Conservation of cofitness between BT3918 and BT1970 in Bacteroides thetaiotaomicron VPI-5482

55 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Bacteroides thetaiotaomicron VPI-5482 1.0 BT3918 pyridoxal phosphate biosynthetic protein pdxJ (NCBI ptt file) 1.0 BT1970 glutamate dehydrogenase (NCBI ptt file) 0.81 18
Bacteroides ovatus ATCC 8483 0.97 BACOVA_01142 pyridoxine 5'-phosphate synthase 0.99 BACOVA_00094 NAD(P)-specific glutamate dehydrogenase 0.82 4
Bacteroides stercoris CC31F 0.93 HMPREF1181_RS06645 pyridoxine 5'-phosphate synthase 0.94 HMPREF1181_RS07835 NADP-specific glutamate dehydrogenase — —
Phocaeicola dorei CL03T12C01 0.87 ABI39_RS02500 pyridoxine 5'-phosphate synthase 0.95 ABI39_RS01300 NADP-specific glutamate dehydrogenase 0.75 24
Phocaeicola vulgatus CL09T03C04 0.87 HMPREF1058_RS08325 pyridoxine 5'-phosphate synthase 0.95 HMPREF1058_RS02115 NADP-specific glutamate dehydrogenase 0.87 7
Parabacteroides merdae CL09T00C40 0.72 HMPREF1078_RS10265 pyridoxine 5'-phosphate synthase 0.88 HMPREF1078_RS13375 NADP-specific glutamate dehydrogenase low > 61
Pontibacter actiniarum KMM 6156, DSM 19842 0.62 CA264_15275 pyridoxine 5'-phosphate synthase 0.19 CA264_17875 amino acid dehydrogenase — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.62 ABZR88_RS01795 pyridoxine 5'-phosphate synthase 0.16 ABZR88_RS10400 Glu/Leu/Phe/Val dehydrogenase — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.44 GFF3349 Pyridoxine 5'-phosphate synthase (EC 2.6.99.2) 0.61 GFF5486 NADP-specific glutamate dehydrogenase (EC 1.4.1.4) — —
Acidovorax sp. GW101-3H11 0.43 Ac3H11_1563 Pyridoxine 5'-phosphate synthase (EC 2.6.99.2) 0.61 Ac3H11_315 NADP-specific glutamate dehydrogenase (EC 1.4.1.4) — —
Sinorhizobium meliloti 1021 0.41 SMc01407 pyridoxine 5'-phosphate synthase 0.55 SMa0228 glutamate dehydrogenase — —
Variovorax sp. SCN45 0.40 GFF3873 Pyridoxine 5'-phosphate synthase (EC 2.6.99.2) 0.62 GFF3009 NADP-specific glutamate dehydrogenase (EC 1.4.1.4) — —
Variovorax sp. OAS795 0.39 ABID97_RS08380 pyridoxine 5'-phosphate synthase 0.21 ABID97_RS00235 Glu/Leu/Phe/Val dehydrogenase — —
Cupriavidus basilensis FW507-4G11 0.35 RR42_RS14025 pyridoxine 5'-phosphate synthase 0.61 RR42_RS33640 glutamate dehydrogenase — —
Burkholderia phytofirmans PsJN 0.34 BPHYT_RS14355 pyridoxine 5'-phosphate synthase 0.20 BPHYT_RS16705 glutamate dehydrogenase — —
Paraburkholderia bryophila 376MFSha3.1 0.33 H281DRAFT_04365 pyridoxine 5'-phosphate synthase 0.20 H281DRAFT_04271 glutamate dehydrogenase (NAD(P)+) — —
Paraburkholderia graminis OAS925 0.33 ABIE53_003033 pyridoxine 5-phosphate synthase 0.20 ABIE53_003511 glutamate dehydrogenase (NAD(P)+) — —
Escherichia coli ECOR38 0.33 HEPCGN_20570 pdxJ pyridoxine 5'-phosphate synthase 0.60 HEPCGN_05205 gdhA NADP-specific glutamate dehydrogenase low > 85
