Conservation of cofitness between b0799 and b4389 in Escherichia coli BW25113

51 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b0799 dinG ATP-dependent DNA helicase (NCBI) 1.0 b4389 radA predicted repair protein (NCBI) 0.39 1
Escherichia coli BL21 1.00 ECD_00766 ATP-dependent DNA helicase 1.00 ECD_04265 DNA repair protein low > 60
Escherichia coli ECRC98 1.00 JDDGAC_09915 dinG ATP-dependent DNA helicase DinG 1.00 JDDGAC_14790 radA DNA repair protein RadA — —
Escherichia coli ECRC101 1.00 MCAODC_25495 dinG ATP-dependent DNA helicase DinG 1.00 MCAODC_01710 radA DNA repair protein RadA — —
Escherichia coli ECRC102 1.00 NIAGMN_04325 dinG ATP-dependent DNA helicase DinG 1.00 NIAGMN_09045 radA DNA repair protein RadA — —
Escherichia fergusonii Becca 1.00 EFB2_03306 ATP-dependent DNA helicase DinG 1.00 EFB2_04057 DNA repair protein RadA low > 86
Escherichia coli ECRC101 1.00 OKFHMN_06280 dinG ATP-dependent DNA helicase DinG 1.00 OKFHMN_11195 radA DNA repair protein RadA — —
Escherichia coli Nissle 1917 1.00 ECOLIN_RS04255 ATP-dependent DNA helicase DinG 1.00 ECOLIN_RS25190 DNA repair protein RadA — —
Escherichia coli ECRC62 1.00 BNILDI_20910 dinG ATP-dependent DNA helicase DinG 1.00 BNILDI_08075 radA DNA repair protein RadA — —
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_02914 putative ATP-dependent helicase DinG 1.00 OHPLBJKB_03672 DNA repair protein RadA low > 73
Escherichia coli ECOR38 1.00 HEPCGN_01765 dinG ATP-dependent DNA helicase DinG 0.99 HEPCGN_09195 radA DNA repair protein RadA low > 85
Escherichia coli ECRC99 1.00 KEDOAH_21630 dinG ATP-dependent DNA helicase DinG 1.00 KEDOAH_16960 radA DNA repair protein RadA — —
Escherichia coli ECOR27 0.99 NOLOHH_22630 dinG ATP-dependent DNA helicase DinG 1.00 NOLOHH_03520 radA DNA repair protein RadA low > 57
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.92 GFF697 ATP-dependent helicase DinG/Rad3 0.98 GFF1057 DNA repair protein RadA low > 78
Klebsiella michiganensis M5al 0.92 BWI76_RS08920 ATP-dependent DNA helicase DinG 0.97 BWI76_RS04165 DNA repair protein RadA low > 92
Enterobacter asburiae PDN3 0.89 EX28DRAFT_2193 Rad3-related DNA helicases 0.97 EX28DRAFT_3597 DNA repair protein RadA low > 76
Enterobacter sp. TBS_079 0.89 MPMX20_01426 ATP-dependent DNA helicase DinG 0.97 MPMX20_00694 DNA repair protein RadA low > 85
Serratia liquefaciens MT49 0.71 IAI46_07445 ATP-dependent DNA helicase DinG 0.93 IAI46_02945 DNA repair protein RadA low > 86
Pantoea sp. MT58 0.70 IAI47_13295 ATP-dependent DNA helicase DinG 0.93 IAI47_16345 DNA repair protein RadA low > 76
Erwinia tracheiphila SCR3 0.70 LU632_RS09400 dinG ATP-dependent DNA helicase DinG 0.94 LU632_RS02550 radA DNA repair protein RadA low > 74
Pectobacterium carotovorum WPP14 0.69 HER17_RS13230 ATP-dependent DNA helicase DinG 0.90 HER17_RS19085 DNA repair protein RadA low > 75
Rahnella sp. WP5 0.68 EX31_RS19020 ATP-dependent DNA helicase DinG 0.94 EX31_RS04030 DNA repair protein RadA low > 89
Dickeya dadantii 3937 0.67 DDA3937_RS08765 ATP-dependent DNA helicase DinG 0.87 DDA3937_RS02420 DNA repair protein RadA low > 74
Dickeya dianthicola ME23 0.66 DZA65_RS09155 ATP-dependent DNA helicase DinG 0.88 DZA65_RS02485 DNA repair protein RadA low > 75
Dickeya dianthicola 67-19 0.66 HGI48_RS08850 ATP-dependent DNA helicase DinG 0.87 HGI48_RS02380 DNA repair protein RadA low > 71
Shewanella sp. ANA-3 0.25 Shewana3_2630 dinG ATP-dependent DNA helicase DinG (RefSeq) 0.77 Shewana3_1049 DNA repair protein RadA (RefSeq) low > 73
