Conservation of cofitness between BPHYT_RS08730 and BPHYT_RS01475 in Burkholderia phytofirmans PsJN

52 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Burkholderia phytofirmans PsJN 1.0 BPHYT_RS08730 hypothetical protein 1.0 BPHYT_RS01475 16S rRNA methyltransferase 0.25 7
Paraburkholderia graminis OAS925 0.97 ABIE53_001981 uncharacterized protein (DUF3820 family) 0.87 ABIE53_000392 16S rRNA (cytosine967-C5)-methyltransferase low > 113
Paraburkholderia bryophila 376MFSha3.1 0.97 H281DRAFT_00769 hypothetical protein 0.89 H281DRAFT_02237 16S rRNA (cytosine967-C5)-methyltransferase low > 103
Paraburkholderia sabiae LMG 24235 0.91 QEN71_RS22640 DUF3820 family protein 0.81 QEN71_RS00175 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 153
Cupriavidus basilensis FW507-4G11 0.85 RR42_RS27745 hypothetical protein 0.45 RR42_RS20450 16S rRNA methyltransferase low > 128
Pseudomonas stutzeri RCH2 0.83 Psest_1458 Uncharacterized protein conserved in bacteria 0.27 Psest_0021 ribosomal RNA small subunit methyltransferase RsmB low > 67
Ralstonia solanacearum PSI07 0.82 RPSI07_RS08385 hypothetical protein 0.47 RPSI07_RS23575 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 81
Ralstonia solanacearum IBSBF1503 0.81 RALBFv3_RS08885 hypothetical protein 0.44 RALBFv3_RS09790 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 76
Ralstonia solanacearum UW163 0.81 UW163_RS04725 hypothetical protein 0.44 UW163_RS03790 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB — —
Ralstonia solanacearum GMI1000 0.81 RS_RS16700 hypothetical protein 0.44 RS_RS00375 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 80
Pseudomonas sp. S08-1 0.81 OH686_18670 Uncharacterized protein YpeB 0.27 OH686_12525 16S rRNA (cytosine(967)-C(5))-methyltransferase low > 80
Ralstonia sp. UNC404CL21Col 0.81 ABZR87_RS04155 DUF3820 family protein 0.47 ABZR87_RS04950 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 80
Pseudomonas syringae pv. syringae B728a 0.79 Psyr_1123 conserved hypothetical protein 0.26 Psyr_0017 16S rRNA m(5)C-967 methyltransferase low > 86
Pseudomonas fluorescens FW300-N1B4 0.79 Pf1N1B4_583 FIG00957748: hypothetical protein 0.25 Pf1N1B4_1914 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) low > 87
Pseudomonas syringae pv. syringae B728a ΔmexB 0.79 Psyr_1123 conserved hypothetical protein 0.26 Psyr_0017 16S rRNA m(5)C-967 methyltransferase low > 86
Pseudomonas fluorescens FW300-N2E3 0.78 AO353_03335 hypothetical protein 0.25 AO353_10630 16S rRNA methyltransferase low > 101
Pseudomonas fluorescens GW456-L13 0.78 PfGW456L13_1906 FIG00957748: hypothetical protein 0.25 PfGW456L13_652 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) low > 87
Dechlorosoma suillum PS 0.78 Dsui_0949 hypothetical protein 0.33 Dsui_0812 ribosomal RNA small subunit methyltransferase RsmB low > 51
Pseudomonas fluorescens FW300-N2C3 0.78 AO356_05140 hypothetical protein 0.25 AO356_11275 16S rRNA methyltransferase low > 104
Hydrogenophaga sp. GW460-11-11-14-LB1 0.78 GFF4965 Putative cytoplasmic protein 0.35 GFF1789 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) low > 90
Pseudomonas fluorescens SBW25-INTG 0.76 PFLU_RS23705 DUF3820 family protein 0.25 PFLU_RS00080 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 109
Pseudomonas fluorescens SBW25 0.76 PFLU_RS23705 DUF3820 family protein 0.25 PFLU_RS00080 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 109
Pseudomonas simiae WCS417 0.76 PS417_22090 hypothetical protein 0.25 PS417_00085 16S rRNA methyltransferase — —
Variovorax sp. SCN45 0.76 GFF5018 Uncharacterized protein YpeB 0.34 GFF5878 16S rRNA (cytosine(967)-C(5))-methyltransferase (EC 2.1.1.176) low > 127
Variovorax sp. OAS795 0.72 ABID97_RS04120 DUF3820 family protein 0.32 ABID97_RS05360 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 91
Acidovorax sp. GW101-3H11 0.71 Ac3H11_1029 Putative cytoplasmic protein 0.32 Ac3H11_4461 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) low > 79
