Conservation of cofitness between Shewana3_3019 and Shewana3_0390 in Shewanella sp. ANA-3

54 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Shewanella sp. ANA-3 1.0 Shewana3_3019 cytochrome c assembly protein (RefSeq) 1.0 Shewana3_0390 diaminopimelate decarboxylase (RefSeq) 0.63 3
Shewanella oneidensis MR-1 0.99 SO1355 membrane protein, putative (NCBI ptt file) 0.96 SO4309 lysA diaminopimelate decarboxylase (NCBI ptt file) 0.42 55
Shewanella amazonensis SB2B 0.85 Sama_0887 hypothetical protein (RefSeq) 0.82 Sama_3250 diaminopimelate decarboxylase (RefSeq) low > 62
Shewanella loihica PV-4 0.84 Shew_1061 cytochrome c assembly protein (RefSeq) 0.83 Shew_0322 diaminopimelate decarboxylase (RefSeq) — —
Vibrio cholerae E7946 ATCC 55056 0.37 CSW01_02985 inner membrane protein YpjD 0.71 CSW01_00635 diaminopimelate decarboxylase low > 62
Pantoea sp. MT58 0.37 IAI47_04365 inner membrane protein YpjD 0.16 IAI47_03860 diaminopimelate decarboxylase 0.44 72
Serratia liquefaciens MT49 0.37 IAI46_03910 inner membrane protein YpjD 0.19 IAI46_20520 diaminopimelate decarboxylase low > 86
Rahnella sp. WP5 0.36 EX31_RS07735 inner membrane protein YpjD 0.21 EX31_RS02420 type III PLP-dependent enzyme low > 89
Escherichia coli Nissle 1917 0.36 ECOLIN_RS14755 inner membrane protein YpjD 0.19 ECOLIN_RS15930 diaminopimelate decarboxylase low > 52
Escherichia coli ECRC98 0.36 JDDGAC_24830 ypjD Inner membrane protein YpjD 0.19 JDDGAC_23610 lysA diaminopimelate decarboxylase — —
Escherichia coli ECRC101 0.36 OKFHMN_21165 ypjD Inner membrane protein YpjD 0.19 OKFHMN_19945 lysA diaminopimelate decarboxylase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.36 OHPLBJKB_01095 Inner membrane protein YpjD 0.19 OHPLBJKB_00891 Diaminopimelate decarboxylase low > 73
Escherichia coli ECOR27 0.36 NOLOHH_12840 ypjD Inner membrane protein YpjD 0.19 NOLOHH_11830 lysA diaminopimelate decarboxylase low > 57
Escherichia coli ECRC101 0.36 MCAODC_11695 ypjD Inner membrane protein YpjD 0.19 MCAODC_10470 lysA diaminopimelate decarboxylase — —
Escherichia coli BL21 0.36 ECD_02500 cytochrome c assembly protein family inner membrane protein 0.19 ECD_02686 diaminopimelate decarboxylase, PLP-binding low > 60
Escherichia coli ECRC102 0.36 NIAGMN_18935 ypjD Inner membrane protein YpjD 0.19 NIAGMN_17715 lysA diaminopimelate decarboxylase — —
Escherichia coli ECRC62 0.36 BNILDI_11645 ypjD Inner membrane protein YpjD 0.19 BNILDI_10310 lysA diaminopimelate decarboxylase — —
Escherichia coli ECOR38 0.36 HEPCGN_20285 ypjD Inner membrane protein YpjD 0.19 HEPCGN_19565 lysA diaminopimelate decarboxylase low > 85
Klebsiella michiganensis M5al 0.36 BWI76_RS21535 inner membrane protein YpjD 0.19 BWI76_RS23360 diaminopimelate decarboxylase low > 92
Escherichia coli BW25113 0.36 b2611 ypjD predicted inner membrane protein (RefSeq) 0.19 b2838 lysA diaminopimelate decarboxylase, PLP-binding (NCBI) 0.49 7
Escherichia coli ECRC99 0.36 KEDOAH_07055 ypjD Inner membrane protein YpjD 0.19 KEDOAH_08185 lysA diaminopimelate decarboxylase — —
Escherichia fergusonii Becca 0.36 EFB2_01281 Inner membrane protein YpjD 0.19 EFB2_01045 Diaminopimelate decarboxylase low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.35 GFF4167 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) 0.19 GFF1925 Diaminopimelate decarboxylase (EC 4.1.1.20) low > 78
Enterobacter sp. TBS_079 0.34 MPMX20_03481 Inner membrane protein YpjD 0.18 MPMX20_03705 Diaminopimelate decarboxylase low > 85
Enterobacter asburiae PDN3 0.34 EX28DRAFT_2714 ABC-type uncharacterized transport system, permease component 0.19 EX28DRAFT_2916 diaminopimelate decarboxylase low > 76
Alteromonas macleodii MIT1002 0.34 MIT1002_01295 Inner membrane protein YpjD 0.69 MIT1002_00160 Diaminopimelate decarboxylase low > 70
Pectobacterium carotovorum WPP14 0.34 HER17_RS05105 inner membrane protein YpjD 0.17 HER17_RS03710 diaminopimelate decarboxylase low > 75
