Conservation of cofitness between CSW01_03400 and CSW01_05005 in Vibrio cholerae E7946 ATCC 55056

63 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_03400 tRNA pseudouridine(55) synthase TruB 1.0 CSW01_05005 epimerase 0.51 8
Serratia liquefaciens MT49 0.72 IAI46_01945 tRNA pseudouridine(55) synthase TruB 0.52 IAI46_17780 TIGR01777 family protein low > 87
Dickeya dadantii 3937 0.71 DDA3937_RS03080 tRNA pseudouridine(55) synthase TruB 0.50 DDA3937_RS14405 TIGR01777 family protein low > 74
Dickeya dianthicola 67-19 0.70 HGI48_RS03250 tRNA pseudouridine(55) synthase TruB 0.50 HGI48_RS14375 TIGR01777 family protein low > 71
Dickeya dianthicola ME23 0.69 DZA65_RS03245 tRNA pseudouridine(55) synthase TruB 0.50 DZA65_RS15305 TIGR01777 family protein low > 75
Pectobacterium carotovorum WPP14 0.68 HER17_RS18200 tRNA pseudouridine(55) synthase TruB 0.49 HER17_RS07050 TIGR01777 family oxidoreductase low > 75
Pantoea agglomerans CFBP13505 P0401 0.68 PagCFBP13505_RS09110 tRNA pseudouridine(55) synthase TruB 0.48 PagCFBP13505_RS00280 TIGR01777 family protein low > 74
Klebsiella michiganensis M5al 0.68 BWI76_RS25080 tRNA pseudouridine(55) synthase 0.46 BWI76_RS20300 epimerase — —
Pantoea sp. MT58 0.67 IAI47_17015 tRNA pseudouridine(55) synthase TruB 0.47 IAI47_06305 TIGR01777 family protein low > 76
Erwinia amylovora T8 0.67 OLJFJH_07250 tRNA pseudouridine(55) synthase TruB 0.45 OLJFJH_11310 epimerase low > 58
Escherichia coli Nissle 1917 0.67 ECOLIN_RS18185 tRNA pseudouridine(55) synthase TruB 0.47 ECOLIN_RS13370 TIGR01777 family oxidoreductase low > 55
Escherichia coli BW25113 0.67 b3166 truB tRNA pseudouridine synthase B (NCBI) 0.47 b2304 yfcH conserved protein with NAD(P)-binding Rossmann-fold domain (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.67 OHPLBJKB_00534 tRNA pseudouridine synthase B 0.47 OHPLBJKB_01401 Epimerase family protein low > 74
Escherichia coli ECRC100 0.67 OKFHMN_18125 truB tRNA pseudouridine(55) synthase TruB 0.47 OKFHMN_22755 yfcH Epimerase family protein YfcH low > 79
Escherichia coli ECRC102 0.67 NIAGMN_15885 truB tRNA pseudouridine(55) synthase TruB 0.47 NIAGMN_20525 yfcH Epimerase family protein YfcH low > 80
Escherichia coli ECRC98 0.67 JDDGAC_21750 truB tRNA pseudouridine(55) synthase TruB 0.47 JDDGAC_26720 yfcH Epimerase family protein YfcH low > 87
Escherichia coli ECRC99 0.67 KEDOAH_10025 truB tRNA pseudouridine(55) synthase TruB 0.47 KEDOAH_05440 yfcH Epimerase family protein YfcH — —
Escherichia coli ECOR38 0.67 HEPCGN_17000 truB tRNA pseudouridine(55) synthase TruB 0.47 HEPCGN_21960 yfcH Epimerase family protein YfcH low > 88
Escherichia coli BL21 0.67 ECD_03033 tRNA pseudouridine synthase B: tRNA pseudouridine(55) synthase and putative tmRNA pseudouridine(342) synthase 0.47 ECD_02229 putative NAD-dependent nucleotide-sugar epimerase low > 61
Escherichia fergusonii Becca 0.67 EFB2_00657 tRNA pseudouridine synthase B 0.47 EFB2_01554 Epimerase family protein low > 86
Escherichia coli ECRC101 0.67 MCAODC_08645 truB tRNA pseudouridine(55) synthase TruB 0.47 MCAODC_13795 yfcH Epimerase family protein YfcH low > 87
