Conservation of cofitness between CSW01_03340 and CSW01_05070 in Vibrio cholerae E7946 ATCC 55056

55 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_03340 ribosomal RNA large subunit methyltransferase E 1.0 CSW01_05070 N-acetylglucosamine-6-phosphate deacetylase 0.44 16
Shewanella amazonensis SB2B 0.77 Sama_0953 rrmJ 23S rRNA methyltransferase J (RefSeq) 0.29 Sama_0946 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) (from data) low > 62
Shewanella loihica PV-4 0.77 Shew_2835 rrmJ 23S rRNA methyltransferase J (RefSeq) 0.30 Shew_1117 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) (from data) — —
Shewanella oneidensis MR-1 0.76 SO1196 rrmJ ribosomal RNA large subunit methyltransferase J (NCBI ptt file) 0.31 SO3505 nagA N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) (from data) low > 76
Alteromonas macleodii MIT1002 0.74 MIT1002_01864 Ribosomal RNA large subunit methyltransferase E 0.27 MIT1002_00910 N-acetylglucosamine-6-phosphate deacetylase low > 70
Enterobacter sp. TBS_079 0.72 MPMX20_04083 Ribosomal RNA large subunit methyltransferase E 0.63 MPMX20_01323 N-acetylglucosamine-6-phosphate deacetylase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.72 OHPLBJKB_00521 Ribosomal RNA large subunit methyltransferase E 0.63 OHPLBJKB_03038 N-acetylglucosamine-6-phosphate deacetylase — —
Escherichia coli ECOR38 0.72 HEPCGN_16930 rlmE 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE 0.63 HEPCGN_01065 nagA N-acetylglucosamine-6-phosphate deacetylase — —
Escherichia coli ECRC98 0.72 JDDGAC_21680 rlmE 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE 0.63 JDDGAC_10815 nagA N-acetylglucosamine-6-phosphate deacetylase — —
Escherichia coli ECRC99 0.72 KEDOAH_10095 rlmE 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE 0.63 KEDOAH_20805 nagA N-acetylglucosamine-6-phosphate deacetylase — —
Escherichia coli BL21 0.72 ECD_03044 23S rRNA U2552 2'-O-ribose methyltransferase, SAM-dependent 0.63 ECD_00634 N-acetylglucosamine-6-phosphate deacetylase — —
Escherichia coli BW25113 0.72 b3179 rlmE 23S rRNA U2552 ribose 2'-O-methyltransferase, SAM-dependent (NCBI) 0.63 b0677 nagA N-acetylglucosamine-6-phosphate deacetylase (NCBI) — —
Escherichia coli ECOR27 0.72 NOLOHH_09855 rlmE 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE 0.63 NOLOHH_23545 nagA N-acetylglucosamine-6-phosphate deacetylase — —
Escherichia coli ECRC102 0.72 NIAGMN_15815 rlmE 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE 0.63 NIAGMN_05220 nagA N-acetylglucosamine-6-phosphate deacetylase — —
Escherichia coli ECRC101 0.72 MCAODC_08575 rlmE 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE 0.63 MCAODC_26380 nagA N-acetylglucosamine-6-phosphate deacetylase — —
Escherichia coli ECRC100 0.72 OKFHMN_18055 rlmE 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE 0.63 OKFHMN_07165 nagA N-acetylglucosamine-6-phosphate deacetylase — —
Escherichia coli Nissle 1917 0.72 ECOLIN_RS18310 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE 0.63 ECOLIN_RS03615 N-acetylglucosamine-6-phosphate deacetylase — —
Escherichia fergusonii Becca 0.72 EFB2_00644 Ribosomal RNA large subunit methyltransferase E 0.63 EFB2_03426 N-acetylglucosamine-6-phosphate deacetylase — —
Escherichia coli ECRC62 0.72 BNILDI_01680 rlmE 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE 0.63 BNILDI_21550 nagA N-acetylglucosamine-6-phosphate deacetylase — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.72 GFF2920 Cell division protein FtsJ / Ribosomal RNA large subunit methyltransferase E (EC 2.1.1.-) ## LSU rRNA Um2552 0.62 GFF4585 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) — —
Enterobacter asburiae PDN3 0.72 EX28DRAFT_3230 cell division protein FtsJ 0.64 EX28DRAFT_2298 N-acetylglucosamine-6-phosphate deacetylase — —
Dickeya dianthicola 67-19 0.72 HGI48_RS03195 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE 0.63 HGI48_RS06350 N-acetylglucosamine-6-phosphate deacetylase — —
Pantoea sp. MT58 0.72 IAI47_17070 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE 0.64 IAI47_13885 N-acetylglucosamine-6-phosphate deacetylase — —
Pantoea agglomerans CFBP13505 P0401 0.72 PagCFBP13505_RS09165 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE 0.64 PagCFBP13505_RS03420 N-acetylglucosamine-6-phosphate deacetylase — —
Klebsiella pneumoniae MKP103 0.71 KDGMDA_05965 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE 0.65 KDGMDA_16555 N-acetylglucosamine-6-phosphate deacetylase — —
Erwinia tracheiphila HP pepo 2.2 0.71 IJEDHG_13875 rlmE 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE 0.61 IJEDHG_02305 nagA N-acetylglucosamine-6-phosphate deacetylase — —
Dickeya dadantii 3937 0.71 DDA3937_RS03025 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE 0.64 DDA3937_RS06305 N-acetylglucosamine-6-phosphate deacetylase — —
Dickeya dianthicola ME23 0.71 DZA65_RS03190 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE 0.63 DZA65_RS06695 N-acetylglucosamine-6-phosphate deacetylase — —