Paraburkholderia sabiae LMG 24235 0.33 QEN71_RS04625 pyridoxine 5'-phosphate synthase 0.21 QEN71_RS26890 Glu/Leu/Phe/Val dehydrogenase — —
Escherichia coli ECRC99 0.33 KEDOAH_06795 pdxJ pyridoxine 5'-phosphate synthase 0.60 KEDOAH_01270 gdhA NADP-specific glutamate dehydrogenase — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.33 GFF2472 'Pyridoxine 5'-phosphate synthase (EC 2.6.99.2)' transl_table=11 0.59 GFF3487 NADP-specific glutamate dehydrogenase (EC 1.4.1.4) — —
Escherichia coli BW25113 0.33 b2564 pdxJ pyridoxal phosphate biosynthetic protein (NCBI) 0.60 b1761 gdhA glutamate dehydrogenase (NCBI) low > 76
Escherichia coli ECOR27 0.33 NOLOHH_13100 pdxJ pyridoxine 5'-phosphate synthase 0.60 NOLOHH_17355 gdhA NADP-specific glutamate dehydrogenase — —
Escherichia coli ECRC62 0.33 BNILDI_11900 pdxJ pyridoxine 5'-phosphate synthase 0.60 BNILDI_16140 gdhA NADP-specific glutamate dehydrogenase — —
Escherichia coli Nissle 1917 0.33 ECOLIN_RS14515 pyridoxine 5'-phosphate synthase 0.60 ECOLIN_RS09810 NADP-specific glutamate dehydrogenase — —
Escherichia coli BL21 0.33 ECD_02458 pyridoxine 5'-phosphate synthase 0.60 ECD_01730 glutamate dehydrogenase, NADP-specific — —
Escherichia coli ECRC101 0.33 MCAODC_11955 pdxJ pyridoxine 5'-phosphate synthase 0.60 MCAODC_18570 gdhA NADP-specific glutamate dehydrogenase — —
Escherichia coli ECRC98 0.33 JDDGAC_25090 pdxJ pyridoxine 5'-phosphate synthase 0.60 JDDGAC_01415 gdhA NADP-specific glutamate dehydrogenase — —
Escherichia coli ECRC102 0.33 NIAGMN_19195 pdxJ pyridoxine 5'-phosphate synthase 0.60 NIAGMN_01225 gdhA NADP-specific glutamate dehydrogenase — —
Escherichia fergusonii Becca 0.33 EFB2_01332 Pyridoxine 5'-phosphate synthase 0.60 EFB2_02232 NADP-specific glutamate dehydrogenase low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.33 OHPLBJKB_01143 'Pyridoxine 5'-phosphate synthase' transl_table=11 0.60 OHPLBJKB_01971 NADP-specific glutamate dehydrogenase low > 73
Escherichia coli ECRC101 0.33 OKFHMN_21425 pdxJ pyridoxine 5'-phosphate synthase 0.60 OKFHMN_26840 gdhA NADP-specific glutamate dehydrogenase — —
Acinetobacter radioresistens SK82 0.32 MPMX26_02152 Pyridoxine 5'-phosphate synthase 0.64 MPMX26_02304 NADP-specific glutamate dehydrogenase — —
Klebsiella michiganensis M5al 0.32 BWI76_RS21305 pyridoxine 5'-phosphate synthase 0.60 BWI76_RS11610 glutamate dehydrogenase — —
Pseudomonas stutzeri RCH2 0.32 Psest_3089 pyridoxine 5'-phosphate synthase 0.63 Psest_3438 Glutamate dehydrogenase/leucine dehydrogenase — —
Erwinia tracheiphila SCR3 0.31 LU632_RS15370 pdxJ pyridoxine 5'-phosphate synthase 0.20 LU632_RS12465 Glu/Leu/Phe/Val dehydrogenase — —
Enterobacter sp. TBS_079 0.31 MPMX20_03435 Pyridoxine 5'-phosphate synthase 0.59 MPMX20_01854 NADP-specific glutamate dehydrogenase low > 85
