Conservation of cofitness between b2029 and b3771 in Escherichia coli BW25113

53 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b2029 gnd 6-phosphogluconate dehydrogenase (NCBI) 1.0 b3771 ilvD dihydroxy-acid dehydratase (NCBI) 0.54 12
Escherichia coli Nissle 1917 1.00 ECOLIN_RS11990 NADP-dependent phosphogluconate dehydrogenase 0.99 ECOLIN_RS21665 dihydroxy-acid dehydratase low > 52
Escherichia coli ECOR27 1.00 NOLOHH_15785 gndA NADP-dependent phosphogluconate dehydrogenase 1.00 NOLOHH_06775 ilvD dihydroxy-acid dehydratase low > 57
Escherichia fergusonii Becca 1.00 EFB2_01826 6-phosphogluconate dehydrogenase, decarboxylating 0.99 EFB2_04865 Dihydroxy-acid dehydratase 0.38 14
Escherichia coli ECRC98 1.00 JDDGAC_28580 gndA NADP-dependent phosphogluconate dehydrogenase 1.00 JDDGAC_18260 ilvD dihydroxy-acid dehydratase
Escherichia coli ECRC101 1.00 OKFHMN_24470 gndA NADP-dependent phosphogluconate dehydrogenase 1.00 OKFHMN_14640 ilvD dihydroxy-acid dehydratase
Escherichia coli ECRC99 1.00 KEDOAH_03680 gndA NADP-dependent phosphogluconate dehydrogenase 1.00 KEDOAH_13510 ilvD dihydroxy-acid dehydratase
Escherichia coli ECRC102 1.00 NIAGMN_22415 gndA NADP-dependent phosphogluconate dehydrogenase 1.00 NIAGMN_12395 ilvD dihydroxy-acid dehydratase
Escherichia coli ECRC101 1.00 MCAODC_20470 gndA NADP-dependent phosphogluconate dehydrogenase 1.00 MCAODC_05145 ilvD dihydroxy-acid dehydratase
Escherichia coli ECRC62 0.99 BNILDI_14695 gndA NADP-dependent phosphogluconate dehydrogenase 1.00 BNILDI_04750 ilvD dihydroxy-acid dehydratase
Escherichia coli BL21 0.99 ECD_01931 6-phosphogluconate dehydrogenase, decarboxylating 1.00 ECD_03649 dihydroxyacid dehydratase low > 60
Escherichia coli ECOR38 0.99 HEPCGN_03175 gndA NADP-dependent phosphogluconate dehydrogenase 1.00 HEPCGN_13350 ilvD dihydroxy-acid dehydratase low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.97 GFF3903 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44) 0.97 GFF2901 Dihydroxy-acid dehydratase (EC 4.2.1.9) low > 78
Escherichia coli HS(pFamp)R (ATCC 700891) 0.97 OHPLBJKB_01659 6-phosphogluconate dehydrogenase, decarboxylating 1.00 OHPLBJKB_04282 Dihydroxy-acid dehydratase low > 73
Enterobacter asburiae PDN3 0.96 EX28DRAFT_0529 6-phosphogluconate dehydrogenase (decarboxylating) 0.96 EX28DRAFT_4443 dihydroxy-acid dehydratase low > 76
Enterobacter sp. TBS_079 0.96 MPMX20_03014 6-phosphogluconate dehydrogenase, decarboxylating 0.97 MPMX20_04499 Dihydroxy-acid dehydratase low > 85
Klebsiella michiganensis M5al 0.95 BWI76_RS19025 phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating) 0.96 BWI76_RS00975 dihydroxy-acid dehydratase 0.42 40
Serratia liquefaciens MT49 0.89 IAI46_08160 NADP-dependent phosphogluconate dehydrogenase 0.90 IAI46_24345 dihydroxy-acid dehydratase
