Conservation of cofitness between CSW01_00365 and CSW01_05390 in Vibrio cholerae E7946 ATCC 55056

45 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_00365 aminopeptidase P family protein 1.0 CSW01_05390 YciK family oxidoreductase 0.60 2
Shewanella amazonensis SB2B 0.54 Sama_0684 aminopeptidase P, putative (RefSeq) 0.61 Sama_2121 short chain dehydrogenase (RefSeq) low > 62
Shewanella oneidensis MR-1 0.53 SO1388 aminopeptidase P, putative (NCBI ptt file) 0.60 SO2935 oxidoreductase, short-chain dehydrogenase/reductase family (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.53 Shew_0952 peptidase M24 (RefSeq) 0.65 Shew_2409 short chain dehydrogenase (RefSeq) low > 60
Shewanella sp. ANA-3 0.53 Shewana3_2986 peptidase M24 (RefSeq) 0.58 Shewana3_1528 short chain dehydrogenase (RefSeq) low > 73
Azospirillum brasilense Sp245 0.47 AZOBR_RS12420 X-Pro aminopeptidase 0.28 AZOBR_RS08305 oxidoreductase low > 97
Azospirillum sp. SherDot2 0.46 MPMX19_01606 hypothetical protein 0.29 MPMX19_00907 putative oxidoreductase YciK low > 112
Magnetospirillum magneticum AMB-1 0.44 AMB_RS03790 aminopeptidase P family protein 0.25 AMB_RS10540 KR domain-containing protein low > 64
Rhodospirillum rubrum S1H 0.44 Rru_A2865 Peptidase M24 (NCBI) 0.32 Rru_A0403 Short-chain dehydrogenase/reductase SDR (NCBI) — —
Sphingobium sp. HT1-2 0.44 GFF835 Xaa-Pro aminopeptidase (EC 3.4.11.9) 0.23 GFF78 Putative oxidoreductase low > 95
Caulobacter crescentus NA1000 Δfur 0.43 CCNA_01593 Xaa-pro aminopeptidase 0.27 CCNA_01728 short chain dehydrogenase low > 67
Caulobacter crescentus NA1000 0.43 CCNA_01593 Xaa-pro aminopeptidase 0.27 CCNA_01728 short chain dehydrogenase 0.86 20
Sphingomonas koreensis DSMZ 15582 0.43 Ga0059261_1846 Xaa-Pro aminopeptidase 0.24 Ga0059261_3625 Short-chain dehydrogenases of various substrate specificities low > 68
Agrobacterium fabrum C58 0.41 Atu2070 aminopeptidase P 0.31 Atu1074 NAD/NADP dependent oxidoreductase low > 89
Rhodopseudomonas palustris CGA009 0.40 TX73_018220 aminopeptidase P family protein 0.24 TX73_015995 SDR family NAD(P)-dependent oxidoreductase — —
Brevundimonas sp. GW460-12-10-14-LB2 0.39 A4249_RS04630 aminopeptidase P family protein 0.26 A4249_RS03730 SDR family NAD(P)-dependent oxidoreductase low > 48
Rhizobium sp. OAE497 0.39 ABIE40_RS11720 aminopeptidase P family protein 0.29 ABIE40_RS06265 SDR family NAD(P)-dependent oxidoreductase low > 107
Bosea sp. OAE506 0.38 ABIE41_RS12700 aminopeptidase P family protein 0.25 ABIE41_RS17815 SDR family NAD(P)-dependent oxidoreductase low > 77
Sinorhizobium meliloti 1021 0.38 SMc01885 aminopeptidase P protein 0.28 SMc00553 oxidoreductase — —
Xanthobacter sp. DMC5 0.37 GFF2405 hypothetical protein 0.27 GFF1874 putative oxidoreductase YciK — —
Enterobacter sp. TBS_079 0.36 MPMX20_02988 hypothetical protein 0.49 MPMX20_02505 putative oxidoreductase YciK low > 85
Enterobacter asburiae PDN3 0.36 EX28DRAFT_0554 Xaa-Pro aminopeptidase 0.48 EX28DRAFT_0942 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) low > 76
Dinoroseobacter shibae DFL-12 0.36 Dshi_2721 peptidase M24 (RefSeq) 0.21 Dshi_2135 short-chain dehydrogenase/reductase SDR (RefSeq) — —
