| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_12705 | | RNA polymerase-associated protein RapA | 1.0 | CSW01_03655 | | murein transglycosylase | 0.64 | 8 |
| Serratia liquefaciens MT49 | 0.67 | IAI46_03275 | | RNA polymerase-associated protein RapA | 0.29 | IAI46_02985 | | murein transglycosylase | low | > 87 |
| Dickeya dadantii 3937 | 0.65 | DDA3937_RS18235 | | RNA polymerase-associated protein RapA | 0.29 | DDA3937_RS18455 | | murein transglycosylase | low | > 74 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.65 | GFF183 | | RNA polymerase associated protein RapA (EC 3.6.1.-) | 0.31 | GFF1060 | | Soluble lytic murein transglycosylase precursor (EC 3.2.1.-) | low | > 78 |
| Rahnella sp. WP5 | 0.65 | EX31_RS03745 | | RNA polymerase-associated protein RapA | 0.28 | EX31_RS03985 | | murein transglycosylase | low | > 89 |
| Escherichia coli ECRC98 | 0.65 | JDDGAC_14395 | rapA | RNA polymerase-associated protein RapA | 0.30 | JDDGAC_14765 | sltY | murein transglycosylase | low | > 87 |
| Escherichia coli ECRC99 | 0.65 | KEDOAH_17355 | rapA | RNA polymerase-associated protein RapA | 0.30 | KEDOAH_16985 | sltY | murein transglycosylase | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.65 | OHPLBJKB_03599 | | RNA polymerase-associated protein RapA | 0.30 | OHPLBJKB_03669 | | Soluble lytic murein transglycosylase | low | > 74 |
| Enterobacter sp. TBS_079 | 0.65 | MPMX20_00753 | | RNA polymerase-associated protein RapA | 0.31 | MPMX20_00699 | | Soluble lytic murein transglycosylase | low | > 85 |
| Escherichia coli BW25113 | 0.65 | b0059 | hepA | ATP-dependent helicase HepA (NCBI) | 0.30 | b4392 | slt | soluble lytic murein transglycosylase (VIMSS) | low | > 76 |
| Escherichia coli ECRC100 | 0.65 | OKFHMN_10800 | rapA | RNA polymerase-associated protein RapA | 0.30 | OKFHMN_11170 | sltY | murein transglycosylase | low | > 79 |
| Escherichia coli ECRC101 | 0.65 | MCAODC_01315 | rapA | RNA polymerase-associated protein RapA | 0.30 | MCAODC_01685 | sltY | murein transglycosylase | low | > 87 |
| Escherichia coli BL21 | 0.65 | ECD_00061 | | RNA polymerase remodeling/recycling factor ATPase; RNA polymerase-associated, ATP-dependent RNA translocase | 0.30 | ECD_04268 | | lytic murein transglycosylase, soluble | low | > 61 |
| Escherichia coli Nissle 1917 | 0.65 | ECOLIN_RS00315 | | RNA polymerase-associated protein RapA | 0.30 | ECOLIN_RS25210 | | murein transglycosylase | low | > 55 |
| Escherichia coli ECRC102 | 0.65 | NIAGMN_08650 | rapA | RNA polymerase-associated protein RapA | 0.30 | NIAGMN_09020 | sltY | murein transglycosylase | low | > 80 |
| Escherichia coli ECRC62 | 0.65 | BNILDI_08460 | rapA | RNA polymerase-associated protein RapA | 0.30 | BNILDI_08095 | sltY | murein transglycosylase | low | > 75 |
| Escherichia coli ECOR27 | 0.65 | NOLOHH_03145 | rapA | RNA polymerase-associated protein RapA | 0.30 | NOLOHH_03500 | sltY | murein transglycosylase | low | > 76 |
| Dickeya dianthicola 67-19 | 0.65 | HGI48_RS18170 | | RNA polymerase-associated protein RapA | 0.29 | HGI48_RS18385 | | murein transglycosylase | low | > 71 |
| Klebsiella michiganensis M5al | 0.65 | BWI76_RS04570 | | RNA polymerase-associated protein RapA | 0.30 | BWI76_RS04185 | | murein transglycosylase | low | > 92 |
| Enterobacter asburiae PDN3 | 0.65 | EX28DRAFT_3651 | | Superfamily II DNA/RNA helicases, SNF2 family | 0.31 | EX28DRAFT_3602 | | Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) | low | > 76 |
| Klebsiella pneumoniae MKP103 | 0.65 | KDGMDA_12795 | | RNA polymerase-associated protein RapA | 0.30 | KDGMDA_12450 | | murein transglycosylase | low | > 95 |
| Escherichia coli ECOR38 | 0.64 | HEPCGN_08790 | rapA | RNA polymerase-associated protein RapA | 0.30 | HEPCGN_09175 | sltY | murein transglycosylase | low | > 88 |
| Escherichia fergusonii Becca | 0.64 | EFB2_03986 | | RNA polymerase-associated protein RapA | 0.30 | EFB2_04052 | | Soluble lytic murein transglycosylase | low | > 86 |
