Conservation of cofitness between Shewana3_2281 and Shewana3_3278 in Shewanella sp. ANA-3

49 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Shewanella sp. ANA-3 1.0 Shewana3_2281 BadM/Rrf2 family transcriptional regulator (RefSeq) 1.0 Shewana3_3278 cobT nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (RefSeq) 0.71 6
Shewanella oneidensis MR-1 0.99 SO2263 Rrf2 family protein (NCBI ptt file) 0.85 SO1035 cobT nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.94 Shew_2318 BadM/Rrf2 family transcriptional regulator (RefSeq) 0.62 Shew_0714 cobT nicotinate-nucleotide--dimethylbenzimidazolephosphoribosyltransferase (RefSeq) — —
Shewanella amazonensis SB2B 0.92 Sama_1292 Rrf2 family protein (RefSeq) 0.59 Sama_0762 cobT nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (RefSeq) low > 62
Vibrio cholerae E7946 ATCC 55056 0.70 CSW01_03880 HTH-type transcriptional regulator IscR 0.47 CSW01_06260 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase low > 62
Rahnella sp. WP5 0.68 EX31_RS20550 Fe-S cluster assembly transcriptional regulator IscR 0.28 EX31_RS09920 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase low > 89
Pseudomonas stutzeri RCH2 0.66 Psest_1250 iron-sulfur cluster assembly transcription factor IscR 0.35 Psest_3006 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase — —
Pseudomonas putida KT2440 0.66 PP_0841 DNA-binding transcriptional dual regulator 2Fe-2S cluster IscR 0.36 PP_1679 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase low > 96
Pseudomonas sp. S08-1 0.66 OH686_17470 iron-sulfur cluster assembly transcription factor IscR 0.36 OH686_04955 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase low > 80
Pseudomonas syringae pv. syringae B728a 0.66 Psyr_1236 transcriptional regulator, BadM/Rrf2 family 0.39 Psyr_3674 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.66 Psyr_1236 transcriptional regulator, BadM/Rrf2 family 0.39 Psyr_3674 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase — —
Pseudomonas fluorescens SBW25-INTG 0.65 PFLU_RS24860 Fe-S cluster assembly transcriptional regulator IscR 0.35 PFLU_RS21995 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase low > 109
Pseudomonas simiae WCS417 0.65 PS417_23205 transcriptional regulator 0.34 PS417_20030 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase low > 88
Pseudomonas fluorescens SBW25 0.65 PFLU_RS24860 Fe-S cluster assembly transcriptional regulator IscR 0.35 PFLU_RS21995 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase low > 109
Pseudomonas fluorescens FW300-N2E3 0.64 AO353_15830 transcriptional regulator 0.38 AO353_02605 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase low > 101
Pseudomonas fluorescens FW300-N2C3 0.64 AO356_06650 transcriptional regulator 0.38 AO356_19170 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase low > 104
Pseudomonas sp. RS175 0.64 PFR28_00285 HTH-type transcriptional regulator IscR 0.37 PFR28_03202 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase low > 88
Klebsiella michiganensis M5al 0.59 BWI76_RS21165 Fe-S cluster assembly transcriptional regulator IscR 0.26 BWI76_RS23000 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase low > 92
Escherichia coli ECRC102 0.59 NIAGMN_19385 iscR Fe-S cluster assembly transcriptional regulator IscR 0.28 NIAGMN_22640 cobT nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase — —
Escherichia coli ECRC62 0.59 BNILDI_12085 iscR Fe-S cluster assembly transcriptional regulator IscR 0.28 BNILDI_14875 cobT nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase low > 75
Escherichia coli ECOR38 0.59 HEPCGN_20755 iscR Fe-S cluster assembly transcriptional regulator IscR 0.28 HEPCGN_03470 cobT nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase low > 87
Escherichia coli ECRC101 0.59 MCAODC_12145 iscR Fe-S cluster assembly transcriptional regulator IscR 0.28 MCAODC_20255 cobT nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase low > 87
Escherichia coli BW25113 0.59 b2531 iscR DNA-binding transcriptional repressor (NCBI) 0.28 b1991 cobT nicotinate-nucleotide--dimethylbenzimidazolephosphoribosyltransferase (NCBI) low > 76
Escherichia coli Nissle 1917 0.59 ECOLIN_RS14370 Fe-S cluster assembly transcriptional regulator IscR 0.28 ECOLIN_RS11620 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase low > 55
Escherichia coli ECRC98 0.59 JDDGAC_25290 iscR Fe-S cluster assembly transcriptional regulator IscR 0.29 JDDGAC_29265 cobT nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase low > 86
