Conservation of cofitness between b1301 and b1298 in Escherichia coli BW25113

45 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b1301 puuB gamma-Glu-putrescine oxidase, FAD/NAD(P)-binding (NCBI) 1.0 b1298 ycjL probable amidotransferase subunit (VIMSS) 0.40 6
Escherichia coli ECOR27 1.00 NOLOHH_20110 puuB gamma-glutamylputrescine oxidase 0.99 NOLOHH_20125 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase — —
Escherichia coli ECRC62 1.00 BNILDI_18260 puuB gamma-glutamylputrescine oxidase 0.98 BNILDI_18275 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase — —
Escherichia coli BL21 1.00 ECD_01278 gamma-glutamylputrescine oxidoreductase 1.00 ECD_01275 gamma-glutamyl-gamma-aminobutyrate hydrolase low > 60
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_02381 Gamma-glutamylputrescine oxidoreductase 1.00 OHPLBJKB_02384 Gamma-glutamyl-gamma-aminobutyrate hydrolase PuuD low > 73
Escherichia coli ECOR38 1.00 HEPCGN_25775 puuB gamma-glutamylputrescine oxidase 0.98 HEPCGN_25760 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase low > 85
Escherichia coli ECRC101 0.99 MCAODC_15845 puuB gamma-glutamylputrescine oxidase 0.99 MCAODC_15830 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase — —
Escherichia coli ECRC99 0.99 KEDOAH_26350 puuB gamma-glutamylputrescine oxidase 0.98 KEDOAH_26335 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase — —
Escherichia coli ECRC98 0.99 JDDGAC_04970 puuB gamma-glutamylputrescine oxidase 0.97 JDDGAC_04985 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase — —
Escherichia coli ECRC102 0.99 NIAGMN_26595 puuB gamma-glutamylputrescine oxidase 0.99 NIAGMN_26610 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase — —
Escherichia coli ECRC101 0.99 OKFHMN_02425 puuB gamma-glutamylputrescine oxidase 0.99 OKFHMN_02440 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase — —
Klebsiella michiganensis M5al 0.90 BWI76_RS10690 gamma-glutamylputrescine oxidoreductase 0.90 BWI76_RS10705 Gamma-glutamyl-gamma-aminobutyrate hydrolase (EC 3.5.1.94) (from data) 0.39 2
Enterobacter asburiae PDN3 0.89 EX28DRAFT_1502 Glycine/D-amino acid oxidases (deaminating) 0.87 EX28DRAFT_1499 Predicted glutamine amidotransferases low > 76
Serratia liquefaciens MT49 0.82 IAI46_10540 FAD-binding oxidoreductase 0.77 IAI46_10555 gamma-glutamyl-gamma-aminobutyrate hydrolase low > 86
Pantoea sp. MT58 0.73 IAI47_07110 FAD-binding oxidoreductase 0.53 IAI47_07120 gamma-glutamyl-gamma-aminobutyrate hydrolase low > 76
Rahnella sp. WP5 0.72 EX31_RS17910 FAD-binding oxidoreductase 0.55 EX31_RS17900 gamma-glutamyl-gamma-aminobutyrate hydrolase low > 89
Pseudomonas fluorescens FW300-N1B4 0.72 Pf1N1B4_4356 Gamma-glutamyl-putrescine oxidase (EC1.4.3.-) 0.39 Pf1N1B4_2255 Gamma-glutamyl-GABA hydrolase (EC 3.5.1.94) low > 87
Pseudomonas fluorescens FW300-N2E3 0.72 AO353_29290 gamma-glutamylputrescine oxidoreductase 0.34 AO353_29305 Gamma-glutamyl-GABA hydrolase (EC 3.5.1.94) (from data) 0.30 8
Shewanella sp. ANA-3 0.69 Shewana3_3093 FAD dependent oxidoreductase (RefSeq) 0.38 Shewana3_3099 peptidase C26 (RefSeq) 0.64 1
Shewanella oneidensis MR-1 0.68 SO1274 conserved hypothetical protein (NCBI ptt file) 0.38 SO1267 Gamma-glutamyl-gamma-aminobutyrate hydrolase (EC 3.5.1.94) (from data) 0.77 3
Shewanella amazonensis SB2B 0.67 Sama_2638 putative oxidoreductase (RefSeq) 0.35 Sama_2645 Gamma-glutamyl-GABA hydrolase (EC 3.5.1.94) (from data) 0.83 4
Pseudomonas fluorescens FW300-N2C3 0.66 AO356_21495 gamma-glutamylputrescine oxidase (EC 1.4.3.-) (from data) 0.37 AO356_13140 Gamma-glutamyl-GABA hydrolase (EC 3.5.1.94) (from data) 0.74 10
