| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_03695 | | ribosomal large subunit pseudouridine synthase D | 1.0 | CSW01_01485 | | transcriptional regulator | 0.92 | 3 |
| Pectobacterium carotovorum WPP14 | 0.71 | HER17_RS05400 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.52 | HER17_RS01450 | | gluconate operon transcriptional repressor GntR | low | > 75 |
| Escherichia coli ECOR27 | 0.71 | NOLOHH_12925 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.51 | NOLOHH_08635 | gntR | gluconate operon transcriptional repressor GntR | low | > 75 |
| Escherichia coli ECRC62 | 0.71 | BNILDI_11730 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.52 | BNILDI_02870 | gntR | gluconate operon transcriptional repressor GntR | low | > 75 |
| Escherichia coli ECOR38 | 0.70 | HEPCGN_20375 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.52 | HEPCGN_15660 | gntR | gluconate operon transcriptional repressor GntR | low | > 88 |
| Erwinia amylovora T8 | 0.70 | OLJFJH_09725 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.56 | OLJFJH_04280 | | gluconate operon transcriptional repressor GntR | low | > 58 |
| Dickeya dadantii 3937 | 0.70 | DDA3937_RS16110 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.55 | DDA3937_RS19785 | | gluconate operon transcriptional repressor GntR | low | > 74 |
| Escherichia coli BL21 | 0.70 | ECD_02484 | | 23S rRNA pseudouridine(1911,1915,1917) synthase | 0.51 | ECD_03289 | | d-gluconate inducible gluconate regulon transcriptional repressor | low | > 61 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.70 | OHPLBJKB_01112 | | Ribosomal large subunit pseudouridine synthase D | 0.52 | OHPLBJKB_00264 | | HTH-type transcriptional regulator GntR | low | > 74 |
| Escherichia coli BW25113 | 0.70 | b2594 | rluD | 23S rRNA pseudouridine synthase (NCBI) | 0.52 | b3438 | gntR | DNA-binding transcriptional repressor (NCBI) | — | — |
| Pantoea sp. MT58 | 0.70 | IAI47_04425 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.52 | IAI47_01650 | | gluconate operon transcriptional repressor GntR | low | > 76 |
| Escherichia fergusonii Becca | 0.70 | EFB2_01296 | | Ribosomal large subunit pseudouridine synthase D | 0.52 | EFB2_00382 | | HTH-type transcriptional regulator GntR | low | > 86 |
| Serratia liquefaciens MT49 | 0.70 | IAI46_03985 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.54 | IAI46_23965 | | gluconate operon transcriptional repressor GntR | low | > 87 |
| Escherichia coli Nissle 1917 | 0.70 | ECOLIN_RS14675 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.52 | ECOLIN_RS19675 | | gluconate operon transcriptional repressor GntR | low | > 55 |
| Escherichia coli ECRC100 | 0.70 | OKFHMN_21250 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.52 | OKFHMN_16835 | gntR | gluconate operon transcriptional repressor GntR | low | > 79 |
| Escherichia coli ECRC98 | 0.70 | JDDGAC_24915 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.52 | JDDGAC_20465 | gntR | gluconate operon transcriptional repressor GntR | low | > 87 |
| Escherichia coli ECRC101 | 0.70 | MCAODC_11780 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.52 | MCAODC_07365 | gntR | gluconate operon transcriptional repressor GntR | low | > 87 |
| Pantoea agglomerans CFBP13505 P0401 | 0.70 | PagCFBP13516_RS04800 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.50 | PagCFBP13516_RS01635 | gntR | gluconate operon transcriptional repressor GntR | low | > 80 |
| Escherichia coli ECRC102 | 0.70 | NIAGMN_19020 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.52 | NIAGMN_14605 | gntR | gluconate operon transcriptional repressor GntR | low | > 80 |
| Escherichia coli ECRC99 | 0.70 | KEDOAH_06970 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.52 | KEDOAH_11305 | gntR | gluconate operon transcriptional repressor GntR | — | — |
| Dickeya dianthicola ME23 | 0.70 | DZA65_RS17330 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.55 | DZA65_RS20970 | | gluconate operon transcriptional repressor GntR | low | > 75 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.70 | GFF4182 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | 0.49 | GFF570 | | Gluconate utilization system Gnt-I transcriptional repressor | low | > 78 |
| Enterobacter sp. TBS_079 | 0.70 | MPMX20_03463 | | Ribosomal large subunit pseudouridine synthase D | 0.52 | MPMX20_04319 | | HTH-type transcriptional regulator GntR | low | > 85 |