Dickeya dadantii 3937 0.89 DDA3937_RS06805 NADP-dependent phosphogluconate dehydrogenase 0.92 DDA3937_RS20155 dihydroxy-acid dehydratase low > 74
Pantoea sp. MT58 0.89 IAI47_07035 NADP-dependent phosphogluconate dehydrogenase 0.89 IAI47_01035 dihydroxy-acid dehydratase
Rahnella sp. WP5 0.88 EX31_RS11475 NADP-dependent phosphogluconate dehydrogenase 0.87 EX31_RS15005 dihydroxy-acid dehydratase
Pectobacterium carotovorum WPP14 0.88 HER17_RS14505 NADP-dependent phosphogluconate dehydrogenase 0.91 HER17_RS01075 dihydroxy-acid dehydratase low > 75
Dickeya dianthicola ME23 0.88 DZA65_RS07180 NADP-dependent phosphogluconate dehydrogenase 0.91 DZA65_RS21335 dihydroxy-acid dehydratase low > 75
Dickeya dianthicola 67-19 0.87 HGI48_RS06840 NADP-dependent phosphogluconate dehydrogenase 0.91 HGI48_RS20295 dihydroxy-acid dehydratase low > 71
Erwinia tracheiphila SCR3 0.87 LU632_RS08890 gndA NADP-dependent phosphogluconate dehydrogenase 0.86 LU632_RS24400 ilvD dihydroxy-acid dehydratase 0.68 33
Paraburkholderia sabiae LMG 24235 0.76 QEN71_RS20525 NADP-dependent phosphogluconate dehydrogenase 0.74 QEN71_RS21095 dihydroxy-acid dehydratase low > 153
Dyella japonica UNC79MFTsu3.2 0.75 ABZR86_RS13330 NADP-dependent phosphogluconate dehydrogenase 0.28 ABZR86_RS15945 dihydroxy-acid dehydratase low > 74
Paraburkholderia bryophila 376MFSha3.1 0.75 H281DRAFT_03046 6-phosphogluconate dehydrogenase (decarboxylating) 0.74 H281DRAFT_05312 dihydroxyacid dehydratase low > 103
Paraburkholderia graminis OAS925 0.74 ABIE53_005122 6-phosphogluconate dehydrogenase 0.74 ABIE53_006513 dihydroxy-acid dehydratase low > 113
Burkholderia phytofirmans PsJN 0.73 BPHYT_RS29625 6-phosphogluconate dehydrogenase 0.74 BPHYT_RS10100 dihydroxy-acid dehydratase low > 109
Synechococcus elongatus PCC 7942 0.57 Synpcc7942_0039 gnd 6-phosphogluconate dehydrogenase 0.75 Synpcc7942_0626 ilvD dihydroxy-acid dehydratase
Variovorax sp. SCN45 0.55 GFF2954 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44) 0.31 GFF471 Dihydroxy-acid dehydratase (EC 4.2.1.9)
Variovorax sp. OAS795 0.55 ABID97_RS10190 decarboxylating NADP(+)-dependent phosphogluconate dehydrogenase 0.31 ABID97_RS17500 dihydroxy-acid dehydratase
Vibrio cholerae E7946 ATCC 55056 0.54 CSW01_18635 phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating) 0.85 CSW01_00140 dihydroxy-acid dehydratase low > 62
Mycobacterium tuberculosis H37Rv 0.54 Rv1844c Probable 6-phosphogluconate dehydrogenase Gnd1 0.31 Rv0189c Probable dihydroxy-acid dehydratase IlvD (dad)
Echinicola vietnamensis KMM 6221, DSM 17526 0.54 Echvi_4222 6-phosphogluconate dehydrogenase, decarboxylating 0.29 Echvi_2055 dihydroxy-acid dehydratase 0.37 47
Bifidobacterium breve UCC2003 0.53 BBR_RS11465 phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating) 0.56 BBR_RS17635 dihydroxy-acid dehydratase