Escherichia coli ECRC100 0.59 OKFHMN_21615 iscR Fe-S cluster assembly transcriptional regulator IscR 0.28 OKFHMN_25135 cobT nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase low > 80
Escherichia coli HS(pFamp)R (ATCC 700891) 0.59 OHPLBJKB_01178 HTH-type transcriptional regulator IscR 0.28 OHPLBJKB_01717 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase low > 73
Escherichia coli BL21 0.59 ECD_02423 isc operon transcriptional repressor; suf operon transcriptional activator; oxidative stress- and iron starvation-inducible; autorepressor 0.28 ECD_01900 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase low > 61
Escherichia coli ECOR27 0.59 NOLOHH_13285 iscR Fe-S cluster assembly transcriptional regulator IscR 0.28 NOLOHH_16045 cobT nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase low > 75
Escherichia fergusonii Becca 0.59 EFB2_01359 HTH-type transcriptional regulator IscR 0.28 EFB2_01898 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase low > 86
Escherichia coli ECRC99 0.59 KEDOAH_06605 iscR Fe-S cluster assembly transcriptional regulator IscR 0.28 KEDOAH_02975 cobT nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.59 GFF2436 Iron-sulfur cluster regulator IscR 0.27 GFF3969 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) low > 78
Pseudomonas fluorescens FW300-N1B4 0.58 Pf1N1B4_866 Iron-sulfur cluster regulator IscR 0.38 Pf1N1B4_3713 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) low > 87
Pseudomonas fluorescens GW456-L13 0.58 PfGW456L13_4874 Iron-sulfur cluster regulator IscR 0.38 PfGW456L13_4236 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) low > 87
Pseudomonas fluorescens FW300-N2E2 0.57 Pf6N2E2_3190 Iron-sulfur cluster regulator IscR 0.40 Pf6N2E2_5744 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) — —
Acinetobacter radioresistens SK82 0.55 MPMX26_01328 HTH-type transcriptional regulator IscR 0.35 MPMX26_01612 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase low > 36
Hydrogenophaga sp. GW460-11-11-14-LB1 0.52 GFF4961 Iron-sulfur cluster regulator IscR 0.37 GFF3999 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) — —
Cupriavidus basilensis FW507-4G11 0.51 RR42_RS06020 Fe-S cluster assembly transcriptional regulator IscR 0.45 RR42_RS16120 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase low > 128
Herbaspirillum seropedicae SmR1 0.51 HSERO_RS15775 DNA-binding protein 0.36 HSERO_RS09770 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase — —
Dechlorosoma suillum PS 0.50 Dsui_2369 iron-sulfur cluster assembly transcription factor IscR 0.42 Dsui_0472 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase low > 51
Rhodospirillum rubrum S1H 0.46 Rru_A2028 Transcriptional Regulator, BadM/Rrf2 family (NCBI) 0.22 Rru_A0667 Nicotinate-nucleotide-dimethylbenzimidazolephosphoribosyltransferase (NCBI) — —
Azospirillum sp. SherDot2 0.45 MPMX19_01654 HTH-type transcriptional regulator IscR 0.29 MPMX19_00312 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase — —
Magnetospirillum magneticum AMB-1 0.45 AMB_RS15265 Rrf2 family transcriptional regulator 0.25 AMB_RS02805 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase — —
Azospirillum brasilense Sp245 0.45 AZOBR_RS05830 Rrf2 family transcriptional regulator 0.30 AZOBR_RS03460 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase — —
Phaeobacter inhibens DSM 17395 0.37 PGA1_c15350 putative transcriptional regulator 0.29 PGA1_c07570 nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase CobT — —
Desulfovibrio vulgaris Hildenborough JW710 0.35 DVU0529 rrf2 Rrf2 protein (voordouw) 0.36 DVU3279 cobT nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (TIGR) low > 55
Desulfovibrio vulgaris Miyazaki F 0.33 DvMF_2591 transcriptional regulator, BadM/Rrf2 family (RefSeq) 0.36 DvMF_2122 nicotinate-nucleotide/dimethylbenzimidazole phosphoribosyltransferase (RefSeq) low > 51
Fusobacterium nucleatum SB010 0.24 HUW76_04175 Rrf2 family transcriptional regulator 0.28 HUW76_05630 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase low > 35
Rhizobium sp. OAE497 0.23 ABIE40_RS15020 Rrf2 family transcriptional regulator 0.28 ABIE40_RS10720 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase low > 107
Agrobacterium fabrum C58 0.22 Atu3423 hypothetical protein 0.25 Atu1890 cobyrinic acid synthase — —

Not shown: 17 genomes with orthologs for Shewana3_2281 only; 27 genomes with orthologs for Shewana3_3278 only