Conservation of cofitness between AO353_22890 and AO353_05185 in Pseudomonas fluorescens FW300-N2E3

55 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas fluorescens FW300-N2E3 1.0 AO353_22890 secretion protein HlyD 1.0 AO353_05185 hypothetical protein 0.31 20
Pseudomonas fluorescens GW456-L13 0.83 PfGW456L13_3267 RND transporter, membrane fusion protein 0.95 PfGW456L13_5015 Ribosome hibernation protein YhbH low > 87
Pseudomonas fluorescens FW300-N1B4 0.82 Pf1N1B4_4664 RND transporter, membrane fusion protein 0.95 Pf1N1B4_1081 Ribosome hibernation protein YhbH — —
Pseudomonas fluorescens FW300-N2E2 0.81 Pf6N2E2_1273 Probable RND efflux membrane fusion protein 0.95 Pf6N2E2_3268 Ribosome hibernation protein YhbH 0.27 46
Pseudomonas fluorescens FW300-N2C3 0.81 AO356_25870 secretion protein HlyD 0.95 AO356_07040 hypothetical protein low > 104
Pseudomonas sp. RS175 0.80 PFR28_02195 Multidrug resistance protein MdtA 0.86 PFR28_00172 Ribosome hibernation promoting factor low > 88
Pseudomonas simiae WCS417 0.79 PS417_12740 secretion protein HlyD 0.75 PS417_04340 ribosome hibernation promoting factor HPF 0.25 6
Pseudomonas fluorescens SBW25 0.78 PFLU_RS13425 MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit 0.70 PFLU_RS04395 ribosome-associated translation inhibitor RaiA low > 109
Pseudomonas fluorescens SBW25-INTG 0.78 PFLU_RS13425 MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit 0.70 PFLU_RS04395 ribosome-associated translation inhibitor RaiA low > 109
Pseudomonas syringae pv. syringae B728a ΔmexB 0.65 Psyr_2482 Secretion protein HlyD 0.79 Psyr_4148 sigma 54 modulation protein / SSU ribosomal protein S30P low > 86
Pseudomonas syringae pv. syringae B728a 0.65 Psyr_2482 Secretion protein HlyD 0.79 Psyr_4148 sigma 54 modulation protein / SSU ribosomal protein S30P low > 86
Pseudomonas putida KT2440 0.61 PP_3585 multidrug efflux transport system - putative membrane fusion protein 0.79 PP_0951 Ribosome hibernation promoting factor low > 96
Pseudomonas stutzeri RCH2 0.55 Psest_2138 RND family efflux transporter, MFP subunit 0.64 Psest_3314 ribosomal subunit interface protein low > 67
Pseudomonas sp. S08-1 0.51 OH686_00920 Multidrug efflux system MdtABC-TolC, membrane fusion component MdtA 0.79 OH686_08550 Ribosome hibernation promoting factor Hpf low > 80
Ralstonia solanacearum PSI07 0.43 RPSI07_RS05510 multidrug transporter subunit MdtA 0.43 RPSI07_RS22135 ribosomal subunit interface protein low > 81
Ralstonia solanacearum UW163 0.43 UW163_RS21005 multidrug transporter subunit MdtA 0.42 UW163_RS02415 ribosomal subunit interface protein — —
Ralstonia solanacearum IBSBF1503 0.43 RALBFv3_RS18125 multidrug transporter subunit MdtA 0.42 RALBFv3_RS11165 ribosomal subunit interface protein low > 76
Ralstonia sp. UNC404CL21Col 0.42 ABZR87_RS19030 MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit 0.40 ABZR87_RS07055 ribosome-associated translation inhibitor RaiA low > 80
Ralstonia solanacearum GMI1000 0.42 RS_RS22910 multidrug transporter subunit MdtA 0.42 RS_RS02015 ribosomal subunit interface protein low > 80
Paraburkholderia sabiae LMG 24235 0.40 QEN71_RS23300 MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit 0.40 QEN71_RS01750 ribosome-associated translation inhibitor RaiA low > 153
Enterobacter asburiae PDN3 0.40 EX28DRAFT_0484 RND family efflux transporter, MFP subunit 0.48 EX28DRAFT_3257 ribosomal subunit interface protein low > 76
Pantoea sp. MT58 0.40 IAI47_06875 MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit 0.47 IAI47_17190 ribosome hibernation promoting factor low > 76
Escherichia coli BW25113 0.40 b2074 b2074 putative membrane protein (VIMSS) 0.49 b3203 yhbH predicted ribosome-associated, sigma 54 modulation protein (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.40 OHPLBJKB_01630 Multidrug resistance protein MdtA 0.49 OHPLBJKB_00497 Ribosome hibernation promoting factor low > 73
Escherichia coli ECRC62 0.40 BNILDI_14460 mdtA multidrug efflux RND transporter subunit MdtA 0.49 BNILDI_01800 Ribosome hibernation promoting factor low > 75
Escherichia coli ECRC100 0.40 OKFHMN_24200 mdtA multidrug efflux RND transporter subunit MdtA 0.49 OKFHMN_17935 Ribosome hibernation promoting factor low > 80
Paraburkholderia bryophila 376MFSha3.1 0.40 H281DRAFT_06493 membrane fusion protein, multidrug efflux system 0.41 H281DRAFT_01928 sigma 54 modulation protein /SSU ribosomal protein S30P low > 103
Escherichia coli ECRC101 0.40 MCAODC_20740 mdtA multidrug efflux RND transporter subunit MdtA 0.49 MCAODC_08455 Ribosome hibernation promoting factor low > 87
