Conservation of cofitness between CSW01_10130 and CSW01_05055 in Vibrio cholerae E7946 ATCC 55056

54 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_10130 23S rRNA pseudouridine(955/2504/2580) synthase RluC 1.0 CSW01_05055 asparagine synthase B 0.48 9
Klebsiella michiganensis M5al 0.64 BWI76_RS11050 23S rRNA pseudouridine(955/2504/2580) synthase 0.79 BWI76_RS08180 asparagine synthase B low > 92
Enterobacter sp. TBS_079 0.64 MPMX20_01766 Ribosomal large subunit pseudouridine synthase C 0.80 MPMX20_01320 Asparagine synthetase B [glutamine-hydrolyzing] low > 85
Enterobacter asburiae PDN3 0.64 EX28DRAFT_1844 pseudouridine synthase, RluA family 0.79 EX28DRAFT_2301 asparagine synthase (glutamine-hydrolyzing) low > 76
Klebsiella pneumoniae MKP103 0.63 KDGMDA_18660 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.80 KDGMDA_16540 asparagine synthase B low > 95
Escherichia coli BW25113 0.63 b1086 rluC 23S rRNA pseudouridylate synthase (NCBI) 0.79 b0674 asnB asparagine synthetase B (NCBI) low > 76
Escherichia coli ECOR38 0.63 HEPCGN_23865 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.79 HEPCGN_01050 asnB asparagine synthase B low > 88
Rahnella sp. WP5 0.63 EX31_RS24400 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.78 EX31_RS23245 asparagine synthase B low > 89
Escherichia coli ECRC62 0.63 BNILDI_19305 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.79 BNILDI_21565 asnB asparagine synthase B low > 75
Escherichia fergusonii Becca 0.63 EFB2_02889 Ribosomal large subunit pseudouridine synthase C 0.79 EFB2_03429 Asparagine synthetase B [glutamine-hydrolyzing] low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.63 OHPLBJKB_02580 Ribosomal large subunit pseudouridine synthase C 0.79 OHPLBJKB_03042 Asparagine synthetase B [glutamine-hydrolyzing] low > 74
Escherichia coli BL21 0.63 ECD_01082 23S rRNA pseudouridine(955,2504,2580) synthase 0.79 ECD_00631 asparagine synthetase B low > 61
Escherichia coli ECOR27 0.63 NOLOHH_21145 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.79 NOLOHH_23560 asnB asparagine synthase B low > 76
Pectobacterium carotovorum WPP14 0.63 HER17_RS08615 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.79 HER17_RS15120 asparagine synthase B low > 75
Escherichia coli Nissle 1917 0.63 ECOLIN_RS06280 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.78 ECOLIN_RS03600 asparagine synthase B low > 55
Escherichia coli ECRC101 0.63 MCAODC_22975 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.79 MCAODC_26395 asnB asparagine synthase B low > 88
Escherichia coli ECRC102 0.63 NIAGMN_24215 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.79 NIAGMN_05235 asnB asparagine synthase B low > 80
Escherichia coli ECRC100 0.63 OKFHMN_03615 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.79 OKFHMN_07180 asnB asparagine synthase B low > 79
Escherichia coli ECRC98 0.63 JDDGAC_07275 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.79 JDDGAC_10830 asnB asparagine synthase B 0.29 38
Escherichia coli ECRC99 0.63 KEDOAH_24140 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.79 KEDOAH_20790 asnB asparagine synthase B — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.62 GFF3366 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.79 GFF4582 Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4) low > 78
Erwinia amylovora T8 0.62 OLJFJH_15565 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.77 OLJFJH_17105 Asparagine synthase B low > 58
Pantoea agglomerans CFBP13505 P0401 0.62 PagCFBP13505_RS05230 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.76 PagCFBP13505_RS03405 asparagine synthase B low > 74
Pantoea sp. MT58 0.62 IAI47_12105 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.77 IAI47_13900 asparagine synthase B low > 76
Erwinia tracheiphila SCR3 0.62 LU632_RS14855 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.78 LU632_RS16265 asnB asparagine synthase B — —
Erwinia tracheiphila HP pepo 2.2 0.62 IJEDHG_00715 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.78 IJEDHG_02320 Asparagine synthase B — —
Serratia liquefaciens MT49 0.61 IAI46_09755 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.78 IAI46_06065 asparagine synthase B low > 86
Shewanella sp. ANA-3 0.61 Shewana3_2566 ribosomal large subunit pseudouridine synthase C (RefSeq) 0.73 Shewana3_2549 asnB asparagine synthetase B (RefSeq) low > 73
