Conservation of cofitness between Shew_1424 and Shew_2203 in Shewanella loihica PV-4

59 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Shewanella loihica PV-4 1.0 Shew_1424 TrkA domain-containing protein (RefSeq) 1.0 Shew_2203 imidazole glycerol phosphate synthase subunit HisF (RefSeq) 0.87 20
Kangiella aquimarina DSM 16071 0.43 B158DRAFT_2362 Di- and tricarboxylate transporters 0.37 B158DRAFT_2291 imidazoleglycerol phosphate synthase, cyclase subunit low > 40
Alteromonas macleodii MIT1002 0.43 MIT1002_01270 putative transporter 0.73 MIT1002_02638 Imidazole glycerol phosphate synthase subunit HisF
Shewanella amazonensis SB2B 0.34 Sama_2889 putative sodium/sulfate symporter (RefSeq) 0.83 Sama_1947 imidazole glycerol phosphate synthase subunit HisF (RefSeq) 0.94 32
Shewanella sp. ANA-3 0.34 Shewana3_0865 TrkA domain-containing protein (RefSeq) 0.86 Shewana3_1848 imidazole glycerol phosphate synthase subunit HisF (RefSeq) 0.85 20
Marinobacter adhaerens HP15 0.26 HP15_2526 sodium/sulfate symporter 0.35 HP15_3009 protein containing histidine biosynthesis, HisF domain
Pseudomonas stutzeri RCH2 0.20 Psest_3684 Di- and tricarboxylate transporters 0.38 Psest_0156 imidazoleglycerol phosphate synthase, cyclase subunit
Pontibacter actiniarum KMM 6156, DSM 19842 0.20 CA264_17380 SLC13 family permease 0.42 CA264_05110 imidazole glycerol phosphate synthase cyclase subunit low > 74
Synechocystis sp000284455 PCC 6803 0.19 SGL_RS03935 SLC13 family permease 0.36 SGL_RS10250 imidazole glycerol phosphate synthase subunit HisF
Pseudomonas segetis P6 0.19 ACVTMO_RS20950 SLC13 family permease 0.35 ACVTMO_RS21320 hisF imidazole glycerol phosphate synthase subunit HisF 0.52 32
Echinicola vietnamensis KMM 6221, DSM 17526 0.17 Echvi_3000 Di- and tricarboxylate transporters 0.41 Echvi_2516 imidazoleglycerol phosphate synthase, cyclase subunit low > 79
Bacteroides thetaiotaomicron VPI-5482 0.17 BT0539 putative Na+/sulphate transporter (NCBI ptt file) 0.39 BT1378 imidazole glycerol phosphate synthase subunit hisF (NCBI ptt file) low > 81
Bacteroides ovatus ATCC 8483 0.17 BACOVA_03774 TrkA C-terminal domain protein 0.41 BACOVA_00219 imidazoleglycerol phosphate synthase, cyclase subunit low > 96
Sphingobium sp. HT1-2 0.17 GFF802 Sulfate permease, Trk-type 0.30 GFF3062 Imidazole glycerol phosphate synthase cyclase subunit low > 95
Phocaeicola vulgatus CL09T03C04 0.16 HMPREF1058_RS16265 SLC13 family permease 0.42 HMPREF1058_RS06175 imidazole glycerol phosphate synthase subunit HisF low > 67
Phocaeicola dorei CL03T12C01 0.16 ABI39_RS12155 SLC13 family permease 0.43 ABI39_RS19930 imidazole glycerol phosphate synthase subunit HisF low > 72
Phaeobacter inhibens DSM 17395 0.16 PGA1_c21800 putative transporter 0.34 PGA1_c09240 imidazole glycerol phosphate synthase subunit HisF
Dinoroseobacter shibae DFL-12 0.15 Dshi_2766 TrkA-C domain protein (RefSeq) 0.36 Dshi_2576 imidazoleglycerol phosphate synthase, cyclase subunit (RefSeq)
Enterobacter sp. TBS_079 0.15 MPMX20_03222 hypothetical protein 0.75 MPMX20_03007 Imidazole glycerol phosphate synthase subunit HisF low > 85
