| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Escherichia coli BW25113 | 1.0 | b4213 | cpdB | bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein (NCBI) | 1.0 | b3181 | greA | transcription elongation factor: cleaves 3' nucleotide of paused mRNA (VIMSS) | 0.24 | 11 |
| Escherichia coli Nissle 1917 | 1.00 | ECOLIN_RS24475 | | 2',3'-cyclic-nucleotide 2'-phosphodiesterase | 1.00 | ECOLIN_RS18320 | | transcription elongation factor GreA | — | — |
| Escherichia coli ECOR38 | 1.00 | HEPCGN_10240 | cpdB | 2',3'-cyclic-nucleotide 2'-phosphodiesterase | 1.00 | HEPCGN_16920 | greA | transcription elongation factor GreA | — | — |
| Escherichia fergusonii Becca | 1.00 | EFB2_04315 | | 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase | 1.00 | EFB2_00642 | | Transcription elongation factor GreA | low | > 86 |
| Escherichia coli ECRC62 | 1.00 | BNILDI_07215 | cpdB | 2',3'-cyclic-nucleotide 2'-phosphodiesterase | 1.00 | BNILDI_01690 | greA | transcription elongation factor GreA | — | — |
| Escherichia coli ECOR27 | 1.00 | NOLOHH_04305 | cpdB | 2',3'-cyclic-nucleotide 2'-phosphodiesterase | 1.00 | NOLOHH_09845 | greA | transcription elongation factor GreA | — | — |
| Escherichia coli ECRC102 | 0.99 | NIAGMN_09895 | cpdB | 2',3'-cyclic-nucleotide 2'-phosphodiesterase | 1.00 | NIAGMN_15805 | greA | transcription elongation factor GreA | — | — |
| Escherichia coli ECRC99 | 0.99 | KEDOAH_16110 | cpdB | 2',3'-cyclic-nucleotide 2'-phosphodiesterase | 1.00 | KEDOAH_10105 | greA | transcription elongation factor GreA | — | — |
| Escherichia coli BL21 | 0.99 | ECD_04085 | | 2':3'-cyclic-nucleotide 2'-phosphodiesterase | 1.00 | ECD_03046 | | transcript cleavage factor | low | > 60 |
| Escherichia coli ECRC101 | 0.99 | OKFHMN_12045 | cpdB | 2',3'-cyclic-nucleotide 2'-phosphodiesterase | 1.00 | OKFHMN_18045 | greA | transcription elongation factor GreA | — | — |
| Escherichia coli ECRC101 | 0.99 | MCAODC_02560 | cpdB | 2',3'-cyclic-nucleotide 2'-phosphodiesterase | 1.00 | MCAODC_08565 | greA | transcription elongation factor GreA | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.99 | OHPLBJKB_03820 | | '2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase' transl_table=11 | 1.00 | OHPLBJKB_00519 | | Transcription elongation factor GreA | low | > 73 |
| Escherichia coli ECRC98 | 0.99 | JDDGAC_15685 | cpdB | 2',3'-cyclic-nucleotide 2'-phosphodiesterase | 1.00 | JDDGAC_21670 | greA | transcription elongation factor GreA | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.92 | GFF866 | | '2',3'-cyclic-nucleotide 2'-phosphodiesterase (EC 3.1.4.16)' transl_table=11 | 0.98 | GFF2922 | | Transcription elongation factor GreA | low | > 78 |
| Enterobacter asburiae PDN3 | 0.89 | EX28DRAFT_3400 | | 2',3'-cyclic-nucleotide 2'-phosphodiesterase | 0.97 | EX28DRAFT_3232 | | transcription elongation factor GreA | low | > 76 |
| Enterobacter sp. TBS_079 | 0.88 | MPMX20_00491 | | 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase | 0.97 | MPMX20_04085 | | Transcription elongation factor GreA | low | > 85 |
| Klebsiella michiganensis M5al | 0.88 | BWI76_RS02730 | | 2',3'-cyclic-nucleotide 2'-phosphodiesterase | 0.97 | BWI76_RS25160 | | transcription elongation factor GreA | low | > 92 |
| Serratia liquefaciens MT49 | 0.81 | IAI46_01740 | | bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase | 0.89 | IAI46_01880 | | transcription elongation factor GreA | low | > 86 |
| Pectobacterium carotovorum WPP14 | 0.80 | HER17_RS03950 | | bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase | 0.92 | HER17_RS18330 | | transcription elongation factor GreA | — | — |
| Rahnella sp. WP5 | 0.79 | EX31_RS08725 | | bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase | 0.90 | EX31_RS08595 | | transcription elongation factor GreA | low | > 89 |
| Pantoea sp. MT58 | 0.78 | IAI47_02690 | | bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase | 0.86 | IAI47_17080 | | transcription elongation factor GreA | low | > 76 |
| Dickeya dianthicola ME23 | 0.78 | DZA65_RS18330 | | bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase | 0.90 | DZA65_RS03180 | | transcription elongation factor GreA | low | > 75 |
| Dickeya dadantii 3937 | 0.78 | DDA3937_RS17185 | | bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase | 0.90 | DDA3937_RS03015 | | transcription elongation factor GreA | — | — |
| Dickeya dianthicola 67-19 | 0.78 | HGI48_RS17240 | | bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase | 0.90 | HGI48_RS03185 | | transcription elongation factor GreA | low | > 71 |
| Vibrio cholerae E7946 ATCC 55056 | 0.69 | CSW01_12970 | | 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase | 0.63 | CSW01_03330 | | transcription elongation factor GreA | low | > 62 |
| Shewanella sp. ANA-3 | 0.56 | Shewana3_1585 | cpdB | bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein (RefSeq) | 0.74 | Shewana3_1017 | | transcription elongation factor GreA (RefSeq) | low | > 73 |