| Dickeya dianthicola ME23 | 0.64 | DZA65_RS19310 | | RNA polymerase-associated protein RapA | 0.29 | DZA65_RS19525 | | murein transglycosylase | low | > 75 |
| Pantoea agglomerans CFBP13505 P0401 | 0.64 | PagCFBP13505_RS12940 | | RNA polymerase-associated protein RapA | 0.30 | PagCFBP13505_RS21845 | | murein transglycosylase | low | > 74 |
| Pantoea sp. MT58 | 0.64 | IAI47_16055 | | RNA polymerase-associated protein RapA | 0.30 | IAI47_16260 | | murein transglycosylase | low | > 76 |
| Pectobacterium carotovorum WPP14 | 0.64 | HER17_RS02990 | | RNA polymerase-associated protein RapA | 0.29 | HER17_RS02750 | | murein transglycosylase | low | > 75 |
| Erwinia amylovora T8 | 0.63 | OLJFJH_01340 | | RNA polymerase-associated protein RapA | 0.29 | OLJFJH_01535 | | murein transglycosylase | low | > 58 |
| Erwinia tracheiphila HP pepo 2.2 | 0.62 | IJEDHG_06075 | | RNA polymerase-associated protein RapA | 0.29 | IJEDHG_06340 | sltY | murein transglycosylase | 0.60 | 21 |
| Erwinia tracheiphila SCR3 | 0.62 | LU632_RS02805 | rapA | RNA polymerase-associated protein RapA | 0.29 | LU632_RS02575 | sltY | murein transglycosylase | low | > 73 |
| Shewanella sp. ANA-3 | 0.61 | Shewana3_0574 | | ATP-dependent helicase HepA (RefSeq) | 0.26 | Shewana3_2236 | | lytic transglycosylase, catalytic (RefSeq) | low | > 73 |
| Shewanella oneidensis MR-1 | 0.61 | SO0575 | hepA | RNA polymerase-associated protein HepA (NCBI ptt file) | 0.26 | SO2040 | | soluble lytic murein transglycosylase, putative (NCBI ptt file) | low | > 76 |
| Shewanella amazonensis SB2B | 0.60 | Sama_3131 | | ATP-dependent helicase HepA (RefSeq) | 0.29 | Sama_1895 | | soluble lytic murein transglycosylase, putative (RefSeq) | low | > 62 |
| Shewanella loihica PV-4 | 0.60 | Shew_0457 | | ATP-dependent helicase HepA (RefSeq) | 0.29 | Shew_2125 | | lytic transglycosylase, catalytic (RefSeq) | low | > 60 |
| Pseudomonas sp. S08-1 | 0.47 | OH686_19955 | | RNA polymerase associated protein RapA | 0.21 | OH686_21900 | | Soluble lytic murein transglycosylase | low | > 80 |
| Pseudomonas sp. RS175 | 0.46 | PFR28_00612 | | RNA polymerase-associated protein RapA | 0.20 | PFR28_01106 | | Soluble lytic murein transglycosylase | low | > 88 |
| Pseudomonas sp. DMC3 | 0.46 | GFF2193 | | RNA polymerase-associated protein RapA | 0.20 | GFF1267 | | Soluble lytic murein transglycosylase | low | > 89 |
| Pseudomonas fluorescens FW300-N2C3 | 0.46 | AO356_04975 | | RNA polymerase-associated protein RapA | 0.20 | AO356_02350 | | lytic transglycosylase | low | > 104 |
| Pseudomonas fluorescens FW300-N2E2 | 0.46 | Pf6N2E2_2845 | | RNA polymerase associated protein RapA (EC 3.6.1.-) | 0.20 | Pf6N2E2_2294 | | Soluble lytic murein transglycosylase precursor (EC 3.2.1.-) | low | > 103 |
| Pseudomonas lactucae CFBP13502 | 0.46 | GEMAOFIL_01492 | | RNA polymerase-associated protein RapA | 0.20 | GEMAOFIL_01643 | | Soluble lytic murein transglycosylase | low | > 96 |
| Pseudomonas sp. SVBP6 | 0.46 | COO64_RS17145 | rapA | RNA polymerase-associated protein RapA | 0.20 | COO64_RS09370 | | transglycosylase SLT domain-containing protein | low | > 93 |
| Pseudomonas fluorescens FW300-N2E3 | 0.46 | AO353_17155 | | RNA polymerase-associated protein RapA | 0.20 | AO353_00530 | | lytic transglycosylase | low | > 101 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.46 | Psyr_3842 | | SNF2-related:Helicase, C-terminal:Type III restriction enzyme, res subunit | 0.20 | Psyr_3295 | | SLT | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.46 | Psyr_3842 | | SNF2-related:Helicase, C-terminal:Type III restriction enzyme, res subunit | 0.20 | Psyr_3295 | | SLT | low | > 86 |
| Pseudomonas fluorescens FW300-N1B4 | 0.46 | Pf1N1B4_3224 | | RNA polymerase associated protein RapA (EC 3.6.1.-) | 0.19 | Pf1N1B4_3898 | | Soluble lytic murein transglycosylase precursor (EC 3.2.1.-) | 0.29 | 21 |
