Conservation of cofitness between CSW01_06280 and CSW01_00015 in Vibrio cholerae E7946 ATCC 55056

59 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_06280 succinylglutamate desuccinylase 1.0 CSW01_00015 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE 0.75 8
Shewanella loihica PV-4 0.28 Shew_1924 succinylglutamate desuccinylase (RefSeq) 0.73 Shew_3865 trmE tRNA modification GTPase TrmE (RefSeq) — —
Shewanella amazonensis SB2B 0.28 Sama_1708 succinylglutamate desuccinylase (RefSeq) 0.75 Sama_0008 trmE tRNA modification GTPase TrmE (RefSeq) — —
Shewanella oneidensis MR-1 0.27 SO2338 astE succinylglutamate desuccinylase (NCBI ptt file) 0.75 SO0003 trmE tRNA modification GTPase TrmE (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.27 Shewana3_2132 succinylglutamate desuccinylase (RefSeq) 0.75 Shewana3_0005 trmE tRNA modification GTPase TrmE (RefSeq) low > 73
Alteromonas macleodii MIT1002 0.26 MIT1002_01538 Succinylglutamate desuccinylase 0.67 MIT1002_04128 tRNA modification GTPase MnmE — —
Kangiella aquimarina DSM 16071 0.26 B158DRAFT_1551 succinylglutamate desuccinylase (EC 3.5.1.96) 0.63 B158DRAFT_0373 tRNA modification GTPase TrmE — —
Pseudomonas segetis P6 0.25 MPMX49_03201 Succinylglutamate desuccinylase 0.64 MPMX49_00248 tRNA modification GTPase MnmE — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.25 GFF3496 Succinylglutamate desuccinylase (EC 3.5.1.96) 0.76 GFF1750 GTPase and tRNA-U34 5-formylation enzyme TrmE low > 78
Pseudomonas syringae pv. syringae B728a 0.25 Psyr_3559 succinylglutamate desuccinylase 0.64 Psyr_5133 tRNA modification GTPase trmE low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.25 Psyr_3559 succinylglutamate desuccinylase 0.64 Psyr_5133 tRNA modification GTPase trmE low > 86
Paraburkholderia sabiae LMG 24235 0.25 QEN71_RS23350 succinylglutamate desuccinylase 0.49 QEN71_RS29655 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE — —
Erwinia amylovora T8 0.25 OLJFJH_14785 succinylglutamate desuccinylase 0.74 OLJFJH_05190 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE — —
Pseudomonas aeruginosa PA14 0.25 IKLFDK_04015 succinylglutamate desuccinylase 0.66 IKLFDK_25575 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE low > 98
Pseudomonas aeruginosa PUPa3 0.25 DQ20_RS44835 astE;go_function=succinylglutamate succinylglutamate desuccinylase 0.66 DQ20_RS58595 mnmE;go_function=GTPase tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE — —
Pseudomonas aeruginosa MRSN321 0.25 DY961_RS07965 astE;go_function=succinylglutamate succinylglutamate desuccinylase 0.66 DY961_RS26185 mnmE;go_function=GTPase tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.24 OHPLBJKB_01988 Succinylglutamate desuccinylase 0.76 OHPLBJKB_04346 tRNA modification GTPase MnmE — —
Escherichia coli ECRC99 0.24 KEDOAH_01185 astE succinylglutamate desuccinylase 0.76 KEDOAH_13165 tRNA modification GTPase MnmE — —
Escherichia coli BL21 0.24 ECD_01713 succinylglutamate desuccinylase 0.76 ECD_03590 tRNA U34 5-methylaminomethyl-2-thiouridine modification GTPase low > 61
Pseudomonas fluorescens FW300-N2C3 0.24 AO356_18755 succinylglutamate desuccinylase 0.64 AO356_11660 tRNA modification GTPase MnmE — —
Pseudomonas sp. RS175 0.24 PFR28_03277 Succinylglutamate desuccinylase 0.64 PFR28_04588 tRNA modification GTPase MnmE — —
Escherichia coli ECRC100 0.24 OKFHMN_26925 astE succinylglutamate desuccinylase 0.76 OKFHMN_14985 tRNA modification GTPase MnmE — —
Escherichia coli ECRC102 0.24 NIAGMN_01140 astE succinylglutamate desuccinylase 0.76 NIAGMN_12740 tRNA modification GTPase MnmE — —
Escherichia fergusonii Becca 0.24 EFB2_02249 Succinylglutamate desuccinylase 0.76 EFB2_04925 tRNA modification GTPase MnmE 0.55 2
Escherichia coli Nissle 1917 0.24 ECOLIN_RS09725 succinylglutamate desuccinylase 0.76 ECOLIN_RS21345 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE — —
Escherichia coli BW25113 0.24 b1744 astE succinylglutamate desuccinylase (NCBI) 0.76 b3706 trmE tRNA modification GTPase (NCBI) low > 76
Enterobacter asburiae PDN3 0.24 EX28DRAFT_1748 succinylglutamate desuccinylase (EC 3.5.1.96) 0.75 EX28DRAFT_3993 tRNA modification GTPase TrmE — —
Escherichia coli ECOR27 0.24 NOLOHH_17440 astE succinylglutamate desuccinylase 0.76 NOLOHH_07125 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE low > 76
Pseudomonas fluorescens FW300-N2E2 0.24 Pf6N2E2_5671 Succinylglutamate desuccinylase (EC 3.5.1.96) 0.64 Pf6N2E2_4202 GTPase and tRNA-U34 5-formylation enzyme TrmE — —