Pseudomonas lactucae CFBP13502 0.29 GEMAOFIL_02118 hypothetical protein 0.50 GEMAOFIL_01754 putative oxidoreductase YciK low > 96
Pseudomonas fluorescens SBW25 0.29 PFLU_RS10130 aminopeptidase P family protein 0.50 PFLU_RS08060 YciK family oxidoreductase low > 109
Pseudomonas fluorescens SBW25-INTG 0.29 PFLU_RS10130 aminopeptidase P family protein 0.50 PFLU_RS08060 YciK family oxidoreductase low > 109
Pseudomonas sp. DMC3 0.29 GFF4528 hypothetical protein 0.50 GFF4684 putative oxidoreductase YciK low > 89
Pseudomonas simiae WCS417 0.29 PS417_09480 peptidase M24 0.50 PS417_08090 3-oxoacyl-ACP reductase low > 88
Pseudomonas fluorescens GW456-L13 0.29 PfGW456L13_2317 Xaa-Pro aminopeptidase (EC 3.4.11.9) 0.50 PfGW456L13_2169 Oxidoreductase, short chain dehydrogenase/reductase family low > 87
Pseudomonas orientalis W4I3 0.29 QF045_RS12100 aminopeptidase P family protein 0.50 QF045_RS10810 YciK family oxidoreductase low > 93
Pseudomonas syringae pv. syringae B728a 0.29 Psyr_3219 Peptidase M24 0.46 Psyr_3652 Short-chain dehydrogenase/reductase SDR low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.29 Psyr_3219 Peptidase M24 0.46 Psyr_3652 Short-chain dehydrogenase/reductase SDR low > 86
Pseudomonas sp. SVBP6 0.28 COO64_RS19465 aminopeptidase P family protein 0.50 COO64_RS06780 YciK family oxidoreductase low > 93
Pseudomonas fluorescens FW300-N1B4 0.28 Pf1N1B4_191 Xaa-Pro aminopeptidase (EC 3.4.11.9) 0.50 Pf1N1B4_358 Oxidoreductase, short chain dehydrogenase/reductase family low > 87
Pseudomonas fluorescens FW300-N2C3 0.28 AO356_20955 peptidase M24 0.49 AO356_03500 3-oxoacyl-ACP reductase low > 104
Pseudomonas sp. RS175 0.28 PFR28_02909 hypothetical protein 0.47 PFR28_00899 putative oxidoreductase YciK — —
Pseudomonas fluorescens FW300-N2E3 0.28 AO353_19410 peptidase M24 0.50 AO353_02105 3-oxoacyl-ACP reductase — —
Acinetobacter baumannii LAC-4 0.28 RR41_RS05635 aminopeptidase P family protein 0.52 RR41_RS18735 YciK family oxidoreductase low > 55
Pseudomonas fluorescens FW300-N2E2 0.28 Pf6N2E2_6078 Xaa-Pro aminopeptidase (EC 3.4.11.9) 0.48 Pf6N2E2_2527 Oxidoreductase, short chain dehydrogenase/reductase family low > 103
Dyella japonica UNC79MFTsu3.2 0.27 ABZR86_RS06645 aminopeptidase P family protein 0.31 ABZR86_RS09815 SDR family NAD(P)-dependent oxidoreductase low > 74
Rhodanobacter sp. FW510-T8 0.27 OKGIIK_08170 pepP Xaa-Pro aminopeptidase 0.32 OKGIIK_03065 yqjQ Short-chain dehydrogenase low > 53
Rhodanobacter denitrificans FW104-10B01 0.26 LRK54_RS16600 aminopeptidase P family protein 0.32 LRK54_RS13830 SDR family NAD(P)-dependent oxidoreductase 0.80 54
Pseudomonas sp. BP01 0.26 JOY50_RS28395 aminopeptidase P family protein 0.49 JOY50_RS16170 YciK family oxidoreductase — —
Rhodanobacter denitrificans MT42 0.26 LRK55_RS16325 aminopeptidase P family protein 0.32 LRK55_RS13545 SDR family NAD(P)-dependent oxidoreductase low > 63
Pseudomonas putida KT2440 0.26 PP_2238 putative metallopeptidase 0.48 PP_1763 putative oxidoreductase low > 96
Rhodanobacter sp000427505 FW510-R12 0.25 LRK53_RS12325 aminopeptidase P family protein 0.32 LRK53_RS14770 SDR family NAD(P)-dependent oxidoreductase low > 59

Not shown: 15 genomes with orthologs for CSW01_00365 only; 39 genomes with orthologs for CSW01_05390 only