Shewanella oneidensis MR-1 0.49 SO3326 conserved hypothetical protein (NCBI ptt file) 0.24 SO0030 sun sun protein (NCBI ptt file) low > 76
Alteromonas macleodii MIT1002 0.49 MIT1002_01393 hypothetical protein 0.25 MIT1002_00018 Ribosomal RNA small subunit methyltransferase B low > 70
Vibrio cholerae E7946 ATCC 55056 0.48 CSW01_14815 hypothetical protein 0.28 CSW01_00225 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 62
Rahnella sp. WP5 0.47 EX31_RS20155 DUF3820 family protein 0.29 EX31_RS15985 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 89
Dickeya dianthicola 67-19 0.45 HGI48_RS17140 DUF3820 family protein 0.29 HGI48_RS19225 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 71
Serratia liquefaciens MT49 0.45 IAI46_18425 DUF3820 family protein 0.28 IAI46_23275 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 86
Klebsiella michiganensis M5al 0.44 BWI76_RS20620 negative regulator 0.27 BWI76_RS25680 16S rRNA m5C967 methyltransferase — —
Shewanella loihica PV-4 0.44 Shew_1282 hypothetical protein (RefSeq) 0.25 Shew_3738 sun protein (RefSeq) low > 60
Enterobacter sp. TBS_079 0.44 MPMX20_03304 hypothetical protein 0.29 MPMX20_04196 Ribosomal RNA small subunit methyltransferase B low > 85
Escherichia coli Nissle 1917 0.44 ECOLIN_RS13850 DUF3820 family protein 0.28 ECOLIN_RS18875 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB — —
Escherichia coli ECOR38 0.44 HEPCGN_21400 Putative quorum-sensing-regulated virulence factor 0.28 HEPCGN_16350 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 87
Escherichia coli BW25113 0.44 b4546 ypeB hypothetical protein (NCBI) 0.29 b3289 rsmB 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent (NCBI) low > 76
Escherichia coli ECRC100 0.44 OKFHMN_22220 ypeB Uncharacterized protein YpeB 0.28 OKFHMN_17520 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 80
Escherichia coli HS(pFamp)R (ATCC 700891) 0.44 OHPLBJKB_01313 hypothetical protein 0.29 OHPLBJKB_00415 Ribosomal RNA small subunit methyltransferase B low > 73
Escherichia coli ECRC101 0.44 MCAODC_12750 ypeB Uncharacterized protein YpeB 0.28 MCAODC_08050 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 87
Escherichia coli BL21 0.44 ECD_02310 DUF3820 family protein 0.29 ECD_03139 16S rRNA m(5)C967 methyltransferase, SAM-dependent low > 61
Escherichia coli ECRC62 0.44 BNILDI_12765 ypeB Uncharacterized protein YpeB 0.29 BNILDI_02200 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 75
Escherichia coli ECRC102 0.44 NIAGMN_19990 ypeB Uncharacterized protein YpeB 0.28 NIAGMN_15290 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB — —
Escherichia coli ECOR27 0.44 NOLOHH_13900 ypeB Uncharacterized protein YpeB 0.29 NOLOHH_09320 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 75
Escherichia coli ECRC98 0.44 JDDGAC_26170 ypeB Uncharacterized protein YpeB 0.28 JDDGAC_21150 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 86
Escherichia coli ECRC99 0.44 KEDOAH_06000 ypeB Uncharacterized protein YpeB 0.28 KEDOAH_10620 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB — —
Escherichia fergusonii Becca 0.43 EFB2_01466 hypothetical protein 0.28 EFB2_00535 Ribosomal RNA small subunit methyltransferase B low > 86
Dickeya dianthicola ME23 0.43 DZA65_RS18225 hypothetical protein 0.29 DZA65_RS20350 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.42 GFF2040 FIG074102: hypothetical protein 0.28 GFF2390 16S rRNA (cytosine(967)-C(5))-methyltransferase (EC 2.1.1.176) ## SSU rRNA m5C967 low > 78
Pantoea sp. MT58 0.42 IAI47_05460 DUF3820 family protein 0.28 IAI47_02280 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 76
Enterobacter asburiae PDN3 0.42 EX28DRAFT_0218 Uncharacterized protein conserved in bacteria 0.27 EX28DRAFT_0039 16S rRNA (cytosine(967)-C(5))-methyltransferase low > 76
Pectobacterium carotovorum WPP14 0.40 HER17_RS04050 DUF3820 family protein 0.28 HER17_RS02215 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 75

Not shown: 8 genomes with orthologs for BPHYT_RS08730 only; 16 genomes with orthologs for BPHYT_RS01475 only