Erwinia tracheiphila SCR3 0.33 LU632_RS15675 inner membrane protein YpjD 0.17 LU632_RS06040 lysA diaminopimelate decarboxylase low > 74
Dickeya dianthicola ME23 0.32 DZA65_RS17390 inner membrane protein YpjD 0.22 DZA65_RS00505 type III PLP-dependent enzyme low > 75
Dickeya dianthicola 67-19 0.32 HGI48_RS16295 inner membrane protein YpjD 0.22 HGI48_RS00505 type III PLP-dependent enzyme low > 71
Dickeya dadantii 3937 0.32 DDA3937_RS16185 inner membrane protein YpjD 0.22 DDA3937_RS20740 type III PLP-dependent enzyme low > 74
Pseudomonas putida KT2440 0.21 PP_1460 putative Membrane protein 0.64 PP_5227 diaminopimelate decarboxylase low > 96
Pseudomonas fluorescens FW300-N2E3 0.21 AO353_04395 cytochrome C assembly protein 0.62 AO353_09035 diaminopimelate decarboxylase — —
Pseudomonas sp. RS175 0.21 PFR28_00325 Inner membrane protein YpjD 0.63 PFR28_04375 Diaminopimelate decarboxylase — —
Marinobacter adhaerens HP15 0.21 HP15_756 cytochrome c assembly protein 0.69 HP15_247 diaminopimelate decarboxylase — —
Pseudomonas stutzeri RCH2 0.20 Psest_3135 ABC-type uncharacterized transport system, permease component 0.62 Psest_3764 diaminopimelate decarboxylase — —
Pseudomonas sp. S08-1 0.20 OH686_17715 Inner membrane protein YpjD 0.61 OH686_13800 diaminopimelate decarboxylase low > 80
Acinetobacter radioresistens SK82 0.20 MPMX26_02469 Inner membrane protein YpjD 0.60 MPMX26_02232 Diaminopimelate decarboxylase low > 36
Dechlorosoma suillum PS 0.20 Dsui_1321 ABC-type uncharacterized transport system, permease component 0.58 Dsui_1182 diaminopimelate decarboxylase — —
Pseudomonas fluorescens SBW25 0.20 PFLU_RS24590 cytochrome c assembly protein 0.62 PFLU_RS29265 diaminopimelate decarboxylase low > 109
Pseudomonas fluorescens SBW25-INTG 0.20 PFLU_RS24590 cytochrome c assembly protein 0.62 PFLU_RS29265 diaminopimelate decarboxylase — —
Pseudomonas fluorescens GW456-L13 0.20 PfGW456L13_1714 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) 0.64 PfGW456L13_845 Diaminopimelate decarboxylase (EC 4.1.1.20) low > 87
Pseudomonas simiae WCS417 0.20 PS417_22930 cytochrome C assembly protein 0.61 PS417_27580 diaminopimelate decarboxylase — —
Pseudomonas fluorescens FW300-N2E2 0.19 Pf6N2E2_3151 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) 0.63 Pf6N2E2_4419 Diaminopimelate decarboxylase (EC 4.1.1.20) — —
Pseudomonas fluorescens FW300-N2C3 0.19 AO356_06415 cytochrome C assembly protein 0.63 AO356_12740 diaminopimelate decarboxylase — —
Pseudomonas fluorescens FW300-N1B4 0.18 Pf1N1B4_875 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) 0.64 Pf1N1B4_2174 Diaminopimelate decarboxylase (EC 4.1.1.20) — —
Pseudomonas syringae pv. syringae B728a 0.17 Psyr_1280 Cytochrome c assembly protein 0.63 Psyr_0182 diaminopimelate decarboxylase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.17 Psyr_1280 Cytochrome c assembly protein 0.63 Psyr_0182 diaminopimelate decarboxylase — —
Kangiella aquimarina DSM 16071 0.16 B158DRAFT_2259 ABC-type uncharacterized transport system, permease component 0.18 B158DRAFT_0272 pyridoxal-dependent decarboxylase, exosortase A system-associated — —
Herbaspirillum seropedicae SmR1 0.16 HSERO_RS01870 ABC transporter permease 0.54 HSERO_RS00950 diaminopimelate decarboxylase — —
Variovorax sp. OAS795 0.14 ABID97_RS06430 cytochrome c biogenesis protein CcsA 0.53 ABID97_RS23305 diaminopimelate decarboxylase — —
Castellaniella sp019104865 MT123 0.13 ABCV34_RS09015 cytochrome c biogenesis protein CcsA 0.54 ABCV34_RS12685 diaminopimelate decarboxylase — —
Acidovorax sp. GW101-3H11 0.13 Ac3H11_4016 CcsA-related protein 0.19 Ac3H11_3862 Diaminopimelate decarboxylase (EC 4.1.1.20) — —
Variovorax sp. SCN45 0.13 GFF4429 Inner membrane protein YpjD 0.53 GFF5315 Diaminopimelate decarboxylase (EC 4.1.1.20) — —
Ralstonia solanacearum GMI1000 0.11 RS_RS14050 inner membrane protein YpjD 0.57 RS_RS14930 diaminopimelate decarboxylase — —

Not shown: 0 genomes with orthologs for Shewana3_3019 only; 46 genomes with orthologs for Shewana3_0390 only