| Enterobacter asburiae PDN3 | 0.70 | EX28DRAFT_2695 | | pseudouridine synthase, RluA family | 0.51 | EX28DRAFT_4274 | | transcriptional regulator, LacI family | low | > 76 |
| Dickeya dianthicola 67-19 | 0.70 | HGI48_RS16235 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.55 | HGI48_RS19900 | | gluconate operon transcriptional repressor GntR | low | > 71 |
| Klebsiella pneumoniae MKP103 | 0.70 | KDGMDA_02140 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.51 | KDGMDA_07120 | | gluconate operon transcriptional repressor GntR | low | > 94 |
| Klebsiella pneumoniae MRSN742743 | 0.70 | GJGHJB_01188 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.51 | GJGHJB_00314 | gntR | gluconate operon transcriptional repressor GntR | low | > 83 |
| Rahnella sp. WP5 | 0.69 | EX31_RS07570 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.54 | EX31_RS05060 | | gluconate operon transcriptional repressor GntR | low | > 89 |
| Klebsiella michiganensis M5al | 0.69 | BWI76_RS21450 | | 23S rRNA pseudouridine(1911/1915/1917) synthase | 0.51 | BWI76_RS26245 | | transcriptional regulator | low | > 92 |
| Erwinia tracheiphila SCR3 | 0.68 | LU632_RS16945 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.53 | LU632_RS19160 | gntR | gluconate operon transcriptional repressor GntR | low | > 73 |
| Erwinia tracheiphila HP pepo 2.2 | 0.68 | IJEDHG_26870 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.54 | IJEDHG_08040 | gntR | gluconate operon transcriptional repressor GntR | low | > 61 |
| Alteromonas macleodii MIT1002 | 0.59 | MIT1002_02679 | | Ribosomal large subunit pseudouridine synthase D | 0.31 | MIT1002_03475 | | Gluconate utilization system GNT-I transcriptional repressor | low | > 70 |
| Pseudomonas fluorescens FW300-N2C3 | 0.55 | AO356_15925 | | ribosomal large subunit pseudouridine synthase D | 0.34 | AO356_05065 | | LacI family transcriptional regulator | low | > 104 |
| Pseudomonas protegens RBAN4 | 0.55 | FABNJH_26810 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.33 | FABNJH_23640 | | Gluconate utilization system GNT-I transcriptional repressor | — | — |
| Pseudomonas sp. DMC3 | 0.54 | GFF4004 | | Ribosomal large subunit pseudouridine synthase D | 0.33 | GFF5268 | | HTH-type transcriptional regulator GntR | low | > 89 |
| Pseudomonas orientalis W4I3 | 0.54 | QF045_RS06805 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.34 | QF045_RS24095 | | LacI family DNA-binding transcriptional regulator | low | > 93 |
| Pseudomonas fluorescens FW300-N2E3 | 0.54 | AO353_14220 | | ribosomal large subunit pseudouridine synthase D | 0.33 | AO353_03255 | | LacI family transcriptional regulator | low | > 101 |
| Pseudomonas lactucae CFBP13502 | 0.54 | GEMAOFIL_00969 | | Ribosomal large subunit pseudouridine synthase D | 0.34 | GEMAOFIL_04536 | | HTH-type transcriptional regulator GntR | low | > 96 |
| Pseudomonas fluorescens GW456-L13 | 0.54 | PfGW456L13_1493 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | 0.34 | PfGW456L13_1925 | | Gluconate utilization system Gnt-I transcriptional repressor | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.54 | PFLU_RS03870 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.34 | PFLU_RS23595 | | LacI family DNA-binding transcriptional regulator | low | > 109 |
| Pseudomonas fluorescens FW300-N2E2 | 0.54 | Pf6N2E2_5127 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | 0.34 | Pf6N2E2_2865 | | Gluconate utilization system Gnt-I transcriptional repressor | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.54 | Pf1N1B4_2822 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | 0.35 | Pf1N1B4_558 | | Gluconate utilization system Gnt-I transcriptional repressor | — | — |
| Pseudomonas fluorescens SBW25 | 0.54 | PFLU_RS03870 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.34 | PFLU_RS23595 | | LacI family DNA-binding transcriptional regulator | low | > 109 |
| Pseudomonas simiae WCS417 | 0.54 | PS417_03820 | | ribosomal large subunit pseudouridine synthase D | 0.33 | PS417_21990 | | LacI family transcriptional regulator | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.54 | Psyr_0726 | | ribosomal large subunit pseudouridine synthase D | 0.32 | Psyr_3336 | | transcriptional regulator, LacI family | low | > 86 |
| Pseudomonas sp. RS175 | 0.54 | PFR28_03748 | | Ribosomal large subunit pseudouridine synthase D | 0.34 | PFR28_00593 | | HTH-type transcriptional regulator GntR | low | > 88 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.54 | Psyr_0726 | | ribosomal large subunit pseudouridine synthase D | 0.32 | Psyr_3336 | | transcriptional regulator, LacI family | low | > 86 |