Pseudomonas putida KT2440 0.66 PP_2448 Gamma-glutamylputrescine oxidase (EC 1.4.3.-) (from data) 0.38 PP_5298 putative glutamine amidotransferase low > 96
Pseudomonas sp. S08-1 0.65 OH686_22830 Gamma-glutamyl-putrescine oxidase 0.37 OH686_11480 Gamma-glutamyl-GABA hydrolase low > 80
Pseudomonas stutzeri RCH2 0.65 Psest_1966 Glycine/D-amino acid oxidases (deaminating) 0.37 Psest_4287 Predicted glutamine amidotransferases low > 67
Shewanella loihica PV-4 0.65 Shew_0977 FAD dependent oxidoreductase (RefSeq) 0.36 Shew_0971 peptidase C26 (RefSeq) low > 60
Pseudomonas syringae pv. syringae B728a 0.64 Psyr_2427 gamma-glutamylputrescine oxidase 0.34 Psyr_2706 gamma-glutamyl-gamma-aminobutyrate hydrolase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.64 Psyr_2427 gamma-glutamylputrescine oxidase 0.34 Psyr_2706 gamma-glutamyl-gamma-aminobutyrate hydrolase low > 86
Pseudomonas fluorescens FW300-N2E2 0.63 Pf6N2E2_80 gamma-glutamylputrescine oxidase (EC 1.4.3.-) (from data) 0.36 Pf6N2E2_4510 Gamma-glutamyl-GABA hydrolase (EC 3.5.1.94) (from data) 0.31 31
Agrobacterium fabrum C58 0.53 Atu0194 oxidoreductase 0.32 Atu3369 hypothetical protein 0.17 60
Sinorhizobium meliloti 1021 0.51 SMc01972 oxidoreductase 0.33 SMc03943 hypothetical protein low > 103
Azospirillum brasilense Sp245 0.43 AZOBR_RS08855 FAD-dependent oxidoreductase 0.37 AZOBR_RS02010 glutamine amidotransferase low > 97
Burkholderia phytofirmans PsJN 0.41 BPHYT_RS23125 FAD-dependent oxidoreductase 0.36 BPHYT_RS23165 glutamine amidotransferase — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.38 GFF2043 Glycine/D-amino acid oxidase (deaminating) in putrescine utilization cluster 0.29 GFF2038 Gamma-glutamyl-GABA hydrolase (EC 3.5.1.94) 0.55 32
Variovorax sp. OAS795 0.38 ABID97_RS12365 FAD-binding oxidoreductase 0.19 ABID97_RS02320 type 1 glutamine amidotransferase low > 91
Paraburkholderia sabiae LMG 24235 0.37 QEN71_RS12970 FAD-binding oxidoreductase 0.36 QEN71_RS12930 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein low > 153
Rhodospirillum rubrum S1H 0.37 Rru_A1019 FAD dependent oxidoreductase (NCBI) 0.21 Rru_A0651 Glutamine amidotransferase class-I (NCBI) low > 58
Phaeobacter inhibens DSM 17395 0.35 PGA1_c11510 gamma-glutamylputrescine oxidoreductase PuuB 0.28 PGA1_c09920 putative gamma-glutamyl-gamma-aminobutyrate hydrolase low > 62
Xanthomonas campestris pv. campestris strain 8004 0.34 Xcc-8004.2201.1 glutamine synthetase family protein 0.35 Xcc-8004.2203.1 hypothetical protein low > 74
Dinoroseobacter shibae DFL-12 0.33 Dshi_2227 FAD dependent oxidoreductase (RefSeq) 0.27 Dshi_1229 peptidase C26 (RefSeq) low > 64
Rhizobium sp. OAE497 0.28 ABIE40_RS03205 FAD-binding oxidoreductase 0.31 ABIE40_RS16635 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein low > 107
Caulobacter crescentus NA1000 Δfur 0.28 CCNA_03229 FAD dependent oxidoreductase 0.28 CCNA_03234 glutamine amidotransferase, class I low > 67
Caulobacter crescentus NA1000 0.28 CCNA_03229 FAD dependent oxidoreductase 0.28 CCNA_03234 glutamine amidotransferase, class I 0.75 8
Paraburkholderia bryophila 376MFSha3.1 0.26 H281DRAFT_03219 gamma-glutamylputrescine oxidase 0.35 H281DRAFT_01080 gamma-glutamyl-gamma-aminobutyrate hydrolase — —
Rhodopseudomonas palustris CGA009 0.22 TX73_013660 FAD-dependent oxidoreductase 0.26 TX73_007520 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein low > 86
Variovorax sp. SCN45 0.22 GFF1857 FIG00553873: hypothetical protein 0.19 GFF5374 Glutamine amidotransferase, class I low > 127

Not shown: 30 genomes with orthologs for b1301 only; 3 genomes with orthologs for b1298 only