Conservation of cofitness between CSW01_04620 and CSW01_00065 in Vibrio cholerae E7946 ATCC 55056

65 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_04620 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 1.0 CSW01_00065 DNA replication and repair protein RecF 0.51 6
Klebsiella pneumoniae MKP103 0.66 KDGMDA_03395 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.54 KDGMDA_08670 DNA replication/repair protein RecF low > 94
Klebsiella pneumoniae MRSN742743 0.66 GJGHJB_00963 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.54 GJGHJB_00004 recF DNA replication/repair protein RecF 0.31 6
Klebsiella michiganensis M5al 0.64 BWI76_RS22865 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.54 BWI76_RS00010 DNA replication and repair protein RecF low > 92
Escherichia coli ECOR38 0.63 HEPCGN_19445 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.55 HEPCGN_13720 recF DNA replication/repair protein RecF low > 88
Escherichia coli ECRC101 0.63 MCAODC_10715 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.55 MCAODC_05535 recF DNA replication/repair protein RecF low > 87
Escherichia coli ECRC99 0.63 KEDOAH_07940 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.55 KEDOAH_13125 recF DNA replication/repair protein RecF — —
Escherichia coli ECRC98 0.63 JDDGAC_23855 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.55 JDDGAC_18645 recF DNA replication/repair protein RecF low > 87
Escherichia coli ECRC102 0.63 NIAGMN_17960 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.55 NIAGMN_12780 recF DNA replication/repair protein RecF low > 80
Escherichia coli ECRC100 0.63 OKFHMN_20190 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.55 OKFHMN_15025 recF DNA replication/repair protein RecF low > 79
Escherichia fergusonii Becca 0.62 EFB2_01123 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.55 EFB2_00003 DNA replication and repair protein RecF low > 86
Escherichia coli Nissle 1917 0.62 ECOLIN_RS15580 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.55 ECOLIN_RS21310 DNA replication/repair protein RecF low > 55
Escherichia coli ECRC62 0.62 BNILDI_10575 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.55 BNILDI_04365 recF DNA replication/repair protein RecF low > 75
Escherichia coli ECOR27 0.62 NOLOHH_12070 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.55 NOLOHH_07165 recF DNA replication/repair protein RecF low > 75
Escherichia coli BL21 0.62 ECD_02639 7-cyano-7-deazaguanine reductase (NADPH-dependent) 0.55 ECD_03583 gap repair protein low > 61
Escherichia coli HS(pFamp)R (ATCC 700891) 0.62 OHPLBJKB_00937 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.55 OHPLBJKB_00003 DNA replication and repair protein RecF low > 74
Escherichia coli BW25113 0.62 b2794 yqcD hypothetical protein (NCBI) 0.55 b3700 recF recombination protein F (NCBI) low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.62 GFF4849 NADPH dependent preQ0 reductase (EC 1.7.1.13) 0.54 GFF1756 DNA recombination and repair protein RecF low > 78
Erwinia amylovora T8 0.62 OLJFJH_09195 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.57 OLJFJH_05150 DNA replication/repair protein RecF low > 58
Enterobacter asburiae PDN3 0.61 EX28DRAFT_2876 7-cyano-7-deazaguanine reductase 0.54 EX28DRAFT_3987 DNA replication and repair protein RecF low > 76
Rahnella sp. WP5 0.61 EX31_RS13085 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.55 EX31_RS05975 DNA replication/repair protein RecF low > 89
Pantoea agglomerans CFBP13505 P0401 0.61 PagCFBP13516_RS04320 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.56 PagCFBP13516_RS00015 recF DNA replication/repair protein RecF low > 80
Pantoea sp. MT58 0.60 IAI47_04050 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.56 IAI47_00015 DNA replication/repair protein RecF low > 76
Enterobacter sp. TBS_079 0.60 MPMX20_03664 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.54 MPMX20_00003 DNA replication and repair protein RecF low > 85
Erwinia tracheiphila HP pepo 2.2 0.60 IJEDHG_17300 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.56 IJEDHG_09800 recF DNA replication/repair protein RecF low > 61
Erwinia tracheiphila SCR3 0.60 LU632_RS06280 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.55 LU632_RS00015 recF DNA replication/repair protein RecF low > 73
Pectobacterium carotovorum WPP14 0.59 HER17_RS16390 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.55 HER17_RS00015 DNA replication/repair protein RecF low > 75
Shewanella sp. ANA-3 0.59 Shewana3_2835 queF 7-cyano-7-deazaguanine reductase (RefSeq) 0.45 Shewana3_0011 recF recombination protein F (RefSeq) low > 73
Shewanella oneidensis MR-1 0.59 SO1608 conserved hypothetical protein (NCBI ptt file) 0.45 SO0010 recF DNA replication and repair protein RecF (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.58 Shew_2654 queF 7-cyano-7-deazaguanine reductase (RefSeq) 0.46 Shew_0003 DNA replication and repair protein RecF (RefSeq) low > 60
Shewanella amazonensis SB2B 0.56 Sama_1120 queF 7-cyano-7-deazaguanine reductase (RefSeq) 0.44 Sama_0015 recF recombination protein F (RefSeq) low > 62
Alteromonas macleodii MIT1002 0.55 MIT1002_00988 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.35 MIT1002_00003 DNA replication and repair protein RecF low > 70
Kangiella aquimarina DSM 16071 0.52 B158DRAFT_2159 7-cyano-7-deazaguanine reductase 0.32 B158DRAFT_0366 DNA replication and repair protein RecF low > 40