Shewanella loihica PV-4 0.60 Shew_1594 RluA family pseudouridine synthase (RefSeq) 0.73 Shew_1509 asnB asparagine synthetase B (RefSeq) low > 60
Shewanella amazonensis SB2B 0.60 Sama_1988 pseudouridylate synthase (RefSeq) 0.74 Sama_2101 asnB asparagine synthetase B (RefSeq) low > 62
Dickeya dianthicola ME23 0.59 DZA65_RS13690 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.80 DZA65_RS06685 asparagine synthase B low > 75
Dickeya dianthicola 67-19 0.59 HGI48_RS13220 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.80 HGI48_RS06340 asparagine synthase B low > 71
Alteromonas macleodii MIT1002 0.57 MIT1002_01725 Ribosomal large subunit pseudouridine synthase C 0.72 MIT1002_01266 Asparagine synthetase B [glutamine-hydrolyzing] low > 70
Pseudomonas sp. BP01 0.50 JOY50_RS16830 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.12 JOY50_RS16230 N-acetylglutaminylglutamine amidotransferase low > 84
Pseudomonas stutzeri RCH2 0.50 Psest_1680 pseudouridine synthase, RluA family 0.12 Psest_2930 asparagine synthase (glutamine-hydrolyzing) — —
Pseudomonas sp. S08-1 0.50 OH686_22095 LSU rRNA pseudouridine(955/2504/2580) synthase 0.12 OH686_20985 asparagine synthase (glutamine-hydrolyzing) 0.59 78
Pseudomonas putida KT2440 0.50 PP_1906 ribosomal large subunit pseudouridine synthase C 0.12 PP_1750 asparagine synthetase low > 96
Pseudomonas fluorescens FW300-N2E2 0.48 Pf6N2E2_5944 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.12 Pf6N2E2_2542 Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4) low > 103
Pseudomonas aeruginosa PA14 0.48 IKLFDK_15135 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.14 IKLFDK_10195 asparagine synthase (glutamine-hydrolyzing) low > 100
Pseudomonas sp. DMC3 0.48 GFF4765 Ribosomal large subunit pseudouridine synthase C 0.12 GFF4701 Asparagine synthetase [glutamine-hydrolyzing] 1 0.59 20
Pseudomonas lactucae CFBP13502 0.47 GEMAOFIL_04440 Ribosomal large subunit pseudouridine synthase C 0.13 GEMAOFIL_02050 Asparagine synthetase [glutamine-hydrolyzing] 1 low > 93
Pseudomonas fluorescens GW456-L13 0.46 PfGW456L13_2097 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.12 PfGW456L13_2154 Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4) low > 87
Pseudomonas fluorescens FW300-N1B4 0.45 Pf1N1B4_459 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.12 Pf1N1B4_374 Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4) — —
Acidovorax sp. GW101-3H11 0.43 Ac3H11_1590 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.12 Ac3H11_1552 Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4) low > 79
Xanthomonas campestris pv. campestris strain 8004 0.43 Xcc-8004.2616.1 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.59 Xcc-8004.3537.1 Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4) low > 74
Lysobacter sp. OAE881 0.42 ABIE51_RS11800 RluA family pseudouridine synthase 0.57 ABIE51_RS07005 asparagine synthase B low > 62
Rhodanobacter sp. FW510-T8 0.41 OKGIIK_07405 rluA 23S rRNA pseudouridine(955/2504/2580) synthase 0.60 OKGIIK_07005 asnB asparagine synthase B 0.86 7
Rhodanobacter denitrificans FW104-10B01 0.41 LRK54_RS17895 RluA family pseudouridine synthase 0.61 LRK54_RS00305 asparagine synthase B low > 59
Rhodanobacter denitrificans MT42 0.41 LRK55_RS17750 RluA family pseudouridine synthase 0.61 LRK55_RS18205 asparagine synthase B 0.79 42
Hydrogenophaga sp. GW460-11-11-14-LB1 0.41 GFF121 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.53 GFF1173 Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4) low > 90
Rhodanobacter sp000427505 FW510-R12 0.39 LRK53_RS11465 RluA family pseudouridine synthase 0.61 LRK53_RS09845 asparagine synthase B — —
Dyella japonica UNC79MFTsu3.2 0.38 ABZR86_RS02725 RluA family pseudouridine synthase 0.58 ABZR86_RS02815 asparagine synthase B low > 74
Brevundimonas sp. GW460-12-10-14-LB2 0.25 A4249_RS07865 RluA family pseudouridine synthase 0.14 A4249_RS01055 N-acetylglutaminylglutamine amidotransferase low > 48
Rhodospirillum rubrum S1H 0.25 Rru_A2659 Pseudouridine synthase, RluD (NCBI) 0.14 Rru_A1989 Asparagine synthase, glutamine-hydrolyzing (NCBI) — —
Azospirillum brasilense Sp245 0.21 AZOBR_RS06905 pseudouridine synthase 0.15 AZOBR_RS22535 asparagine synthase low > 97

Not shown: 43 genomes with orthologs for CSW01_10130 only; 11 genomes with orthologs for CSW01_05055 only