Conservation of cofitness between BPHYT_RS30235 and BPHYT_RS12635 in Burkholderia phytofirmans PsJN

47 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Burkholderia phytofirmans PsJN 1.0 BPHYT_RS30235 tartrate dehydrogenase 1.0 BPHYT_RS12635 translation factor Sua5 0.22 16
Paraburkholderia graminis OAS925 0.98 ABIE53_005023 tartrate dehydrogenase/decarboxylase/D-malate dehydrogenase 0.95 ABIE53_002753 tRNA threonylcarbamoyl adenosine modification protein (Sua5/YciO/YrdC/YwlC family) low > 113
Paraburkholderia bryophila 376MFSha3.1 0.97 H281DRAFT_06345 tartrate dehydrogenase/decarboxylase / D-malate dehydrogenase 0.96 H281DRAFT_00505 tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family low > 103
Paraburkholderia sabiae LMG 24235 0.88 QEN71_RS32005 tartrate dehydrogenase 0.93 QEN71_RS05920 L-threonylcarbamoyladenylate synthase low > 153
Ralstonia solanacearum PSI07 0.80 RPSI07_RS07555 tartrate dehydrogenase 0.71 RPSI07_RS18490 threonylcarbamoyl-AMP synthase — —
Ralstonia solanacearum GMI1000 0.79 RS_RS24845 tartrate dehydrogenase 0.69 RS_RS05680 threonylcarbamoyl-AMP synthase low > 80
Ralstonia solanacearum IBSBF1503 0.78 RALBFv3_RS16145 tartrate dehydrogenase 0.70 RALBFv3_RS14870 threonylcarbamoyl-AMP synthase low > 76
Ralstonia solanacearum UW163 0.78 UW163_RS16880 tartrate dehydrogenase 0.70 UW163_RS12340 threonylcarbamoyl-AMP synthase — —
Ralstonia sp. UNC404CL21Col 0.77 ABZR87_RS21505 tartrate dehydrogenase 0.70 ABZR87_RS10525 L-threonylcarbamoyladenylate synthase low > 80
Serratia liquefaciens MT49 0.76 IAI46_21025 tartrate dehydrogenase 0.55 IAI46_14010 threonylcarbamoyl-AMP synthase low > 86
Acidovorax sp. GW101-3H11 0.75 Ac3H11_3259 Tartrate dehydrogenase (EC 1.1.1.93) @ Tartrate decarboxylase (EC 4.1.1.73) @ D-malic enzyme (EC 1.1.1.83) 0.67 Ac3H11_1753 TsaC protein (YrdC domain) required for threonylcarbamoyladenosine t(6)A37 modification in tRNA low > 79
Pseudomonas fluorescens FW300-N2E3 0.75 AO353_28225 tartrate dehydrogenase 0.59 AO353_18525 hypothetical protein low > 101
Pseudomonas fluorescens FW300-N1B4 0.75 Pf1N1B4_4932 Tartrate dehydrogenase (EC 1.1.1.93) / Tartrate decarboxylase (EC 4.1.1.73) / D-malic enzyme (EC 1.1.1.83) 0.59 Pf1N1B4_3552 Hypothetical YciO protein, TsaC/YrdC paralog low > 87
Herbaspirillum seropedicae SmR1 0.75 HSERO_RS07390 tartrate dehydrogenase 0.70 HSERO_RS16410 translation factor Sua5 low > 78
Variovorax sp. OAS795 0.75 ABID97_RS25885 tartrate dehydrogenase 0.67 ABID97_RS22605 L-threonylcarbamoyladenylate synthase low > 91
Pseudomonas fluorescens FW300-N2C3 0.75 AO356_26735 tartrate dehydrogenase 0.58 AO356_18500 hypothetical protein low > 104
Pseudomonas fluorescens FW300-N2E2 0.74 Pf6N2E2_369 Tartrate dehydrogenase (EC 1.1.1.93) @ Tartrate decarboxylase (EC 4.1.1.73) @ D-malic enzyme (EC 1.1.1.83) 0.58 Pf6N2E2_5626 Hypothetical YciO protein, TsaC/YrdC paralog low > 103
Klebsiella michiganensis M5al 0.74 BWI76_RS10680 tartrate dehydrogenase 0.54 BWI76_RS11870 hypothetical protein low > 92
Pseudomonas syringae pv. syringae B728a 0.73 Psyr_2396 Tartrate dehydrogenase 0.55 Psyr_3585 Sua5/YciO/YrdC/YwlC low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.73 Psyr_2396 Tartrate dehydrogenase 0.55 Psyr_3585 Sua5/YciO/YrdC/YwlC low > 86
Escherichia coli ECOR38 0.73 HEPCGN_05015 dmlA multifunctional D-malate/3-isopropylmalate/tartarate dehydrogenase 0.55 HEPCGN_25550 yciO L-threonylcarbamoyladenylate synthase low > 87
Escherichia coli ECOR27 0.73 NOLOHH_17145 dmlA multifunctional D-malate/3-isopropylmalate/tartarate dehydrogenase 0.55 NOLOHH_20300 yciO L-threonylcarbamoyladenylate synthase low > 75
Escherichia coli ECRC99 0.72 KEDOAH_01485 dmlA multifunctional D-malate/3-isopropylmalate/tartarate dehydrogenase 0.55 KEDOAH_26110 yciO L-threonylcarbamoyladenylate synthase — —
