Conservation of cofitness between Shewana3_2684 and Shewana3_3143 in Shewanella sp. ANA-3

54 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Shewanella sp. ANA-3 1.0 Shewana3_2684 gluconate transporter (RefSeq) 1.0 Shewana3_3143 hypothetical protein (RefSeq) 0.43 3
Shewanella oneidensis MR-1 0.94 SO1771 permease, GntP family (NCBI ptt file) 0.91 SO3540 conserved hypothetical protein (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.87 Shew_2533 gluconate transporter (RefSeq) 0.72 Shew_1093 hypothetical protein (RefSeq) low > 60
Vibrio cholerae E7946 ATCC 55056 0.73 CSW01_18665 permease 0.66 CSW01_11930 peroxide stress protein YaaA low > 62
Echinicola vietnamensis KMM 6221, DSM 17526 0.35 Echvi_3768 H+/gluconate symporter and related permeases 0.47 Echvi_0335 Uncharacterized protein conserved in bacteria low > 79
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.24 GFF4777 Gluconate permease 0.57 GFF1081 UPF0246 protein YaaA low > 78
Escherichia coli ECOR38 0.23 HEPCGN_21660 dsdX D-serine transporter DsdX 0.57 HEPCGN_09095 yaaA peroxide stress protein YaaA low > 87
Escherichia fergusonii Becca 0.23 EFB2_01509 D-serine transporter DsdX 0.57 EFB2_04037 Peroxide stress resistance protein YaaA low > 86
Escherichia coli BW25113 0.22 b2365 dsdX predicted transporter (NCBI) 0.57 b0006 yaaA hypothetical protein (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.22 OHPLBJKB_01356 D-serine transporter DsdX 0.57 OHPLBJKB_03654 hypothetical protein low > 73
Escherichia coli BL21 0.22 ECD_02275 D-serine transporter 0.57 ECD_00006 peroxide resistance protein, lowers intracellular iron low > 61
Escherichia coli Nissle 1917 0.22 ECOLIN_RS13615 D-serine transporter DsdX 0.57 ECOLIN_RS00035 peroxide stress protein YaaA low > 55
Serratia liquefaciens MT49 0.22 IAI46_12630 D-serine transporter DsdX 0.58 IAI46_03045 peroxide stress protein YaaA low > 86
Klebsiella michiganensis M5al 0.21 BWI76_RS27855 D-serine transporter DsdX 0.57 BWI76_RS04260 peroxide stress protein YaaA low > 92
Enterobacter sp. TBS_079 0.21 MPMX20_00024 D-serine transporter DsdX 0.57 MPMX20_00714 Peroxide stress resistance protein YaaA low > 85
Enterobacter asburiae PDN3 0.21 EX28DRAFT_3965 gluconate transporter 0.56 EX28DRAFT_3618 Uncharacterized protein conserved in bacteria low > 76
Acidovorax sp. GW101-3H11 0.21 Ac3H11_3740 Gluconate permease 0.49 Ac3H11_1593 UPF0246 protein YaaA low > 79
Cupriavidus basilensis FW507-4G11 0.20 RR42_RS28835 gluconate:H+ symporter (gntT) (from data) 0.50 RR42_RS05780 hypothetical protein low > 128
Pseudomonas putida KT2440 0.20 PP_3417 D-gluconate transporter 0.62 PP_1289 conserved protein of unknown function, DUF328 family low > 96
Pseudomonas syringae pv. syringae B728a ΔmexB 0.20 Psyr_0463 Gluconate transporter 0.63 Psyr_1064 Protein of unknown function DUF328 low > 86
Pseudomonas syringae pv. syringae B728a 0.20 Psyr_0463 Gluconate transporter 0.63 Psyr_1064 Protein of unknown function DUF328 low > 86
Pseudomonas fluorescens GW456-L13 0.20 PfGW456L13_3649 D-serine permease (from data) 0.61 PfGW456L13_1686 UPF0246 protein YaaA low > 87
Pantoea sp. MT58 0.20 IAI47_07160 GntP family transporter 0.59 IAI47_16200 peroxide stress protein YaaA low > 76
Escherichia coli ECOR27 0.20 NOLOHH_12335 ygbN GntP family transporter 0.57 NOLOHH_03420 yaaA peroxide stress protein YaaA low > 75
Pseudomonas fluorescens FW300-N2E3 0.20 AO353_25205 permease DsdX 0.61 AO353_04675 hypothetical protein low > 101
Escherichia coli ECRC62 0.20 BNILDI_10885 ygbN GntP family transporter 0.57 BNILDI_08185 yaaA peroxide stress protein YaaA low > 75
Pectobacterium carotovorum WPP14 0.20 HER17_RS00545 GntP family transporter 0.58 HER17_RS02810 peroxide stress protein YaaA low > 75