| Pseudomonas sp. BP01 | 0.54 | JOY50_RS27130 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.31 | JOY50_RS23605 | | LacI family DNA-binding transcriptional regulator | low | > 84 |
| Pseudomonas sp. SVBP6 | 0.54 | COO64_RS11055 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.34 | COO64_RS25590 | | LacI family DNA-binding transcriptional regulator | low | > 91 |
| Pseudomonas segetis P6 | 0.53 | ACVTMO_RS19440 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.33 | ACVTMO_RS11810 | gntR | HTH-type transcriptional regulator GntR | low | > 75 |
| Pseudomonas putida KT2440 | 0.53 | PP_0623 | | 23S rRNA pseudouridine(1911,1915,1917) synthase | 0.31 | PP_3415 | | Transcriptional regulator, LacI family | — | — |
| Pseudomonas aeruginosa MRSN321 | 0.51 | PFGADD_04751 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.36 | PFGADD_02780 | gntR | LacI family DNA-binding transcriptional regulator GntR | low | > 99 |
| Pseudomonas aeruginosa PA14 | 0.51 | IKLFDK_00810 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.36 | IKLFDK_11375 | | LacI family DNA-binding transcriptional regulator GntR | low | > 98 |
| Pseudomonas aeruginosa PUPa3 | 0.51 | NPBIFN_04812 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.36 | NPBIFN_02811 | gntR | LacI family DNA-binding transcriptional regulator GntR | low | > 101 |
| Ralstonia solanacearum PSI07 | 0.39 | RPSI07_RS15970 | | RluA family pseudouridine synthase | 0.26 | RPSI07_RS07575 | | LacI family DNA-binding transcriptional regulator | low | > 81 |
| Ralstonia solanacearum GMI1000 | 0.39 | RS_RS08205 | | RluA family pseudouridine synthase | 0.26 | RS_RS24865 | | LacI family DNA-binding transcriptional regulator | low | > 80 |
| Ralstonia sp. UNC404CL21Col | 0.38 | ABZR87_RS13315 | | RluA family pseudouridine synthase | 0.26 | ABZR87_RS18255 | | LacI family DNA-binding transcriptional regulator | low | > 80 |
| Xanthobacter sp. DMC5 | 0.36 | GFF2508 | | Ribosomal large subunit pseudouridine synthase D | 0.31 | GFF1533 | | HTH-type transcriptional regulator GntR | — | — |
| Rhizobium sp. OAE497 | 0.36 | ABIE40_RS14790 | | RluA family pseudouridine synthase | 0.25 | ABIE40_RS04445 | | LacI family DNA-binding transcriptional regulator | low | > 107 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.35 | GFF4870 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | 0.30 | GFF5509 | | Gluconate utilization system Gnt-I transcriptional repressor | low | > 90 |
| Herbaspirillum seropedicae SmR1 | 0.35 | HSERO_RS15070 | | ribosomal large subunit pseudouridine synthase D | 0.34 | HSERO_RS05460 | | LacI family transcription regulator | low | > 78 |
| Sinorhizobium meliloti 1021 | 0.33 | SMc00647 | | ribosomal large subunit pseudouridine synthase | 0.29 | SM_b20667 | | LacI family transcriptional regulator | low | > 103 |
| Azospirillum sp. SherDot2 | 0.33 | MPMX19_05442 | | Ribosomal large subunit pseudouridine synthase D | 0.29 | MPMX19_05332 | | HTH-type transcriptional regulator GntR | low | > 112 |
| Agrobacterium fabrum C58 | 0.33 | Atu2443 | | ribosomal large subunit pseudouridine synthase, RluD subfamily | 0.28 | Atu4685 | | LacI family transcriptional regulator | — | — |
| Castellaniella sp019104865 MT123 | 0.33 | ABCV34_RS01885 | | RluA family pseudouridine synthase | 0.26 | ABCV34_RS12285 | | LacI family DNA-binding transcriptional regulator | low | > 48 |
| Acidovorax sp. GW101-3H11 | 0.32 | Ac3H11_1787 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | 0.29 | Ac3H11_3230 | | Gluconate utilization system Gnt-I transcriptional repressor | low | > 79 |
| Phaeobacter inhibens DSM 17395 | 0.32 | PGA1_c09000 | | ribosomal large subunit pseudouridine synthase D | 0.28 | PGA1_c33870 | | putative HTH-type transcriptional regulator GntR | low | > 62 |
| Dinoroseobacter shibae DFL-12 | 0.28 | Dshi_2610 | | pseudouridine synthase, RluA family (RefSeq) | 0.27 | Dshi_3322 | | transcriptional regulator, LacI family (RefSeq) | low | > 64 |
| Variovorax sp. OAS795 | 0.28 | ABID97_RS14190 | | RluA family pseudouridine synthase | 0.29 | ABID97_RS01205 | | LacI family DNA-binding transcriptional regulator | low | > 91 |
Not shown: 43 genomes with orthologs for CSW01_03695 only; 6 genomes with orthologs for CSW01_01485 only