07_RS13045 lysine decarboxylase 0.38 RPSI07_RS17705 fumarate/nitrate reduction transcriptional regulator Fnr — —
Dechlorosoma suillum PS 0.34 Dsui_1245 arginine/lysine/ornithine decarboxylase 0.40 Dsui_1646 cAMP-binding protein — —
Ralstonia solanacearum IBSBF1503 0.34 RALBFv3_RS04325 lysine decarboxylase 0.38 RALBFv3_RS15650 fumarate/nitrate reduction transcriptional regulator Fnr — —
Ralstonia solanacearum UW163 0.34 UW163_RS09345 lysine decarboxylase 0.38 UW163_RS13110 fumarate/nitrate reduction transcriptional regulator Fnr — —
Ralstonia solanacearum GMI1000 0.34 RS_RS11875 lysine decarboxylase 0.38 RS_RS06430 fumarate/nitrate reduction transcriptional regulator Fnr — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.34 GFF4333 Arginine decarboxylase (EC 4.1.1.19); Ornithine decarboxylase (EC 4.1.1.17); Lysine decarboxylase (EC 4.1.1.18) 0.39 GFF4142 transcriptional regulator, Crp/Fnr family low > 90
Herbaspirillum seropedicae SmR1 0.34 HSERO_RS17280 lysine decarboxylase 0.41 HSERO_RS16020 transcriptional regulator — —
Ralstonia sp. UNC404CL21Col 0.34 ABZR87_RS16180 arginine/lysine/ornithine decarboxylase 0.39 ABZR87_RS11180 fumarate/nitrate reduction transcriptional regulator Fnr low > 80
Paraburkholderia sabiae LMG 24235 0.34 QEN71_RS25000 arginine/lysine/ornithine decarboxylase 0.38 QEN71_RS17975 helix-turn-helix domain-containing protein — —
Methylophilus sp. DMC18 0.34 GFF1062 Biodegradative arginine decarboxylase 0.38 GFF1089 Transcriptional activator protein Anr — —
Acidovorax sp. GW101-3H11 0.33 Ac3H11_2914 Arginine decarboxylase (EC 4.1.1.19); Ornithine decarboxylase (EC 4.1.1.17); Lysine decarboxylase (EC 4.1.1.18) 0.38 Ac3H11_975 transcriptional regulator, Crp/Fnr family — —
Burkholderia phytofirmans PsJN 0.33 BPHYT_RS04980 lysine decarboxylase 0.38 BPHYT_RS31300 Crp/Fnr family transcriptional regulator — —
Paraburkholderia graminis OAS925 0.33 ABIE53_001270 arginine decarboxylase 0.35 ABIE53_004332 CRP/FNR family transcriptional regulator — —
Paraburkholderia bryophila 376MFSha3.1 0.33 H281DRAFT_00160 ornithine decarboxylase 0.36 H281DRAFT_01640 transcriptional regulator, Crp/Fnr family — —
Castellaniella sp019104865 MT123 0.33 ABCV34_RS08900 arginine/lysine/ornithine decarboxylase 0.34 ABCV34_RS06835 helix-turn-helix domain-containing protein — —
Variovorax sp. SCN45 0.33 GFF232 Arginine decarboxylase (EC 4.1.1.19); Ornithine decarboxylase (EC 4.1.1.17); Lysine decarboxylase (EC 4.1.1.18) 0.22 GFF6947 transcriptional regulator, Crp/Fnr family low > 127
Kangiella aquimarina DSM 16071 0.15 B158DRAFT_0656 Arginine/lysine/ornithine decarboxylases 0.56 B158DRAFT_1982 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases low > 40

Not shown: 4 genomes with orthologs for CSW01_01445 only; 38 genomes with orthologs for CSW01_07190 only