Pseudomonas fluorescens FW300-N2E3 0.52 AO353_00345 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.37 AO353_10480 recombinase RecF low > 101
Pseudomonas syringae pv. syringae B728a ΔmexB 0.51 Psyr_1907 GTP cyclohydrolase I 0.38 Psyr_0003 DNA replication and repair protein RecF — —
Pseudomonas syringae pv. syringae B728a 0.51 Psyr_1907 GTP cyclohydrolase I 0.38 Psyr_0003 DNA replication and repair protein RecF low > 86
Pseudomonas fluorescens FW300-N1B4 0.51 Pf1N1B4_65 NADPH dependent preQ0 reductase (EC 1.7.1.13) 0.38 Pf1N1B4_1927 DNA recombination and repair protein RecF low > 87
Dickeya dadantii 3937 0.51 DDA3937_RS04655 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.55 DDA3937_RS21285 DNA replication/repair protein RecF low > 74
Pseudomonas sp. DMC3 0.51 GFF1298 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.38 GFF578 DNA replication and repair protein RecF low > 89
Pseudomonas segetis P6 0.51 ACVTMO_RS09455 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.38 ACVTMO_RS01255 recF DNA replication/repair protein RecF low > 75
Dickeya dianthicola 67-19 0.51 HGI48_RS04615 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.55 HGI48_RS00015 DNA replication/repair protein RecF low > 71
Pseudomonas simiae WCS417 0.51 PS417_07695 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.37 PS417_00015 recombinase RecF low > 88
Pseudomonas lactucae CFBP13502 0.51 GEMAOFIL_01671 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.38 GEMAOFIL_00183 DNA replication and repair protein RecF low > 96
Pseudomonas fluorescens SBW25-INTG 0.51 PFLU_RS07770 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.37 PFLU_RS00015 DNA replication/repair protein RecF low > 109
Serratia liquefaciens MT49 0.51 IAI46_21580 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.56 IAI46_00015 DNA replication/repair protein RecF low > 87
Pseudomonas fluorescens SBW25 0.51 PFLU_RS07770 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.37 PFLU_RS00015 DNA replication/repair protein RecF low > 109
Pseudomonas stutzeri RCH2 0.51 Psest_2714 7-cyano-7-deazaguanine reductase 0.38 Psest_0004 recF protein low > 67
Pseudomonas fluorescens GW456-L13 0.51 PfGW456L13_4015 NADPH dependent preQ0 reductase (EC 1.7.1.13) 0.37 PfGW456L13_664 DNA recombination and repair protein RecF low > 87
Pseudomonas orientalis W4I3 0.51 QF045_RS10340 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.37 QF045_RS02960 DNA replication/repair protein RecF low > 93
Dickeya dianthicola ME23 0.50 DZA65_RS04535 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.55 DZA65_RS00015 DNA replication/repair protein RecF low > 75
Pseudomonas protegens RBAN4 0.50 FABNJH_10300 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.37 FABNJH_00015 recF DNA replication/repair protein RecF — —
Pseudomonas sp. S08-1 0.50 OH686_22700 queuine synthase 0.38 OH686_12620 DNA recombination and repair protein RecF low > 80
Pseudomonas fluorescens FW300-N2C3 0.50 AO356_02205 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.37 AO356_11635 recombinase RecF low > 104
Dyella japonica UNC79MFTsu3.2 0.50 ABZR86_RS16195 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.25 ABZR86_RS15145 DNA replication/repair protein RecF low > 74
Pseudomonas sp. RS175 0.49 PFR28_01136 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.38 PFR28_04593 DNA replication and repair protein RecF low > 88
Pseudomonas aeruginosa PUPa3 0.49 NPBIFN_02219 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.38 NPBIFN_00003 recF DNA replication/repair protein RecF low > 101
Pseudomonas aeruginosa MRSN321 0.49 PFGADD_02179 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.38 PFGADD_00003 recF DNA replication/repair protein RecF 0.24 54
Pseudomonas aeruginosa PA14 0.49 IKLFDK_14200 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.38 IKLFDK_25545 DNA replication/repair protein RecF low > 98
Pseudomonas sp. SVBP6 0.49 COO64_RS09520 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.37 COO64_RS02120 recF DNA replication/repair protein RecF low > 91
Pseudomonas sp. BP01 0.49 JOY50_RS25160 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.38 JOY50_RS08340 recF DNA replication/repair protein RecF low > 84
Pseudomonas fluorescens FW300-N2E2 0.49 Pf6N2E2_2264 NADPH dependent preQ0 reductase (EC 1.7.1.13) 0.36 Pf6N2E2_4197 DNA recombination and repair protein RecF low > 103
Pseudomonas putida KT2440 0.49 PP_2160 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.37 PP_0012 DNA replication and repair protein low > 96
Lysobacter sp. OAE881 0.45 ABIE51_RS00515 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.25 ABIE51_RS00765 DNA replication/repair protein RecF low > 62
Marinobacter adhaerens HP15 0.43 HP15_1463 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.29 HP15_3705 DNA replication and repair protein recF low > 73
Acinetobacter baumannii LAC-4 0.40 RR41_RS05840 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.29 RR41_RS00015 DNA replication/repair protein RecF low > 55
Acinetobacter radioresistens SK82 0.39 MPMX26_02105 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.30 MPMX26_00003 DNA replication and repair protein RecF low > 36

Not shown: 22 genomes with orthologs for CSW01_04620 only; 0 genomes with orthologs for CSW01_00065 only