| Pseudomonas segetis P6 | 0.46 | MPMX49_03288 | | RNA polymerase-associated protein RapA | 0.21 | MPMX49_03001 | | Soluble lytic murein transglycosylase | low | > 75 |
| Pseudomonas fluorescens GW456-L13 | 0.46 | PfGW456L13_4599 | | RNA polymerase associated protein RapA (EC 3.6.1.-) | 0.20 | PfGW456L13_4045 | | Soluble lytic murein transglycosylase precursor (EC 3.2.1.-) | low | > 87 |
| Pseudomonas orientalis W4I3 | 0.46 | QF045_RS09435 | | RNA polymerase-associated protein RapA | 0.19 | QF045_RS10195 | | transglycosylase SLT domain-containing protein | low | > 93 |
| Pseudomonas fluorescens SBW25 | 0.46 | PFLU_RS06675 | | RNA polymerase-associated protein RapA | 0.19 | PFLU_RS07630 | | transglycosylase SLT domain-containing protein | low | > 109 |
| Pseudomonas stutzeri RCH2 | 0.46 | Psest_1327 | | Superfamily II DNA/RNA helicases, SNF2 family | 0.21 | Psest_1844 | | Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) | low | > 67 |
| Pseudomonas fluorescens SBW25-INTG | 0.46 | PFLU_RS06675 | | RNA polymerase-associated protein RapA | 0.19 | PFLU_RS07630 | | transglycosylase SLT domain-containing protein | low | > 109 |
| Pseudomonas aeruginosa PUPa3 | 0.46 | DQ20_RS40690 | rapA;go_function=ATP | RNA polymerase-associated protein RapA | 0.19 | DQ20_RS33715 | slt;inference=COORDINATES | lytic transglycosylase Slt | low | > 101 |
| Pseudomonas putida KT2440 | 0.46 | PP_1145 | | RNA polymerase-associated protein RapA | 0.20 | PP_2130 | | putative Soluble lytic transglycosylase | low | > 96 |
| Pseudomonas aeruginosa MRSN321 | 0.46 | DY961_RS00330 | rapA;go_function=ATP | RNA polymerase-associated protein RapA | 0.19 | DY961_RS01860 | slt;inference=COORDINATES | lytic transglycosylase Slt | low | > 100 |
| Pseudomonas aeruginosa PA14 | 0.46 | IKLFDK_16965 | | RNA polymerase-associated protein RapA | 0.19 | IKLFDK_15365 | | lytic transglycosylase Slt | low | > 98 |
| Pseudomonas sp. BP01 | 0.46 | JOY50_RS24235 | rapA | RNA polymerase-associated protein RapA | 0.19 | JOY50_RS25015 | | transglycosylase SLT domain-containing protein | low | > 84 |
| Pseudomonas simiae WCS417 | 0.45 | PS417_06645 | | RNA polymerase-associated protein RapA | 0.20 | PS417_07550 | | lytic transglycosylase | low | > 88 |
| Alteromonas macleodii MIT1002 | 0.44 | MIT1002_00659 | | RNA polymerase-associated protein RapA | 0.17 | MIT1002_00576 | | Soluble lytic murein transglycosylase precursor | low | > 70 |
| Acinetobacter baumannii LAC-4 | 0.38 | RR41_RS05200 | | RNA polymerase-associated protein RapA | 0.10 | RR41_RS02455 | | lytic transglycosylase domain-containing protein | low | > 55 |
| Acinetobacter radioresistens SK82 | 0.37 | MPMX26_01027 | | RNA polymerase-associated protein RapA | 0.11 | MPMX26_02666 | | Soluble lytic murein transglycosylase | low | > 36 |
| Rhodanobacter sp. FW510-T8 | 0.32 | OKGIIK_09865 | rapA | RNA polymerase-associated protein RapA | 0.15 | OKGIIK_16395 | | Lytic transglycosylase | low | > 53 |
| Rhodanobacter denitrificans FW104-10B01 | 0.31 | LRK54_RS02885 | | RNA polymerase-associated protein RapA | 0.16 | LRK54_RS07245 | | transglycosylase SLT domain-containing protein | low | > 59 |
| Rhodanobacter denitrificans MT42 | 0.31 | LRK55_RS02635 | | RNA polymerase-associated protein RapA | 0.15 | LRK55_RS06980 | | transglycosylase SLT domain-containing protein | low | > 63 |
| Rhodanobacter sp000427505 FW510-R12 | 0.31 | LRK53_RS07105 | | RNA polymerase-associated protein RapA | 0.15 | LRK53_RS01145 | | transglycosylase SLT domain-containing protein | low | > 59 |
| Dyella japonica UNC79MFTsu3.2 | 0.31 | ABZR86_RS09245 | | RNA polymerase-associated protein RapA | 0.14 | ABZR86_RS12745 | | transglycosylase SLT domain-containing protein | low | > 74 |
Not shown: 1 genomes with orthologs for CSW01_12705 only; 17 genomes with orthologs for CSW01_03655 only