Klebsiella pneumoniae MKP103 0.67 KDGMDA_05890 tRNA pseudouridine(55) synthase TruB 0.46 KDGMDA_27145 epimerase low > 95
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.67 GFF1500 tRNA pseudouridine synthase B (EC 4.2.1.70) 0.47 GFF1914 Cell division inhibitor low > 78
Escherichia coli ECOR27 0.67 NOLOHH_09925 truB tRNA pseudouridine(55) synthase TruB 0.47 NOLOHH_14375 yfcH Epimerase family protein YfcH low > 76
Escherichia coli ECRC62 0.67 BNILDI_01610 truB tRNA pseudouridine(55) synthase TruB 0.47 BNILDI_13295 yfcH Epimerase family protein YfcH low > 75
Enterobacter asburiae PDN3 0.66 EX28DRAFT_3217 tRNA pseudouridine(55) synthase 0.47 EX28DRAFT_0300 TIGR01777 family protein low > 76
Enterobacter sp. TBS_079 0.66 MPMX20_04071 tRNA pseudouridine synthase B 0.47 MPMX20_03239 Epimerase family protein low > 85
Erwinia tracheiphila SCR3 0.66 LU632_RS21050 truB tRNA pseudouridine(55) synthase TruB 0.46 LU632_RS07880 TIGR01777 family oxidoreductase low > 73
Rahnella sp. WP5 0.65 EX31_RS08530 tRNA pseudouridine(55) synthase TruB 0.46 EX31_RS19530 TIGR01777 family protein low > 89
Shewanella sp. ANA-3 0.64 Shewana3_1032 tRNA pseudouridine synthase B (RefSeq) 0.44 Shewana3_1542 hypothetical protein (RefSeq) low > 73
Shewanella loihica PV-4 0.64 Shew_2825 tRNA pseudouridine synthase B (RefSeq) 0.46 Shew_2400 hypothetical protein (RefSeq) low > 60
Shewanella amazonensis SB2B 0.63 Sama_0963 pseudouridylate synthase (RefSeq) 0.46 Sama_1488 hypothetical protein (RefSeq) low > 62
Kangiella aquimarina DSM 16071 0.50 B158DRAFT_0108 tRNA pseudouridine 55 synthase 0.38 B158DRAFT_1338 TIGR01777 family protein low > 40
Alteromonas macleodii MIT1002 0.50 MIT1002_01773 tRNA pseudouridine synthase B 0.48 MIT1002_01417 Epimerase family protein low > 70
Pseudomonas stutzeri RCH2 0.46 Psest_0983 tRNA pseudouridine 55 synthase 0.35 Psest_2394 TIGR01777 family protein — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.46 Psyr_4178 tRNA pseudouridine synthase B 0.40 Psyr_0966 Conserved hypothetical protein YfcH low > 86
Pseudomonas putida KT2440 0.46 PP_4710 tRNA pseudouridine 55 synthase 0.33 PP_0743 conserved protein with NAD(P)-binding Rossmann-fold domain low > 96
Pseudomonas syringae pv. syringae B728a 0.46 Psyr_4178 tRNA pseudouridine synthase B 0.40 Psyr_0966 Conserved hypothetical protein YfcH low > 86
Marinobacter adhaerens HP15 0.46 HP15_3065 tRNA pseudouridine synthase B 0.41 HP15_1503 nucleoside-diphosphate sugar epimerase low > 73
Pseudomonas sp. DMC3 0.46 GFF4990 tRNA pseudouridine synthase B 0.33 GFF4474 Epimerase family protein low > 89
Pseudomonas sp. BP01 0.46 JOY50_RS26845 truB tRNA pseudouridine(55) synthase TruB 0.33 JOY50_RS19540 TIGR01777 family oxidoreductase low > 84
Pseudomonas fluorescens GW456-L13 0.45 PfGW456L13_5086 tRNA pseudouridine synthase B (EC 4.2.1.70) 0.34 PfGW456L13_1594 Cell division inhibitor low > 87
Pseudomonas fluorescens FW300-N2E3 0.45 AO353_05550 pseudouridine synthase 0.36 AO353_14840 NAD-dependent dehydratase low > 101