Escherichia coli ECRC98 0.40 JDDGAC_28310 mdtA multidrug efflux RND transporter subunit MdtA 0.49 JDDGAC_21560 Ribosome hibernation promoting factor low > 86
Escherichia coli ECRC102 0.40 NIAGMN_22145 mdtA multidrug efflux RND transporter subunit MdtA 0.49 NIAGMN_15695 Ribosome hibernation promoting factor — —
Escherichia coli BL21 0.40 ECD_01979 multidrug efflux system, subunit A 0.49 ECD_03068 ribosome hibernation promoting factor HPF; stabilizes 100S dimers low > 61
Escherichia coli ECRC99 0.40 KEDOAH_03950 mdtA multidrug efflux RND transporter subunit MdtA 0.49 KEDOAH_10215 Ribosome hibernation promoting factor — —
Escherichia coli ECOR27 0.39 NOLOHH_15545 mdtA multidrug efflux RND transporter subunit MdtA 0.49 NOLOHH_09735 Ribosome hibernation promoting factor low > 75
Escherichia coli ECOR38 0.39 HEPCGN_02890 mdtA multidrug efflux RND transporter subunit MdtA 0.49 HEPCGN_16810 Ribosome hibernation promoting factor low > 87
Escherichia coli Nissle 1917 0.39 ECOLIN_RS12195 multidrug efflux RND transporter subunit MdtA 0.49 ECOLIN_RS18430 ribosome hibernation promoting factor low > 55
Enterobacter sp. TBS_079 0.39 MPMX20_03060 Multidrug resistance protein MdtA 0.49 MPMX20_04109 Ribosome hibernation promoting factor low > 85
Escherichia fergusonii Becca 0.39 EFB2_01781 Multidrug resistance protein MdtA 0.49 EFB2_00620 Ribosome hibernation promoting factor low > 86
Klebsiella michiganensis M5al 0.39 BWI76_RS19250 multidrug transporter subunit MdtA 0.48 BWI76_RS25270 ribosome hibernation promoting factor low > 92
Burkholderia phytofirmans PsJN 0.39 BPHYT_RS07790 RND transporter MFP subunit 0.41 BPHYT_RS02900 ribosome hibernation promoting factor low > 109
Cupriavidus basilensis FW507-4G11 0.39 RR42_RS03315 RND transporter MFP subunit 0.46 RR42_RS02080 ribosome hibernation promoting factor low > 128
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.38 GFF3855 Multidrug transporter MdtA 0.48 GFF2947 Ribosome hibernation protein YhbH low > 78
Dickeya dadantii 3937 0.38 DDA3937_RS15260 MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit 0.49 DDA3937_RS01525 ribosome hibernation promoting factor low > 74
Dickeya dianthicola 67-19 0.38 HGI48_RS15340 MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit 0.48 HGI48_RS01440 ribosome hibernation promoting factor low > 71
Pectobacterium carotovorum WPP14 0.37 HER17_RS06325 MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit 0.51 HER17_RS20065 ribosome hibernation promoting factor 0.63 74
Erwinia tracheiphila SCR3 0.37 LU632_RS08695 MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit 0.49 LU632_RS21285 hpf ribosome hibernation promoting factor low > 74
Rahnella sp. WP5 0.36 EX31_RS13385 MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit 0.54 EX31_RS12395 ribosome hibernation promoting factor low > 89
Dickeya dianthicola ME23 0.36 DZA65_RS16160 MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit 0.48 DZA65_RS01505 ribosome hibernation promoting factor low > 75
Serratia liquefaciens MT49 0.36 IAI46_18970 MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit 0.52 IAI46_22475 ribosome hibernation promoting factor low > 86
Castellaniella sp019104865 MT123 0.35 ABCV34_RS14615 efflux RND transporter periplasmic adaptor subunit 0.38 ABCV34_RS14345 ribosome-associated translation inhibitor RaiA low > 48
Variovorax sp. SCN45 0.34 GFF6660 Multidrug efflux system MdtABC-TolC, membrane fusion component MdtA 0.48 GFF7293 Ribosome hibernation promoting factor Hpf low > 127
Variovorax sp. OAS795 0.33 ABID97_RS20860 efflux RND transporter periplasmic adaptor subunit 0.48 ABID97_RS04490 ribosome-associated translation inhibitor RaiA low > 91
Xanthomonas campestris pv. campestris strain 8004 0.29 Xcc-8004.4791.1 Probable Co/Zn/Cd efflux system membrane fusion protein 0.41 Xcc-8004.1661.1 Ribosome hibernation protein YhbH low > 74
Dyella japonica UNC79MFTsu3.2 0.28 ABZR86_RS16315 efflux RND transporter periplasmic adaptor subunit 0.36 ABZR86_RS19810 ribosome-associated translation inhibitor RaiA low > 74
Rhodanobacter sp. FW510-T8 0.28 OKGIIK_16100 HlyD-D23 domain-containing protein 0.39 OKGIIK_02260 raiA ribosomal subunit interface protein low > 52
Rhodanobacter denitrificans MT42 0.26 LRK55_RS09500 efflux RND transporter periplasmic adaptor subunit 0.38 LRK55_RS12570 ribosome-associated translation inhibitor RaiA low > 63
Rhodanobacter denitrificans FW104-10B01 0.26 LRK54_RS09840 efflux RND transporter periplasmic adaptor subunit 0.38 LRK54_RS12870 ribosome-associated translation inhibitor RaiA low > 59

Not shown: 6 genomes with orthologs for AO353_22890 only; 16 genomes with orthologs for AO353_05185 only