Conservation of cofitness between CSW01_07190 and CSW01_01445 in Vibrio cholerae E7946 ATCC 55056

54 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_07190 transcriptional regulator FNR 1.0 CSW01_01445 lysine decarboxylase 0.90 3
Rahnella sp. WP5 0.86 EX31_RS07200 FNR family transcription factor 0.71 EX31_RS12950 lysine decarboxylase LdcC low > 89
Pantoea agglomerans CFBP13505 P0401 0.86 PagCFBP13505_RS06575 fumarate/nitrate reduction transcriptional regulator Fnr 0.70 PagCFBP13505_RS13560 lysine decarboxylase LdcC low > 74
Serratia liquefaciens MT49 0.86 IAI46_13260 FNR family transcription factor 0.77 IAI46_20145 lysine decarboxylase CadA low > 86
Pantoea sp. MT58 0.85 IAI47_09580 FNR family transcription factor 0.70 IAI47_15445 lysine decarboxylase LdcC low > 76
Escherichia coli ECRC102 0.85 NIAGMN_26410 fnr fumarate/nitrate reduction transcriptional regulator Fnr 0.78 NIAGMN_10320 cadA lysine decarboxylase CadA 0.57 18
Escherichia coli ECRC100 0.85 OKFHMN_02240 fnr fumarate/nitrate reduction transcriptional regulator Fnr 0.78 OKFHMN_12475 cadA lysine decarboxylase CadA low > 79
Escherichia coli ECRC98 0.85 JDDGAC_04785 fnr fumarate/nitrate reduction transcriptional regulator Fnr 0.78 JDDGAC_16110 cadA lysine decarboxylase CadA low > 87
Escherichia coli ECOR27 0.85 NOLOHH_19940 fnr fumarate/nitrate reduction transcriptional regulator Fnr 0.78 NOLOHH_04740 cadA lysine decarboxylase CadA low > 76
Escherichia fergusonii Becca 0.85 EFB2_02593 Fumarate and nitrate reduction regulatory protein 0.78 EFB2_04451 Inducible lysine decarboxylase low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.85 OHPLBJKB_02348 Fumarate and nitrate reduction regulatory protein 0.78 OHPLBJKB_03912 Inducible lysine decarboxylase low > 74
Escherichia coli BW25113 0.85 b1334 fnr DNA-binding transcriptional dual regulator, global regulator of anaerobic growth (NCBI) 0.78 b4131 cadA lysine decarboxylase 1 (NCBI) 0.45 16
Escherichia coli ECRC101 0.85 MCAODC_16030 fnr fumarate/nitrate reduction transcriptional regulator Fnr 0.78 MCAODC_02985 cadA lysine decarboxylase CadA low > 88
Escherichia coli ECOR38 0.85 HEPCGN_25925 fnr fumarate/nitrate reduction transcriptional regulator Fnr 0.78 HEPCGN_11110 cadA lysine decarboxylase CadA low > 88
Escherichia coli ECRC62 0.85 BNILDI_18090 fnr fumarate/nitrate reduction transcriptional regulator Fnr 0.78 BNILDI_06750 cadA lysine decarboxylase CadA low > 75
Escherichia coli Nissle 1917 0.85 ECOLIN_RS08005 fumarate/nitrate reduction transcriptional regulator Fnr 0.78 ECOLIN_RS23905 lysine decarboxylase CadA low > 55
Escherichia coli ECRC99 0.85 KEDOAH_26530 fnr fumarate/nitrate reduction transcriptional regulator Fnr 0.78 KEDOAH_15690 cadA lysine decarboxylase CadA — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.85 GFF2656 Fumarate and nitrate reduction regulatory protein 0.77 GFF2452 Lysine decarboxylase, inducible (EC 4.1.1.18) low > 78