Erwinia tracheiphila SCR3 0.71 LU632_RS21110 rlmE 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE 0.61 LU632_RS16250 nagA N-acetylglucosamine-6-phosphate deacetylase low > 73
Klebsiella michiganensis M5al 0.71 BWI76_RS25145 23S rRNA (uridine(2552)-2'-O)-methyltransferase 0.64 BWI76_RS08210 N-acetylglucosamine-6-phosphate deacetylase — —
Serratia liquefaciens MT49 0.71 IAI46_01890 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE 0.65 IAI46_06085 N-acetylglucosamine-6-phosphate deacetylase — —
Rahnella sp. WP5 0.71 EX31_RS08585 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE 0.67 EX31_RS23260 N-acetylglucosamine-6-phosphate deacetylase — —
Pectobacterium carotovorum WPP14 0.71 HER17_RS18320 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE 0.64 HER17_RS15110 N-acetylglucosamine-6-phosphate deacetylase — —
Erwinia amylovora T8 0.70 OLJFJH_07195 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE 0.61 OLJFJH_17090 N-acetylglucosamine-6-phosphate deacetylase — —
Dyella japonica UNC79MFTsu3.2 0.59 ABZR86_RS06565 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE 0.34 ABZR86_RS16045 N-acetylglucosamine-6-phosphate deacetylase — —
Pseudomonas fluorescens FW300-N2C3 0.59 AO356_07460 23S rRNA methyltransferase 0.18 AO356_17550 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) (from data) — —
Rhodanobacter sp000427505 FW510-R12 0.57 LRK53_RS12240 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE 0.37 LRK53_RS00690 N-acetylglucosamine-6-phosphate deacetylase — —
Pseudomonas fluorescens GW456-L13 0.57 PfGW456L13_5095 Heat shock protein FtsJ/RrmJ @ Ribosomal RNA large subunit methyltransferase E (EC 2.1.1.-) 0.20 PfGW456L13_4830 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) (from data) — —
Rhodanobacter sp. FW510-T8 0.57 OKGIIK_08085 rlmE 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE 0.35 OKGIIK_14345 nagA N-acetylglucosamine-6-phosphate deacetylase — —
Pseudomonas sp. SVBP6 0.56 COO64_RS15220 rlmE 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE 0.20 COO64_RS04730 nagA N-acetylglucosamine-6-phosphate deacetylase — —
Rhodanobacter denitrificans FW104-10B01 0.56 LRK54_RS16680 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE 0.35 LRK54_RS07855 N-acetylglucosamine-6-phosphate deacetylase — —
Rhodanobacter denitrificans MT42 0.56 LRK55_RS16405 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE 0.35 LRK55_RS07585 N-acetylglucosamine-6-phosphate deacetylase — —
Lysobacter sp. OAE881 0.52 ABIE51_RS06520 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE 0.39 ABIE51_RS01635 N-acetylglucosamine-6-phosphate deacetylase — —
Xanthomonas campestris pv. campestris strain 8004 0.51 Xcc-8004.3125.1 Heat shock protein FtsJ/RrmJ @ Ribosomal RNA large subunit methyltransferase E (EC 2.1.1.-) 0.34 Xcc-8004.957.1 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) — —
Paraburkholderia graminis OAS925 0.44 ABIE53_003000 23S rRNA (uridine2552-2'-O)-methyltransferase 0.19 ABIE53_000689 N-acetylglucosamine-6-phosphate deacetylase — —
Paraburkholderia bryophila 376MFSha3.1 0.43 H281DRAFT_04407 23S rRNA Um-2552 2'-O-methyltransferase 0.19 H281DRAFT_05506 N-acetylglucosamine 6-phosphate deacetylase (EC 3.5.1.25) — —
Burkholderia phytofirmans PsJN 0.43 BPHYT_RS14170 ribosomal RNA large subunit methyltransferase E 0.19 BPHYT_RS02730 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) (from data) — —
Azospirillum sp. SherDot2 0.43 MPMX19_01691 Ribosomal RNA large subunit methyltransferase E 0.30 MPMX19_03613 N-acetylglucosamine-6-phosphate deacetylase — —
Azospirillum brasilense Sp245 0.42 AZOBR_RS16115 23S rRNA methyltransferase 0.40 AZOBR_RS11675 N-acetylglucosamine 6-phosphate deacetylase — —
Agrobacterium fabrum C58 0.38 Atu0620 cell division protein 0.31 Atu2608 N-acetylglucosamine-6-phosphate deacetylase — —
Sinorhizobium meliloti 1021 0.37 SMc00811 cell division protein 0.32 SMc02878 N-acetylglucosamine-6-phosphate deacetylase — —
Rhizobium sp. OAE497 0.36 ABIE40_RS03440 RlmE family RNA methyltransferase 0.29 ABIE40_RS18570 N-acetylglucosamine-6-phosphate deacetylase — —
Sphingobium sp. HT1-2 0.36 GFF3171 '23S rRNA (uridine(2552)-2'-O)-methyltransferase (EC 2.1.1.166)' transl_table=11 0.33 GFF1231 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) — —
Caulobacter crescentus NA1000 Δfur 0.34 CCNA_01687 FtsJ-family 23S rRNA methylase 0.35 CCNA_00452 N-acetylglucosamine-6-phosphate deacetylase — —
Caulobacter crescentus NA1000 0.34 CCNA_01687 FtsJ-family 23S rRNA methylase 0.35 CCNA_00452 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) (from data) — —
Phaeobacter inhibens DSM 17395 0.33 PGA1_c16080 ribosomal RNA large subunit methyltransferase J 0.32 PGA1_c27880 N-acetylglucosamine-6-phosphate deacetylase NagA — —

Not shown: 49 genomes with orthologs for CSW01_03340 only; 13 genomes with orthologs for CSW01_05070 only