Parabacteroides merdae CL09T00C40 0.52 HMPREF1078_RS08640 decarboxylating NADP(+)-dependent phosphogluconate dehydrogenase 0.65 HMPREF1078_RS16695 dihydroxy-acid dehydratase low > 61
Bacteroides stercoris CC31F 0.48 HMPREF1181_RS12525 decarboxylating NADP(+)-dependent phosphogluconate dehydrogenase 0.64 HMPREF1181_RS08335 dihydroxy-acid dehydratase low > 56
Phocaeicola dorei CL03T12C01 0.48 ABI39_RS14350 decarboxylating NADP(+)-dependent phosphogluconate dehydrogenase 0.64 ABI39_RS12715 dihydroxy-acid dehydratase low > 72
Bacteroides ovatus ATCC 8483 0.48 BACOVA_00509 phosphogluconate dehydrogenase (decarboxylating) 0.62 BACOVA_03302 dihydroxy-acid dehydratase low > 94
Bacteroides thetaiotaomicron VPI-5482 0.47 BT1222 6-phosphogluconate dehydrogenase,decarboxylating (NCBI ptt file) 0.63 BT2078 dihydroxy-acid dehydratase (NCBI ptt file) low > 81
Mucilaginibacter yixingensis YX-36 DSM 26809 0.47 ABZR88_RS02970 NADP-dependent phosphogluconate dehydrogenase 0.27 ABZR88_RS11575 dihydroxy-acid dehydratase
Phocaeicola vulgatus CL09T03C04 0.47 HMPREF1058_RS18025 decarboxylating NADP(+)-dependent phosphogluconate dehydrogenase 0.64 HMPREF1058_RS16815 dihydroxy-acid dehydratase low > 67
Sinorhizobium meliloti 1021 0.47 SMc04262 6-phosphogluconate dehydrogenase 0.75 SMc04045 dihydroxy-acid dehydratase low > 103
Rhizobium sp. OAE497 0.46 ABIE40_RS11035 NADP-dependent phosphogluconate dehydrogenase 0.75 ABIE40_RS08005 dihydroxy-acid dehydratase low > 107
Agrobacterium fabrum C58 0.46 Atu1526 6-phosphogluconate dehydrogenase, decarboxylating 0.73 Atu1918 dihydroxy-acid dehydratase
Alteromonas macleodii MIT1002 0.46 MIT1002_02397 6-phosphogluconate dehydrogenase, NADP(+)-dependent, decarboxylating 0.79 MIT1002_04041 Dihydroxy-acid dehydratase low > 70
Pedobacter sp. GW460-11-11-14-LB5 0.43 CA265_RS09805 phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating) 0.27 CA265_RS15795 dihydroxy-acid dehydratase 0.43 68
Azospirillum brasilense Sp245 0.43 AZOBR_RS15725 6-phosphogluconate dehydrogenase 0.74 AZOBR_RS15015 dihydroxy-acid dehydratase low > 97
Shewanella oneidensis MR-1 0.43 SO1902 gnd 6-phosphogluconate dehydrogenase, decarboxylating (NCBI ptt file) 0.80 SO4345 ilvD dihydroxy-acid dehydratase (NCBI ptt file) low > 76
Shewanella amazonensis SB2B 0.43 Sama_1365 6-phosphogluconate dehydrogenase (RefSeq) 0.79 Sama_3279 dihydroxy-acid dehydratase (RefSeq) low > 62
Shewanella sp. ANA-3 0.43 Shewana3_1677 6-phosphogluconate dehydrogenase (RefSeq) 0.80 Shewana3_0358 dihydroxy-acid dehydratase (RefSeq) low > 73
Shewanella loihica PV-4 0.43 Shew_2561 6-phosphogluconate dehydrogenase (RefSeq) 0.78 Shew_0292 dihydroxy-acid dehydratase (RefSeq) low > 60

Not shown: 0 genomes with orthologs for b2029 only; 48 genomes with orthologs for b3771 only