Klebsiella michiganensis M5al 0.85 BWI76_RS16185 transcriptional regulator FNR 0.78 BWI76_RS07195 lysine decarboxylase CadA — —
Enterobacter sp. TBS_079 0.85 MPMX20_02035 Fumarate and nitrate reduction regulatory protein 0.71 MPMX20_00870 Constitutive lysine decarboxylase low > 85
Klebsiella pneumoniae MKP103 0.85 KDGMDA_21005 fumarate/nitrate reduction transcriptional regulator Fnr 0.78 KDGMDA_15475 lysine decarboxylase CadA low > 95
Enterobacter asburiae PDN3 0.84 EX28DRAFT_1540 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases 0.71 EX28DRAFT_3774 Arginine/lysine/ornithine decarboxylases low > 76
Erwinia amylovora T8 0.83 OLJFJH_13925 transcriptional regulator FNR 0.70 OLJFJH_00545 lysine decarboxylase LdcC low > 58
Kangiella aquimarina DSM 16071 0.56 B158DRAFT_1982 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases 0.15 B158DRAFT_0656 Arginine/lysine/ornithine decarboxylases low > 40
Pseudomonas segetis P6 0.54 MPMX49_02303 Transcriptional activator protein Anr 0.38 MPMX49_02802 Biodegradative arginine decarboxylase low > 75
Pseudomonas fluorescens GW456-L13 0.54 PfGW456L13_4071 Fumarate and nitrate reduction regulatory protein 0.38 PfGW456L13_3336 Lysine decarboxylase, inducible (EC 4.1.1.18) low > 87
Pseudomonas fluorescens SBW25 0.53 PFLU_RS22395 fumarate/nitrate reduction transcriptional regulator Fnr 0.38 PFLU_RS12930 lysine decarboxylase low > 109
Pseudomonas lactucae CFBP13502 0.53 GEMAOFIL_04302 Transcriptional activator protein Anr 0.38 GEMAOFIL_02693 Biodegradative arginine decarboxylase — —
Pseudomonas fluorescens SBW25-INTG 0.53 PFLU_RS22395 fumarate/nitrate reduction transcriptional regulator Fnr 0.38 PFLU_RS12930 lysine decarboxylase low > 109
Pseudomonas fluorescens FW300-N1B4 0.53 Pf1N1B4_3867 Fumarate and nitrate reduction regulatory protein 0.38 Pf1N1B4_4600 Lysine decarboxylase, inducible (EC 4.1.1.18) — —
Pseudomonas simiae WCS417 0.53 PS417_20785 transcriptional regulator 0.38 PS417_12240 lysine decarboxylase low > 88
Pseudomonas aeruginosa PA14 0.53 IKLFDK_07375 transcriptional regulator Anr 0.39 IKLFDK_08840 lysine-specific pyridoxal 5'-phosphate-dependent carboxylase LdcA low > 100
Pseudomonas fluorescens FW300-N2E3 0.53 AO353_00660 transcriptional regulator 0.38 AO353_23560 lysine decarboxylase low > 101
Pseudomonas sp. S08-1 0.53 OH686_02245 Fumarate and nitrate reduction regulatory protein 0.39 OH686_03560 Lysine decarboxylase, inducible low > 80
Pseudomonas stutzeri RCH2 0.53 Psest_2538 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases 0.38 Psest_2075 Arginine/lysine/ornithine decarboxylases low > 67
Pseudomonas sp. SVBP6 0.52 COO64_RS18640 fnrA Crp/Fnr family transcriptional regulator FnrA 0.37 COO64_RS19270 Orn/Lys/Arg decarboxylase N-terminal domain-containing protein low > 93
Pseudomonas putida KT2440 0.52 PP_4265 DNA-binding transcriptional dual regulator 0.37 PP_4140 lysine decarboxylase low > 96