| Shewanella oneidensis MR-1 | 0.56 | SO3565 | cpdB | 2',3'-cyclic-nucleotide 2'-phosphodiesterase (NCBI ptt file) | 0.75 | SO1191 | greA | transcription elongation factor GreA (NCBI ptt file) | low | > 76 |
| Shewanella amazonensis SB2B | 0.55 | Sama_1563 | cpdB | bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein (RefSeq) | 0.73 | Sama_0951 | | GreA/GreB family elongation factor (RefSeq) | low | > 62 |
| Shewanella loihica PV-4 | 0.54 | Shew_2162 | cpdB | bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein (RefSeq) | 0.72 | Shew_2837 | | transcription elongation factor GreA (RefSeq) | low | > 60 |
| Sinorhizobium meliloti 1021 | 0.42 | SMc04449 | | bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic protein | 0.50 | SMc01218 | | transcription elongation factor GreA | — | — |
| Dinoroseobacter shibae DFL-12 | 0.42 | Dshi_2189 | | 5'-Nucleotidase domain protein (RefSeq) | 0.59 | Dshi_3076 | | transcription elongation factor GreA (RefSeq) | low | > 64 |
| Agrobacterium fabrum C58 | 0.42 | Atu1210 | | putative 2,3-cyclic nucleotide 2-phosphodiesterase/3-nucleotidase | 0.51 | Atu2182 | | transcription elongation facto | — | — |
| Phaeobacter inhibens DSM 17395 | 0.42 | PGA1_c18140 | | 2',3'-cyclic-nucleotide 2'-phosphodiesterase CpdB | 0.54 | PGA1_c03290 | | transcription elongation factor GreA | low | > 62 |
| Ralstonia solanacearum PSI07 | 0.34 | RPSI07_RS08230 | | bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase | 0.59 | RPSI07_RS15260 | | transcription elongation factor GreA | low | > 81 |
| Ralstonia solanacearum GMI1000 | 0.34 | RS_RS16850 | | bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase | 0.56 | RS_RS07635 | | transcription elongation factor GreA | — | — |
| Ralstonia sp. UNC404CL21Col | 0.33 | ABZR87_RS04330 | | bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase | 0.58 | ABZR87_RS14135 | | transcription elongation factor GreA | low | > 80 |
| Cupriavidus basilensis FW507-4G11 | 0.33 | RR42_RS03845 | | 2', 3'-cyclic nucleotide 2'-phosphodiesterase | 0.57 | RR42_RS13505 | | transcription elongation factor GreA | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.33 | RALBFv3_RS09040 | | bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase | 0.57 | RALBFv3_RS02185 | | transcription elongation factor GreA | low | > 76 |
| Ralstonia solanacearum UW163 | 0.33 | UW163_RS04555 | | bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase | 0.57 | UW163_RS15495 | | transcription elongation factor GreA | — | — |
| Rhodanobacter sp. FW510-T8 | 0.33 | OKGIIK_13510 | ushA | bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase | 0.50 | OKGIIK_07290 | greA | transcription elongation factor GreA | low | > 52 |
| Rhodanobacter denitrificans FW104-10B01 | 0.32 | LRK54_RS10415 | | bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase | 0.49 | LRK54_RS18005 | | transcription elongation factor GreA | low | > 59 |
| Rhodanobacter denitrificans MT42 | 0.32 | LRK55_RS10055 | | bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase | 0.49 | LRK55_RS17860 | | transcription elongation factor GreA | low | > 63 |
| Acidovorax sp. GW101-3H11 | 0.32 | Ac3H11_3791 | | 2',3'-cyclic-nucleotide 2'-phosphodiesterase (EC 3.1.4.16) | 0.57 | Ac3H11_437 | | Transcription elongation factor GreA | low | > 79 |
| Variovorax sp. SCN45 | 0.32 | GFF5698 | | 2',3'-cyclic-nucleotide 2'-phosphodiesterase (EC 3.1.4.16) / 3'-nucleotidase (EC 3.1.3.6) | 0.54 | GFF374 | | Transcription elongation factor GreA | low | > 127 |
| Dyella japonica UNC79MFTsu3.2 | 0.31 | ABZR86_RS16000 | | bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase | 0.50 | ABZR86_RS05595 | | transcription elongation factor GreA | low | > 74 |
| Bacteroides ovatus ATCC 8483 | 0.14 | BACOVA_00529 | | 5'-nucleotidase, C-terminal domain protein | 0.38 | BACOVA_01643 | | prokaryotic transcription elongation factor, GreA/GreB domain protein | low | > 94 |
| Phocaeicola vulgatus CL09T03C04 | 0.13 | HMPREF1058_RS17715 | | bifunctional metallophosphatase/5'-nucleotidase | 0.40 | HMPREF1058_RS12565 | | transcription elongation factor GreA | — | — |
| Bacteroides thetaiotaomicron VPI-5482 | 0.12 | BT1236 | | 2',3'-cyclic-nucleotide 2'-phosphodiesterase precursor (NCBI ptt file) | 0.38 | BT2565 | | transcription elongation factor greA (NCBI ptt file) | — | — |
| Phocaeicola dorei CL03T12C01 | 0.12 | ABI39_RS13925 | | bifunctional metallophosphatase/5'-nucleotidase | 0.40 | ABI39_RS04145 | | transcription elongation factor GreA | low | > 72 |
| Bacteroides stercoris CC31F | 0.11 | HMPREF1181_RS04030 | | bifunctional metallophosphatase/5'-nucleotidase | 0.38 | HMPREF1181_RS00805 | | transcription elongation factor GreA | — | — |
Not shown: 1 genomes with orthologs for b4213 only; 48 genomes with orthologs for b3181 only