Pantoea sp. MT58 0.31 IAI47_04895 pyridoxine 5'-phosphate synthase 0.19 IAI47_20110 Glu/Leu/Phe/Val dehydrogenase low > 76
Enterobacter asburiae PDN3 0.31 EX28DRAFT_0082 pyridoxine 5'-phosphate synthase 0.59 EX28DRAFT_1763 Glutamate dehydrogenase/leucine dehydrogenase — —
Pectobacterium carotovorum WPP14 0.31 HER17_RS05830 pyridoxine 5'-phosphate synthase 0.59 HER17_RS21320 NADP-specific glutamate dehydrogenase low > 75
Dechlorosoma suillum PS 0.31 Dsui_2463 pyridoxine 5''-phosphate synthase 0.60 Dsui_3211 glutamate dehydrogenase/leucine dehydrogenase — —
Pseudomonas simiae WCS417 0.30 PS417_05205 pyridoxine 5'-phosphate synthase 0.63 PS417_24260 glutamate dehydrogenase — —
Pseudomonas putida KT2440 0.30 PP_1436 Pyridoxine 5'-phosphate synthase 0.64 PP_0675 glutamate dehydrogenase, NADP-dependent — —
Rahnella sp. WP5 0.30 EX31_RS21850 pyridoxine 5'-phosphate synthase 0.61 EX31_RS08255 NADP-specific glutamate dehydrogenase low > 89
Azospirillum brasilense Sp245 0.30 AZOBR_RS22055 pyridoxine 5'-phosphate synthase 0.20 AZOBR_RS22625 glutamate dehydrogenase low > 97
Serratia liquefaciens MT49 0.30 IAI46_19535 pyridoxine 5'-phosphate synthase 0.58 IAI46_24165 NADP-specific glutamate dehydrogenase — —
Herbaspirillum seropedicae SmR1 0.30 HSERO_RS09675 pyridoxine 5'-phosphate synthase 0.21 HSERO_RS19260 glutamate dehydrogenase — —
Ralstonia solanacearum PSI07 0.30 RPSI07_RS18960 pyridoxine 5'-phosphate synthase 0.21 RPSI07_RS21660 Glu/Leu/Phe/Val dehydrogenase — —
Ralstonia solanacearum GMI1000 0.30 RS_RS05280 pyridoxine 5'-phosphate synthase 0.22 RS_RS02380 Glu/Leu/Phe/Val dehydrogenase — —
Pseudomonas fluorescens GW456-L13 0.30 PfGW456L13_4837 Pyridoxine 5'-phosphate synthase (EC 2.6.99.2) 0.63 PfGW456L13_1455 NADP-specific glutamate dehydrogenase (EC 1.4.1.4) — —
Pseudomonas fluorescens SBW25 0.30 PFLU_RS05275 pyridoxine 5'-phosphate synthase 0.63 PFLU_RS26175 NADP-specific glutamate dehydrogenase — —
Pseudomonas fluorescens SBW25-INTG 0.30 PFLU_RS05275 pyridoxine 5'-phosphate synthase 0.63 PFLU_RS26175 NADP-specific glutamate dehydrogenase — —
Ralstonia solanacearum UW163 0.29 UW163_RS11965 pyridoxine 5'-phosphate synthase 0.22 UW163_RS02035 Glu/Leu/Phe/Val dehydrogenase — —
Ralstonia solanacearum IBSBF1503 0.29 RALBFv3_RS14500 pyridoxine 5'-phosphate synthase 0.22 RALBFv3_RS11550 Glu/Leu/Phe/Val dehydrogenase — —
Castellaniella sp019104865 MT123 0.27 ABCV34_RS04215 pyridoxine 5'-phosphate synthase 0.60 ABCV34_RS06190 NADP-specific glutamate dehydrogenase — —
Ralstonia sp. UNC404CL21Col 0.26 ABZR87_RS10220 pyridoxine 5'-phosphate synthase 0.21 ABZR87_RS07515 Glu/Leu/Phe/Val dehydrogenase — —

Not shown: 43 genomes with orthologs for BT3918 only; 2 genomes with orthologs for BT1970 only