Escherichia coli BW25113 0.72 b1800 yeaU predicted dehydrogenase (NCBI) 0.55 b1267 yciO orf, hypothetical protein (VIMSS) — —
Escherichia coli ECRC62 0.72 BNILDI_15930 dmlA multifunctional D-malate/3-isopropylmalate/tartarate dehydrogenase 0.55 BNILDI_18450 yciO L-threonylcarbamoyladenylate synthase low > 75
Escherichia coli ECRC100 0.72 OKFHMN_26625 dmlA multifunctional D-malate/3-isopropylmalate/tartarate dehydrogenase 0.55 OKFHMN_02640 yciO L-threonylcarbamoyladenylate synthase low > 80
Pseudomonas fluorescens SBW25 0.72 PFLU_RS19735 tartrate dehydrogenase 0.59 PFLU_RS23910 threonylcarbamoyl-AMP synthase low > 109
Escherichia coli ECRC98 0.72 JDDGAC_01200 dmlA multifunctional D-malate/3-isopropylmalate/tartarate dehydrogenase 0.55 JDDGAC_05185 yciO L-threonylcarbamoyladenylate synthase low > 86
Escherichia coli ECRC102 0.72 NIAGMN_01440 dmlA multifunctional D-malate/3-isopropylmalate/tartarate dehydrogenase 0.55 NIAGMN_26810 yciO L-threonylcarbamoyladenylate synthase — —
Pseudomonas fluorescens SBW25-INTG 0.72 PFLU_RS19735 tartrate dehydrogenase 0.59 PFLU_RS23910 threonylcarbamoyl-AMP synthase low > 109
Escherichia coli HS(pFamp)R (ATCC 700891) 0.72 OHPLBJKB_01933 D-malate dehydrogenase [decarboxylating] 0.55 OHPLBJKB_02417 putative protein YciO low > 73
Escherichia coli ECRC101 0.72 MCAODC_18785 dmlA multifunctional D-malate/3-isopropylmalate/tartarate dehydrogenase 0.55 MCAODC_15625 yciO L-threonylcarbamoyladenylate synthase low > 87
Escherichia coli BL21 0.72 ECD_01770 D-malate oxidase, NAD-dependent; putative tartrate dehydrogenase 0.55 ECD_01241 putative RNA binding protein low > 61
Castellaniella sp019104865 MT123 0.72 ABCV34_RS14695 tartrate dehydrogenase 0.59 ABCV34_RS15815 L-threonylcarbamoyladenylate synthase low > 48
Variovorax sp. SCN45 0.66 GFF6198 D-malate dehydrogenase [decarboxylating] (EC 1.1.1.83) 0.68 GFF5789 YciO protein, TsaC/YrdC paralog low > 127
Cupriavidus basilensis FW507-4G11 0.66 RR42_RS02600 tartrate dehydrogenase 0.68 RR42_RS06230 hypothetical protein low > 128
Hydrogenophaga sp. GW460-11-11-14-LB1 0.66 GFF3852 Tartrate dehydrogenase (EC 1.1.1.93) / Tartrate decarboxylase (EC 4.1.1.73) / D-malic enzyme (EC 1.1.1.83) 0.66 GFF110 Hypothetical YciO protein, TsaC/YrdC paralog low > 90
Dickeya dadantii 3937 0.66 DDA3937_RS04645 tartrate dehydrogenase 0.55 DDA3937_RS10495 threonylcarbamoyl-AMP synthase low > 74
Dickeya dianthicola ME23 0.66 DZA65_RS04525 tartrate dehydrogenase 0.55 DZA65_RS10975 threonylcarbamoyl-AMP synthase low > 75
Pantoea sp. MT58 0.65 IAI47_17525 tartrate dehydrogenase 0.53 IAI47_09200 threonylcarbamoyl-AMP synthase low > 76
Dickeya dianthicola 67-19 0.65 HGI48_RS04605 tartrate dehydrogenase 0.55 HGI48_RS10495 threonylcarbamoyl-AMP synthase low > 71
Marinobacter adhaerens HP15 0.38 HP15_817 3-isopropylmalate dehydrogenase 0.61 HP15_1188 Sua5/YciO/YrdC/YwlC family protein low > 73
Shewanella loihica PV-4 0.30 Shew_2760 isocitrate dehydrogenase (RefSeq) 0.50 Shew_2249 Sua5/YciO/YrdC/YwlC family protein (RefSeq) — —
Shewanella sp. ANA-3 0.30 Shewana3_2890 isocitrate dehydrogenase (RefSeq) 0.47 Shewana3_1522 translation factor SUA5 (RefSeq) — —
Alteromonas macleodii MIT1002 0.30 MIT1002_00983 Isocitrate dehydrogenase [NADP] 0.56 MIT1002_01432 t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN low > 70
Shewanella amazonensis SB2B 0.29 Sama_2423 isocitrate dehydrogenase (RefSeq) 0.52 Sama_2127 Sua5/YciO/YrdC/YwlC family protein (RefSeq) — —
Shewanella oneidensis MR-1 0.29 SO1538 isocitrate dehydrogenase, NAD-dependent (NCBI ptt file) 0.48 SO3016 Sua5/YciO/YrdC/YwlC family protein (NCBI ptt file) — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.26 CA264_17775 isocitrate dehydrogenase 0.34 CA264_02115 threonylcarbamoyl-AMP synthase — —

Not shown: 13 genomes with orthologs for BPHYT_RS30235 only; 28 genomes with orthologs for BPHYT_RS12635 only