Pseudomonas fluorescens SBW25-INTG 0.19 PFLU_RS11565 GntP family transporter 0.61 PFLU_RS04920 peroxide stress protein YaaA low > 109
Pseudomonas fluorescens SBW25 0.19 PFLU_RS11565 GntP family transporter 0.61 PFLU_RS04920 peroxide stress protein YaaA low > 109
Pseudomonas fluorescens FW300-N1B4 0.19 Pf1N1B4_5074 Gluconate permease 0.61 Pf1N1B4_981 UPF0246 protein YaaA low > 87
Alteromonas macleodii MIT1002 0.19 MIT1002_03473 5-keto-D-gluconate transporter 0.60 MIT1002_03077 hypothetical protein low > 70
Ralstonia solanacearum GMI1000 0.19 RS_RS22870 permease 0.55 RS_RS10095 peroxide stress protein YaaA low > 80
Pseudomonas simiae WCS417 0.18 PS417_23605 permease DsdX 0.61 PS417_04850 hypothetical protein low > 88
Ralstonia solanacearum PSI07 0.18 RPSI07_RS05470 permease 0.54 RPSI07_RS14595 peroxide stress protein YaaA low > 81
Paraburkholderia sabiae LMG 24235 0.18 QEN71_RS26910 GntP family permease 0.53 QEN71_RS24000 peroxide stress protein YaaA low > 153
Pseudomonas fluorescens FW300-N2C3 0.18 AO356_07790 permease DsdX 0.58 AO356_17320 hypothetical protein low > 104
Pseudomonas fluorescens FW300-N2E2 0.18 Pf6N2E2_3441 Gluconate transporter family protein 0.58 Pf6N2E2_5389 UPF0246 protein YaaA low > 103
Pseudomonas sp. RS175 0.18 PFR28_00595 High-affinity gluconate transporter 0.60 PFR28_03554 Peroxide stress resistance protein YaaA low > 88
Burkholderia phytofirmans PsJN 0.18 BPHYT_RS13375 permease 0.54 BPHYT_RS06780 hypothetical protein — —
Ralstonia solanacearum UW163 0.18 UW163_RS20965 permease 0.54 UW163_RS11005 peroxide stress protein YaaA — —
Ralstonia solanacearum IBSBF1503 0.18 RALBFv3_RS18165 permease 0.54 RALBFv3_RS02720 peroxide stress protein YaaA low > 76
Paraburkholderia graminis OAS925 0.17 ABIE53_003515 GntP family gluconate:H+ symporter 0.54 ABIE53_001622 cytoplasmic iron level regulating protein YaaA (DUF328/UPF0246 family) low > 113
Ralstonia sp. UNC404CL21Col 0.17 ABZR87_RS19095 gluconate:H+ symporter 0.56 ABZR87_RS14635 peroxide stress protein YaaA low > 80
Paraburkholderia bryophila 376MFSha3.1 0.17 H281DRAFT_04276 gluconate permease GntT 0.53 H281DRAFT_04599 hypothetical protein low > 103
Dickeya dianthicola 67-19 0.17 HGI48_RS19890 gluconate transporter 0.57 HGI48_RS18330 peroxide stress protein YaaA low > 71
Dickeya dianthicola ME23 0.17 DZA65_RS20960 gluconate transporter 0.57 DZA65_RS19470 peroxide stress protein YaaA low > 75
Dickeya dadantii 3937 0.17 DDA3937_RS19775 gluconate transporter 0.57 DDA3937_RS18400 peroxide stress protein YaaA low > 74
Escherichia coli ECRC102 0.16 NIAGMN_14755 gntT gluconate transporter 0.57 NIAGMN_08940 yaaA peroxide stress protein YaaA — —
Escherichia coli ECRC99 0.16 KEDOAH_11155 gntT gluconate transporter 0.57 KEDOAH_17065 yaaA peroxide stress protein YaaA — —
Escherichia coli ECRC98 0.16 JDDGAC_20615 gntT gluconate transporter 0.57 JDDGAC_14685 yaaA peroxide stress protein YaaA low > 86
Escherichia coli ECRC100 0.16 OKFHMN_16985 gntT gluconate transporter 0.57 OKFHMN_11090 yaaA peroxide stress protein YaaA low > 80
Escherichia coli ECRC101 0.16 MCAODC_07515 gntT gluconate transporter 0.57 MCAODC_01605 yaaA peroxide stress protein YaaA low > 87
Rahnella sp. WP5 0.16 EX31_RS16635 gluconate transporter 0.55 EX31_RS03930 peroxide stress protein YaaA low > 89
Erwinia tracheiphila SCR3 0.15 LU632_RS19170 gntU gluconate transporter 0.58 LU632_RS02625 yaaA peroxide stress protein YaaA low > 74
Variovorax sp. SCN45 0.14 GFF1885 Gluconate transporter family protein 0.46 GFF6020 UPF0246 protein YaaA low > 127

Not shown: 6 genomes with orthologs for Shewana3_2684 only; 20 genomes with orthologs for Shewana3_3143 only