Erwinia tracheiphila HP pepo 2.2 0.14 IJEDHG_18025 SLC13 family permease 0.73 IJEDHG_19065 hisF imidazole glycerol phosphate synthase subunit HisF low > 61
Azospirillum sp. SherDot2 0.14 MPMX19_03718 hypothetical protein 0.34 MPMX19_02542 Imidazole glycerol phosphate synthase subunit HisF
Erwinia tracheiphila SCR3 0.14 LU632_RS07945 SLC13 family permease 0.73 LU632_RS08920 hisF imidazole glycerol phosphate synthase subunit HisF low > 73
Bosea sp. OAE506 0.14 ABIE41_RS22285 SLC13 family permease 0.31 ABIE41_RS03810 imidazole glycerol phosphate synthase subunit HisF
Escherichia coli HS(pFamp)R (ATCC 700891) 0.14 OHPLBJKB_01413 hypothetical protein 0.75 OHPLBJKB_01675 Imidazole glycerol phosphate synthase subunit HisF low > 74
Magnetospirillum magneticum AMB-1 0.14 AMB_RS07210 permease 0.33 AMB_RS22925 imidazole glycerol phosphate synthase cyclase subunit
Klebsiella pneumoniae MKP103 0.14 KDGMDA_27090 SLC13 family permease 0.76 KDGMDA_26120 Imidazole glycerol phosphate synthase subunit HisF low > 95
Klebsiella michiganensis M5al 0.14 BWI76_RS20215 transcriptional regulator 0.75 BWI76_RS18950 imidazole glycerol phosphate synthase cyclase subunit low > 92
Lysobacter sp. OAE881 0.14 ABIE51_RS00835 SLC13 family permease 0.59 ABIE51_RS13300 imidazole glycerol phosphate synthase subunit HisF low > 62
Dickeya dadantii 3937 0.13 DDA3937_RS14355 SLC13 family permease 0.75 DDA3937_RS09710 imidazole glycerol phosphate synthase subunit HisF low > 74
Dickeya dianthicola 67-19 0.13 HGI48_RS14330 SLC13 family permease 0.74 HGI48_RS09720 imidazole glycerol phosphate synthase subunit HisF
Pseudomonas sp. BP01 0.13 JOY50_RS03925 SLC13 family permease 0.36 JOY50_RS25520 hisF imidazole glycerol phosphate synthase subunit HisF low > 84
Sinorhizobium meliloti 1021 0.13 SMc04179 transmembrane protein 0.34 SMc02569 imidazole glycerol phosphate synthase subunit HisF low > 103
Enterobacter asburiae PDN3 0.13 EX28DRAFT_0317 Di- and tricarboxylate transporters 0.74 EX28DRAFT_0534 imidazoleglycerol phosphate synthase, cyclase subunit low > 76
Azospirillum brasilense Sp245 0.13 AZOBR_RS19705 permease 0.35 AZOBR_RS01685 imidazole glycerol phosphate synthase low > 97
Sphingomonas koreensis DSMZ 15582 0.13 Ga0059261_3372 Di- and tricarboxylate transporters 0.30 Ga0059261_1048 imidazoleglycerol phosphate synthase, cyclase subunit 0.43 42
Pseudomonas sp. SVBP6 0.13 COO64_RS08470 SLC13 family permease 0.35 COO64_RS00210 hisF imidazole glycerol phosphate synthase subunit HisF low > 93
Pseudomonas putida KT2440 0.13 PP_3931 putative transporter 0.36 PP_0293 Imidazole glycerol phosphate synthase subunit HisF low > 96
Agrobacterium fabrum C58 0.13 Atu4475 transporter 0.34 Atu0039 imidazoleglycerol-phosphate synthase cyclase low > 89
Escherichia coli BW25113 0.13 b2292 yfbS predicted transporter (NCBI) 0.75 b2025 hisF imidazole glycerol phosphate synthase subunit HisF (NCBI) low > 76
Escherichia coli ECOR27 0.13 NOLOHH_14435 yfbS Uncharacterized transporter YfbS 0.75 NOLOHH_15805 hisF Imidazole glycerol phosphate synthase subunit HisF low > 76
Escherichia coli ECRC98 0.13 JDDGAC_26780 yfbS Uncharacterized transporter YfbS 0.75 JDDGAC_28600 hisF Imidazole glycerol phosphate synthase subunit HisF low > 87
