Conservation of cofitness between Sama_0857 and Sama_3171 in Shewanella amazonensis SB2B

48 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Shewanella amazonensis SB2B 1.0 Sama_0857 gltB glutamate synthase subunit alpha (RefSeq) 1.0 Sama_3171 cystathionine gamma-synthase (RefSeq) 0.84 13
Shewanella oneidensis MR-1 0.89 SO1325 gltB glutamate synthase, large subunit (NCBI ptt file) 0.87 SO4056 metB cystathionine gamma-synthase (NCBI ptt file) 0.84 53
Shewanella sp. ANA-3 0.89 Shewana3_3050 gltB glutamate synthase subunit alpha (RefSeq) 0.89 Shewana3_3614 cystathionine gamma-synthase (RefSeq) 0.93 2
Shewanella loihica PV-4 0.85 Shew_1032 gltB glutamate synthase subunit alpha (RefSeq) 0.84 Shew_0520 O-succinylhomoserine (thiol)-lyase (RefSeq) 0.98 23
Serratia liquefaciens MT49 0.67 IAI46_22345 glutamate synthase large subunit 0.60 IAI46_24540 cystathionine gamma-synthase low > 86
Vibrio cholerae E7946 ATCC 55056 0.67 CSW01_12030 glutamate synthase large subunit 0.60 CSW01_13550 O-succinylhomoserine (thiol)-lyase low > 62
Rahnella sp. WP5 0.67 EX31_RS12515 glutamate synthase large subunit 0.58 EX31_RS14215 cystathionine gamma-synthase 0.97 18
Pectobacterium carotovorum WPP14 0.67 HER17_RS19910 glutamate synthase large subunit 0.61 HER17_RS00910 cystathionine gamma-synthase low > 75
Erwinia tracheiphila SCR3 0.66 LU632_RS21315 gltB glutamate synthase large subunit 0.59 LU632_RS19640 metB cystathionine gamma-synthase 0.78 38
Dickeya dianthicola 67-19 0.66 HGI48_RS01560 glutamate synthase large subunit 0.59 HGI48_RS20425 cystathionine gamma-synthase 0.82 26
Dickeya dadantii 3937 0.66 DDA3937_RS01665 glutamate synthase large subunit 0.59 DDA3937_RS00950 cystathionine gamma-synthase 0.97 3
Dickeya dianthicola ME23 0.66 DZA65_RS01635 glutamate synthase large subunit 0.59 DZA65_RS21470 cystathionine gamma-synthase 0.95 5
Escherichia coli ECOR38 0.66 HEPCGN_16760 gltB3 Glutamate synthase domain 3 0.60 HEPCGN_12345 metB cystathionine gamma-synthase 0.94 18
Escherichia coli Nissle 1917 0.66 ECOLIN_RS18475 glutamate synthase large subunit 0.60 ECOLIN_RS22725 cystathionine gamma-synthase low > 55
Escherichia fergusonii Becca 0.66 EFB2_00611 Glutamate synthase [NADPH] large chain 0.60 EFB2_04679 Cystathionine gamma-synthase low > 86
Escherichia coli BL21 0.66 ECD_03077 glutamate synthase, large subunit 0.60 ECD_03825 cystathionine gamma-synthase, PLP-dependent 0.59 44
Escherichia coli BW25113 0.66 b3212 gltB glutamate synthase, large subunit (NCBI) 0.60 b3939 metB cystathionine gamma-synthase (NCBI) low > 76
Escherichia coli ECRC62 0.66 BNILDI_01850 gltB glutamate synthase large subunit 0.60 BNILDI_05715 metB cystathionine gamma-synthase 0.93 31
Escherichia coli ECRC100 0.66 OKFHMN_17885 gltB glutamate synthase large subunit 0.60 OKFHMN_13675 metB cystathionine gamma-synthase 0.91 41
Escherichia coli HS(pFamp)R (ATCC 700891) 0.66 OHPLBJKB_00488 Glutamate synthase [NADPH] large chain 0.60 OHPLBJKB_04111 Cystathionine gamma-synthase low > 73
Escherichia coli ECRC98 0.66 JDDGAC_21510 gltB glutamate synthase large subunit 0.60 JDDGAC_17300 metB cystathionine gamma-synthase 0.94 18
Escherichia coli ECRC101 0.66 MCAODC_08405 gltB glutamate synthase large subunit 0.60 MCAODC_04175 metB cystathionine gamma-synthase low > 87
Escherichia coli ECRC102 0.66 NIAGMN_15645 gltB glutamate synthase large subunit 0.60 NIAGMN_11430 metB cystathionine gamma-synthase — —
Klebsiella michiganensis M5al 0.66 BWI76_RS25315 glutamate synthase large subunit 0.60 BWI76_RS00785 cystathionine gamma-synthase 0.69 7
Escherichia coli ECOR27 0.66 NOLOHH_09685 gltB glutamate synthase large subunit 0.60 NOLOHH_05820 metB cystathionine gamma-synthase 0.93 20