Escherichia coli ECRC101 0.24 MCAODC_18485 astE succinylglutamate desuccinylase 0.76 MCAODC_05495 tRNA modification GTPase MnmE — —
Escherichia coli ECRC98 0.24 JDDGAC_01500 astE succinylglutamate desuccinylase 0.76 JDDGAC_18605 tRNA modification GTPase MnmE — —
Pseudomonas fluorescens FW300-N2E3 0.24 AO353_02995 succinylglutamate desuccinylase 0.64 AO353_10455 tRNA modification GTPase MnmE low > 101
Pseudomonas sp. S08-1 0.24 OH686_21320 succinylglutamate desuccinylase 0.63 OH686_12655 tRNA modification GTPase TrmE — —
Escherichia coli ECOR38 0.24 HEPCGN_05290 astE succinylglutamate desuccinylase 0.76 HEPCGN_13680 tRNA modification GTPase MnmE low > 88
Pseudomonas fluorescens GW456-L13 0.24 PfGW456L13_1977 Succinylglutamate desuccinylase (EC 3.5.1.96) (from data) 0.64 PfGW456L13_670 GTPase and tRNA-U34 5-formylation enzyme TrmE — —
Pseudomonas putida KT2440 0.24 PP_4475 succinylglutamate desuccinylase 0.65 PP_0005 GTPase — —
Escherichia coli ECRC62 0.24 BNILDI_16225 astE succinylglutamate desuccinylase 0.76 BNILDI_04405 tRNA modification GTPase MnmE low > 75
Pseudomonas sp. BP01 0.24 JOY50_RS00950 astE succinylglutamate desuccinylase 0.65 JOY50_RS08375 mnmE tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE — —
Klebsiella michiganensis M5al 0.24 BWI76_RS11690 succinylglutamate desuccinylase 0.77 BWI76_RS00050 tRNA modification GTPase — —
Paraburkholderia bryophila 376MFSha3.1 0.24 H281DRAFT_06483 succinylglutamate desuccinylase 0.49 H281DRAFT_02320 tRNA modification GTPase trmE — —
Enterobacter sp. TBS_079 0.24 MPMX20_01869 Succinylglutamate desuccinylase 0.75 MPMX20_04650 tRNA modification GTPase MnmE low > 85
Pseudomonas sp. SVBP6 0.24 COO64_RS21585 astE succinylglutamate desuccinylase 0.63 COO64_RS02085 mnmE tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE — —
Burkholderia phytofirmans PsJN 0.24 BPHYT_RS07720 Succinylglutamate desuccinylase (EC 3.5.1.96) (from data) 0.50 BPHYT_RS19830 tRNA modification GTPase TrmE — —
Pantoea sp. MT58 0.24 IAI47_11075 succinylglutamate desuccinylase 0.73 IAI47_18830 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE low > 76
Pseudomonas fluorescens FW300-N1B4 0.24 Pf1N1B4_3447 Succinylglutamate desuccinylase (EC 3.5.1.96) 0.64 Pf1N1B4_1933 GTPase and tRNA-U34 5-formylation enzyme TrmE — —
Klebsiella pneumoniae MKP103 0.24 KDGMDA_19370 succinylglutamate desuccinylase 0.75 KDGMDA_08700 tRNA modification GTPase MnmE low > 95
Pantoea agglomerans CFBP13505 P0401 0.24 PagCFBP13505_RS17520 succinylglutamate desuccinylase 0.74 PagCFBP13505_RS19345 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE — —
Pseudomonas lactucae CFBP13502 0.23 GEMAOFIL_04479 Succinylglutamate desuccinylase 0.64 GEMAOFIL_00178 tRNA modification GTPase MnmE — —
Paraburkholderia graminis OAS925 0.23 ABIE53_001774 succinylglutamate desuccinylase 0.50 ABIE53_000332 tRNA modification GTPase — —
Pseudomonas sp. DMC3 0.23 GFF4873 Succinylglutamate desuccinylase 0.64 GFF573 tRNA modification GTPase MnmE — —
Pseudomonas simiae WCS417 0.23 PS417_21680 succinylglutamate desuccinylase 0.64 PS417_28540 tRNA modification GTPase MnmE — —
Pseudomonas fluorescens SBW25 0.23 PFLU_RS23285 succinylglutamate desuccinylase 0.64 PFLU_RS30195 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE low > 109
Pseudomonas fluorescens SBW25-INTG 0.23 PFLU_RS23285 succinylglutamate desuccinylase 0.64 PFLU_RS30195 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE — —
Rahnella sp. WP5 0.23 EX31_RS17390 succinylglutamate desuccinylase 0.75 EX31_RS06000 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE low > 89
Pseudomonas orientalis W4I3 0.23 QF045_RS23785 succinylglutamate desuccinylase 0.64 QF045_RS02925 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE low > 93
Acinetobacter radioresistens SK82 0.22 MPMX26_02247 Succinylglutamate desuccinylase 0.48 MPMX26_03070 tRNA modification GTPase MnmE low > 36
Serratia liquefaciens MT49 0.22 IAI46_15315 succinylglutamate desuccinylase 0.75 IAI46_25250 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE low > 87
Marinobacter adhaerens HP15 0.21 HP15_3034 succinylglutamate desuccinylase 0.68 HP15_3698 tRNA modification GTPase TrmE — —
Acinetobacter baumannii LAC-4 0.20 RR41_RS01880 succinylglutamate desuccinylase 0.50 RR41_RS19010 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE — —
Pseudomonas stutzeri RCH2 0.18 Psest_2717 Succinylglutamate desuccinylase 0.64 Psest_4373 tRNA modification GTPase TrmE — —

Not shown: 0 genomes with orthologs for CSW01_06280 only; 60 genomes with orthologs for CSW01_00015 only