Pseudomonas fluorescens FW300-N1B4 0.45 Pf1N1B4_1159 tRNA pseudouridine synthase B (EC 4.2.1.70) 0.32 Pf1N1B4_2931 Cell division inhibitor low > 87
Pseudomonas fluorescens FW300-N2E2 0.45 Pf6N2E2_3351 tRNA pseudouridine synthase B (EC 4.2.1.70) 0.34 Pf6N2E2_5232 Cell division inhibitor low > 103
Pseudomonas sp. RS175 0.45 PFR28_00092 tRNA pseudouridine synthase B 0.35 PFR28_03644 Epimerase family protein — —
Pseudomonas sp. S08-1 0.44 OH686_17155 tRNA pseudouridine(55) synthase 0.38 OH686_17890 Cell division inhibitor (YfcH in EC), contains epimerase/dehydratase and DUF1731 domains low > 80
Pseudomonas fluorescens FW300-N2C3 0.44 AO356_07400 pseudouridine synthase 0.35 AO356_16550 NAD-dependent dehydratase low > 104
Pseudomonas segetis P6 0.44 ACVTMO_RS05965 truB tRNA pseudouridine(55) synthase TruB 0.42 ACVTMO_RS06705 TIGR01777 family oxidoreductase low > 75
Pseudomonas sp. SVBP6 0.44 COO64_RS15160 truB tRNA pseudouridine(55) synthase TruB 0.40 COO64_RS03280 TIGR01777 family oxidoreductase low > 93
Pseudomonas simiae WCS417 0.44 PS417_23960 pseudouridine synthase 0.35 PS417_03690 NAD-dependent dehydratase — —
Pseudomonas fluorescens SBW25 0.44 PFLU_RS25800 tRNA pseudouridine(55) synthase TruB 0.37 PFLU_RS03740 TIGR01777 family protein low > 109
Pseudomonas fluorescens SBW25-INTG 0.44 PFLU_RS25800 tRNA pseudouridine(55) synthase TruB 0.37 PFLU_RS03740 TIGR01777 family protein low > 109
Pseudomonas lactucae CFBP13502 0.44 GEMAOFIL_04943 tRNA pseudouridine synthase B 0.36 GEMAOFIL_00944 Epimerase family protein low > 96
Pseudomonas orientalis W4I3 0.43 QF045_RS26215 tRNA pseudouridine(55) synthase TruB 0.38 QF045_RS06670 TIGR01777 family oxidoreductase low > 93
Pseudomonas aeruginosa PA14 0.43 IKLFDK_29890 tRNA pseudouridine(55) synthase TruB 0.36 IKLFDK_00215 epimerase low > 98
Pseudomonas aeruginosa MRSN321 0.43 DY961_RS09455 truB;go_function=pseudouridylate tRNA pseudouridine(55) synthase TruB 0.37 DY961_RS29110 TIGR01777 family oxidoreductase low > 100
Pseudomonas aeruginosa PUPa3 0.43 DQ20_RS52580 truB;go_function=pseudouridylate tRNA pseudouridine(55) synthase TruB 0.37 DQ20_RS55585 TIGR01777 family oxidoreductase low > 101
Acinetobacter baumannii LAC-4 0.40 RR41_RS01740 tRNA pseudouridine(55) synthase TruB 0.29 RR41_RS14765 TIGR01777 family oxidoreductase 0.35 45
Ralstonia sp. UNC404CL21Col 0.39 ABZR87_RS11220 tRNA pseudouridine(55) synthase TruB 0.38 ABZR87_RS21015 TIGR01777 family oxidoreductase low > 80
Acinetobacter radioresistens SK82 0.38 MPMX26_02778 tRNA pseudouridine synthase B 0.29 MPMX26_02400 Epimerase family protein low > 36
Xanthomonas campestris pv. campestris strain 8004 0.34 Xcc-8004.2004.1 tRNA pseudouridine synthase B (EC 4.2.1.70) 0.35 Xcc-8004.4939.1 hypothetical protein low > 74
Synechocystis sp000284455 PCC 6803 0.23 SGL_RS18050 tRNA pseudouridine(55) synthase TruB 0.35 SGL_RS06670 TIGR01777 family oxidoreductase low > 52
Synechococcus elongatus PCC 7942 0.20 Synpcc7942_1222 truB tRNA pseudouridine synthase B 0.36 Synpcc7942_2477 sulA hypothetical protein low > 38

Not shown: 37 genomes with orthologs for CSW01_03400 only; 9 genomes with orthologs for CSW01_05005 only