Escherichia coli ECRC99 0.66 KEDOAH_10265 gltB glutamate synthase large subunit 0.60 KEDOAH_14485 metB cystathionine gamma-synthase — —
Enterobacter sp. TBS_079 0.66 MPMX20_04126 Glutamate synthase [NADPH] large chain 0.60 MPMX20_04531 Cystathionine gamma-synthase 0.65 26
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.66 GFF2956 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) 0.60 GFF2323 Cystathionine gamma-synthase (EC 2.5.1.48) low > 78
Enterobacter asburiae PDN3 0.66 EX28DRAFT_3275 Glutamate synthase domain 2 0.60 EX28DRAFT_4411 cystathionine gamma-synthase (EC 2.5.1.48) 0.68 37
Pseudomonas fluorescens FW300-N2E3 0.58 AO353_12515 glutamate synthase 0.44 AO353_23295 cystathionine beta-lyase low > 101
Pseudomonas putida KT2440 0.58 PP_5076 L-glutamate synthase(NADPH) alpha subunit 0.35 PP_4594 putative Cystathionine gamma-synthase low > 96
Pseudomonas fluorescens SBW25-INTG 0.58 PFLU_RS02045 glutamate synthase large subunit 0.42 PFLU_RS16625 cystathionine gamma-synthase low > 109
Pseudomonas fluorescens SBW25 0.58 PFLU_RS02045 glutamate synthase large subunit 0.42 PFLU_RS16625 cystathionine gamma-synthase low > 109
Pseudomonas fluorescens FW300-N1B4 0.57 Pf1N1B4_1534 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) 0.43 Pf1N1B4_4890 Cystathionine gamma-lyase (EC 4.4.1.1) low > 87
Xanthomonas campestris pv. campestris strain 8004 0.51 Xcc-8004.44.1 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) 0.63 Xcc-8004.1596.1 hypothetical protein low > 74
Rhodanobacter denitrificans MT42 0.50 LRK55_RS10665 glutamate synthase large subunit 0.63 LRK55_RS05085 cystathionine gamma-synthase low > 63
Rhodanobacter denitrificans FW104-10B01 0.50 LRK54_RS10960 glutamate synthase large subunit 0.63 LRK54_RS05305 cystathionine gamma-synthase 0.82 21
Dyella japonica UNC79MFTsu3.2 0.50 ABZR86_RS16795 glutamate synthase large subunit 0.63 ABZR86_RS19030 cystathionine gamma-synthase 0.90 23
Rhodopseudomonas palustris CGA009 0.41 TX73_004590 glutamate synthase large subunit 0.36 TX73_012185 PLP-dependent aspartate aminotransferase family protein — —
Dechlorosoma suillum PS 0.40 Dsui_1096 glutamate synthase family protein 0.38 Dsui_2042 cystathionine beta-lyase/cystathionine gamma-synthase low > 51
Pedobacter sp. GW460-11-11-14-LB5 0.40 CA265_RS08700 glutamate synthase large subunit 0.42 CA265_RS06375 cystathionine gamma-synthase low > 88
Rhodospirillum rubrum S1H 0.40 Rru_A0019 Glutamate synthase (ferredoxin) (NCBI) 0.38 Rru_A0786 Cystathionine gamma-synthase (NCBI) — —
Sinorhizobium meliloti 1021 0.40 SMc04028 glutamate synthase 0.48 SMc02595 cystathionine gamma-synthase low > 103
Mucilaginibacter yixingensis YX-36 DSM 26809 0.40 ABZR88_RS06905 glutamate synthase large subunit 0.40 ABZR88_RS06685 cystathionine gamma-synthase low > 71
Rhodanobacter sp. FW510-T8 0.39 OKGIIK_15200 Glutamate synthase subunit alpha 0.61 OKGIIK_01515 metB cystathionine gamma-synthase low > 52
Mycobacterium tuberculosis H37Rv 0.39 Rv3859c Probable ferredoxin-dependent glutamate synthase [NADPH] (large subunit) GltB (L-glutamate synthase) (L-glutamate synthetase) (NADH-glutamate synthase) (glutamate synthase (NADH))(NADPH-GOGAT) 0.40 Rv1079 Cystathionine gamma-synthase MetB (CGS) (O-succinylhomoserine [thiol]-lyase) — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.39 Echvi_1244 Glutamate synthase domain 2 0.42 Echvi_2080 Cystathionine beta-lyases/cystathionine gamma-synthases low > 79
Bifidobacterium breve UCC2003 0.37 BBR_RS15255 glutamate synthase large subunit 0.40 BBR_RS13145 cystathionine gamma-synthase low > 34
Brevundimonas sp. GW460-12-10-14-LB2 0.37 A4249_RS16105 glutamate synthase large subunit 0.58 A4249_RS16160 cystathionine gamma-synthase 0.99 15

Not shown: 44 genomes with orthologs for Sama_0857 only; 4 genomes with orthologs for Sama_3171 only