Pseudomonas sp. BP01 0.52 JOY50_RS00125 fnrA Crp/Fnr family transcriptional regulator FnrA 0.36 JOY50_RS07070 Orn/Lys/Arg decarboxylase N-terminal domain-containing protein low > 84
Herbaspirillum seropedicae SmR1 0.41 HSERO_RS16020 transcriptional regulator 0.34 HSERO_RS17280 lysine decarboxylase — —
Dechlorosoma suillum PS 0.40 Dsui_1646 cAMP-binding protein 0.34 Dsui_1245 arginine/lysine/ornithine decarboxylase — —
Cupriavidus basilensis FW507-4G11 0.40 RR42_RS12875 transcriptional regulator 0.34 RR42_RS15940 lysine decarboxylase — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.39 GFF4142 transcriptional regulator, Crp/Fnr family 0.34 GFF4333 Arginine decarboxylase (EC 4.1.1.19); Ornithine decarboxylase (EC 4.1.1.17); Lysine decarboxylase (EC 4.1.1.18) low > 90
Ralstonia sp. UNC404CL21Col 0.39 ABZR87_RS11180 fumarate/nitrate reduction transcriptional regulator Fnr 0.34 ABZR87_RS16180 arginine/lysine/ornithine decarboxylase low > 80
Methylophilus sp. DMC18 0.38 GFF1089 Transcriptional activator protein Anr 0.34 GFF1062 Biodegradative arginine decarboxylase — —
Ralstonia solanacearum UW163 0.38 UW163_RS13110 fumarate/nitrate reduction transcriptional regulator Fnr 0.34 UW163_RS09345 lysine decarboxylase — —
Ralstonia solanacearum PSI07 0.38 RPSI07_RS17705 fumarate/nitrate reduction transcriptional regulator Fnr 0.34 RPSI07_RS13045 lysine decarboxylase — —
Burkholderia phytofirmans PsJN 0.38 BPHYT_RS31300 Crp/Fnr family transcriptional regulator 0.33 BPHYT_RS04980 lysine decarboxylase — —
Ralstonia solanacearum IBSBF1503 0.38 RALBFv3_RS15650 fumarate/nitrate reduction transcriptional regulator Fnr 0.34 RALBFv3_RS04325 lysine decarboxylase — —
Acidovorax sp. GW101-3H11 0.38 Ac3H11_975 transcriptional regulator, Crp/Fnr family 0.33 Ac3H11_2914 Arginine decarboxylase (EC 4.1.1.19); Ornithine decarboxylase (EC 4.1.1.17); Lysine decarboxylase (EC 4.1.1.18) — —
Ralstonia solanacearum GMI1000 0.38 RS_RS06430 fumarate/nitrate reduction transcriptional regulator Fnr 0.34 RS_RS11875 lysine decarboxylase — —
Paraburkholderia sabiae LMG 24235 0.38 QEN71_RS17975 helix-turn-helix domain-containing protein 0.34 QEN71_RS25000 arginine/lysine/ornithine decarboxylase — —
Paraburkholderia bryophila 376MFSha3.1 0.36 H281DRAFT_01640 transcriptional regulator, Crp/Fnr family 0.33 H281DRAFT_00160 ornithine decarboxylase — —
Paraburkholderia graminis OAS925 0.35 ABIE53_004332 CRP/FNR family transcriptional regulator 0.33 ABIE53_001270 arginine decarboxylase — —
Castellaniella sp019104865 MT123 0.34 ABCV34_RS06835 helix-turn-helix domain-containing protein 0.33 ABCV34_RS08900 arginine/lysine/ornithine decarboxylase — —
Variovorax sp. SCN45 0.22 GFF6947 transcriptional regulator, Crp/Fnr family 0.33 GFF232 Arginine decarboxylase (EC 4.1.1.19); Ornithine decarboxylase (EC 4.1.1.17); Lysine decarboxylase (EC 4.1.1.18) low > 127

Not shown: 38 genomes with orthologs for CSW01_07190 only; 4 genomes with orthologs for CSW01_01445 only