Escherichia coli ECRC101 0.13 MCAODC_13855 yfbS Uncharacterized transporter YfbS 0.75 MCAODC_20450 hisF Imidazole glycerol phosphate synthase subunit HisF low > 87
Escherichia coli BL21 0.13 ECD_02217 putative transporter 0.75 ECD_01927 imidazole glycerol phosphate synthase, catalytic subunit with HisH
Escherichia coli ECOR38 0.13 HEPCGN_22020 yfbS Uncharacterized transporter YfbS 0.75 HEPCGN_03195 hisF Imidazole glycerol phosphate synthase subunit HisF low > 88
Escherichia coli Nissle 1917 0.13 ECOLIN_RS13305 SLC13 family permease 0.76 ECOLIN_RS11970 imidazole glycerol phosphate synthase subunit HisF low > 55
Escherichia coli ECRC102 0.13 NIAGMN_20585 yfbS Uncharacterized transporter YfbS 0.75 NIAGMN_22435 hisF Imidazole glycerol phosphate synthase subunit HisF low > 80
Escherichia coli ECRC62 0.13 BNILDI_13355 yfbS Uncharacterized transporter YfbS 0.75 BNILDI_14715 hisF Imidazole glycerol phosphate synthase subunit HisF low > 75
Escherichia coli ECRC99 0.13 KEDOAH_05380 yfbS Uncharacterized transporter YfbS 0.75 KEDOAH_03660 hisF Imidazole glycerol phosphate synthase subunit HisF
Escherichia coli ECRC100 0.13 OKFHMN_22815 yfbS Uncharacterized transporter YfbS 0.75 OKFHMN_24490 hisF Imidazole glycerol phosphate synthase subunit HisF
Xanthomonas campestris pv. campestris strain 8004 0.13 Xcc-8004.825.1 sulfur deprivation response regulator 0.59 Xcc-8004.2943.1 Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-) low > 74
Escherichia fergusonii Becca 0.13 EFB2_01566 hypothetical protein 0.75 EFB2_01831 Imidazole glycerol phosphate synthase subunit HisF low > 86
Serratia liquefaciens MT49 0.12 IAI46_17730 SLC13 family permease 0.74 IAI46_08185 imidazole glycerol phosphate synthase subunit HisF low > 87
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.12 GFF1896 Putative transport protein 0.73 GFF3907 Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-) low > 78
Rahnella sp. WP5 0.12 EX31_RS19455 TRAP transporter large permease subunit 0.75 EX31_RS11465 imidazole glycerol phosphate synthase subunit HisF low > 89
Pectobacterium carotovorum WPP14 0.12 HER17_RS07105 SLC13 family permease 0.74 HER17_RS12255 imidazole glycerol phosphate synthase subunit HisF low > 75
Pseudomonas aeruginosa MRSN321 0.11 DY961_RS13680 SLC13 family permease 0.37 DY961_RS11530 hisF;go_function=imidazoleglycerol-phosphate imidazole glycerol phosphate synthase subunit HisF low > 100
Pseudomonas aeruginosa PUPa3 0.11 DQ20_RS48960 SLC13 family permease 0.37 DQ20_RS50570 hisF;go_function=imidazoleglycerol-phosphate imidazole glycerol phosphate synthase subunit HisF low > 101
Pseudomonas aeruginosa PA14 0.11 IKLFDK_19775 SLC13 family permease 0.37 IKLFDK_27805 Imidazole glycerol phosphate synthase subunit HisF low > 98
Rhizobium sp. OAE497 0.11 ABIE40_RS15340 SLC13 family permease 0.34 ABIE40_RS19440 imidazole glycerol phosphate synthase subunit HisF low > 107
Rhodospirillum rubrum S1H 0.10 Rru_A3404 trkA-C domain protein (NCBI) 0.34 Rru_A3594 Histidine biosynthesis protein HisF (NCBI) low > 58

Not shown: 0 genomes with orthologs for Shew_1424 only; 62 genomes with orthologs for Shew_2203 only