Shewanella oneidensis MR-1 0.24 SO1819 dinG ATP-dependent helicase DinG (NCBI ptt file) 0.77 SO1226 radA DNA repair protein RadA (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.24 Shew_2483 dinG ATP-dependent DNA helicase DinG (RefSeq) 0.37 Shew_2807 DNA repair protein RadA (RefSeq) 0.67 7
Shewanella amazonensis SB2B 0.24 Sama_1249 dinG ATP-dependent DNA helicase DinG (RefSeq) 0.75 Sama_0981 DNA repair protein RadA (RefSeq) low > 62
Vibrio cholerae E7946 ATCC 55056 0.23 CSW01_09290 ATP-dependent DNA helicase DinG 0.80 CSW01_11870 DNA repair protein RadA low > 62
Dyella japonica UNC79MFTsu3.2 0.23 ABZR86_RS16845 ATP-dependent DNA helicase DinG 0.58 ABZR86_RS08845 DNA repair protein RadA low > 74
Rhodanobacter sp. FW510-T8 0.22 OKGIIK_12870 dinG ATP-dependent DNA helicase DinG 0.58 OKGIIK_09580 radA DNA repair protein RadA low > 52
Rhodanobacter denitrificans FW104-10B01 0.22 LRK54_RS11005 ATP-dependent DNA helicase DinG 0.58 LRK54_RS02525 DNA repair protein RadA low > 59
Rhodanobacter denitrificans MT42 0.22 LRK55_RS10710 ATP-dependent DNA helicase DinG 0.58 LRK55_RS02280 DNA repair protein RadA low > 63
Pseudomonas fluorescens GW456-L13 0.22 PfGW456L13_4624 ATP-dependent helicase DinG/Rad3 0.64 PfGW456L13_1442 DNA repair protein RadA 0.35 19
Pseudomonas fluorescens FW300-N2C3 0.22 AO356_05425 ATP-dependent DNA helicase DinG 0.64 AO356_15680 DNA repair protein RadA 0.84 2
Pseudomonas fluorescens FW300-N2E2 0.22 Pf6N2E2_2942 ATP-dependent helicase DinG/Rad3 0.64 Pf6N2E2_5076 DNA repair protein RadA 0.35 14
Pseudomonas sp. S08-1 0.22 OH686_04830 ATP-dependent helicase DinG/Rad3 0.63 OH686_16185 DNA repair protein RadA low > 80
Pseudomonas fluorescens FW300-N2E3 0.22 AO353_17020 ATP-dependent DNA helicase DinG 0.63 AO353_13980 DNA repair protein RadA 0.60 5
Pseudomonas syringae pv. syringae B728a 0.22 Psyr_3856 Helicase c2 0.64 Psyr_4275 DNA replication and repair protein RadA low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.22 Psyr_3856 Helicase c2 0.64 Psyr_4275 DNA replication and repair protein RadA low > 86
Pseudomonas fluorescens SBW25 0.22 PFLU_RS06540 ATP-dependent DNA helicase DinG 0.64 PFLU_RS26230 DNA repair protein RadA low > 109
Pseudomonas fluorescens SBW25-INTG 0.22 PFLU_RS06540 ATP-dependent DNA helicase DinG 0.64 PFLU_RS26230 DNA repair protein RadA low > 109
Pseudomonas stutzeri RCH2 0.22 Psest_2857 Rad3-related DNA helicases 0.63 Psest_3401 DNA repair protein RadA 0.18 36
Pseudomonas simiae WCS417 0.22 PS417_06510 ATP-dependent DNA helicase DinG 0.63 PS417_24305 DNA repair protein RadA 0.32 6
Pseudomonas sp. RS175 0.22 PFR28_00520 ATP-dependent DNA helicase DinG 0.64 PFR28_03792 DNA repair protein RadA low > 88
Pseudomonas fluorescens FW300-N1B4 0.22 Pf1N1B4_3194 ATP-dependent helicase DinG/Rad3 0.64 Pf1N1B4_2768 DNA repair protein RadA — —
Acidovorax sp. GW101-3H11 0.21 Ac3H11_4422 ATP-dependent helicase DinG/Rad3 0.51 Ac3H11_3371 DNA repair protein RadA — —
Marinobacter adhaerens HP15 0.21 HP15_1856 helicase c2 0.69 HP15_487 DNA repair protein RadA 0.74 4
Pseudomonas putida KT2440 0.21 PP_1125 putative Helicase 0.62 PP_4644 DNA repair enzyme low > 96
Xanthomonas campestris pv. campestris strain 8004 0.21 Xcc-8004.5017.1 ATP-dependent helicase DinG/Rad3 0.59 Xcc-8004.3812.1 DNA repair protein RadA low > 74
Hydrogenophaga sp. GW460-11-11-14-LB1 0.20 GFF2695 ATP-dependent helicase DinG/Rad3 0.50 GFF1833 DNA repair protein RadA low > 90

Not shown: 0 genomes with orthologs for b0799 only; 50 genomes with orthologs for b4389 only