| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Escherichia coli BW25113 | 1.0 | b2954 | yggV | putative deoxyribonucleotide triphosphate pyrophosphatase (NCBI) | 1.0 | b0948 | ycbY | predicted methyltransferase (NCBI) | 0.35 | 19 |
| Escherichia fergusonii Becca | 0.99 | EFB2_00948 | | dITP/XTP pyrophosphatase | 0.99 | EFB2_03123 | | Ribosomal RNA large subunit methyltransferase K/L | low | > 86 |
| Escherichia coli Nissle 1917 | 0.99 | ECOLIN_RS16430 | | XTP/dITP diphosphatase | 0.99 | ECOLIN_RS04980 | | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | — | — |
| Escherichia coli ECRC101 | 0.98 | OKFHMN_19240 | rdgB | XTP/dITP diphosphatase | 1.00 | OKFHMN_05280 | rlmKL | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | — | — |
| Escherichia coli ECRC102 | 0.98 | NIAGMN_17005 | rdgB | XTP/dITP diphosphatase | 1.00 | NIAGMN_03000 | rlmKL | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | — | — |
| Escherichia coli ECRC99 | 0.98 | KEDOAH_08900 | rdgB | XTP/dITP diphosphatase | 1.00 | KEDOAH_22455 | rlmKL | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | — | — |
| Escherichia coli ECOR27 | 0.98 | NOLOHH_11110 | rdgB | XTP/dITP diphosphatase | 1.00 | NOLOHH_21835 | rlmKL | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | low | > 57 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.98 | OHPLBJKB_00762 | | dITP/XTP pyrophosphatase | 1.00 | OHPLBJKB_02718 | | Ribosomal RNA large subunit methyltransferase K/L | low | > 73 |
| Escherichia coli ECRC98 | 0.98 | JDDGAC_22870 | rdgB | XTP/dITP diphosphatase | 0.99 | JDDGAC_08890 | rlmKL | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | — | — |
| Escherichia coli ECRC62 | 0.98 | BNILDI_09690 | rdgB | XTP/dITP diphosphatase | 1.00 | BNILDI_20000 | rlmKL | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | — | — |
| Escherichia coli BL21 | 0.98 | ECD_02784 | | dITP/XTP pyrophosphatase | 1.00 | ECD_00952 | | 23S rRNA m(2)G2445 and m(7)G2069 methyltransferases, SAM-dependent | — | — |
| Escherichia coli ECRC101 | 0.98 | MCAODC_09760 | rdgB | XTP/dITP diphosphatase | 1.00 | MCAODC_24670 | rlmKL | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | — | — |
| Escherichia coli ECOR38 | 0.98 | HEPCGN_18545 | rdgB | XTP/dITP diphosphatase | 1.00 | HEPCGN_23240 | rlmKL | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | low | > 85 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.94 | GFF3057 | | Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) | 0.92 | GFF3239 | | 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) | low | > 78 |
| Enterobacter sp. TBS_079 | 0.91 | MPMX20_03812 | | dITP/XTP pyrophosphatase | 0.88 | MPMX20_01599 | | Ribosomal RNA large subunit methyltransferase K/L | low | > 85 |
| Klebsiella michiganensis M5al | 0.90 | BWI76_RS24115 | | non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family | 0.88 | BWI76_RS09925 | | 23S rRNA (guanine(2445)-N(2))/(guanine(2069)-N(7))- methyltransferase | low | > 92 |
| Enterobacter asburiae PDN3 | 0.90 | EX28DRAFT_2992 | | non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family | 0.88 | EX28DRAFT_1995 | | Predicted N6-adenine-specific DNA methylase | low | > 76 |
| Dickeya dianthicola 67-19 | 0.84 | HGI48_RS17365 | | XTP/dITP diphosphatase | 0.75 | HGI48_RS12910 | | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | low | > 71 |
| Dickeya dianthicola ME23 | 0.83 | DZA65_RS18455 | | XTP/dITP diphosphatase | 0.75 | DZA65_RS13375 | | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | low | > 75 |
| Dickeya dadantii 3937 | 0.83 | DDA3937_RS17320 | | XTP/dITP diphosphatase | 0.75 | DDA3937_RS12840 | | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | low | > 74 |
| Pantoea sp. MT58 | 0.82 | IAI47_03585 | | XTP/dITP diphosphatase | 0.76 | IAI47_12690 | | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | low | > 76 |
| Rahnella sp. WP5 | 0.82 | EX31_RS02705 | | XTP/dITP diphosphatase | 0.76 | EX31_RS18080 | | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | low | > 89 |
| Serratia liquefaciens MT49 | 0.79 | IAI46_21430 | | XTP/dITP diphosphatase | 0.77 | IAI46_08820 | | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | low | > 86 |
| Pectobacterium carotovorum WPP14 | 0.78 | HER17_RS03790 | | XTP/dITP diphosphatase | 0.77 | HER17_RS11990 | | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | low | > 75 |
| Erwinia tracheiphila SCR3 | 0.77 | LU632_RS05450 | | XTP/dITP diphosphatase | 0.76 | LU632_RS09965 | rlmKL | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | low | > 74 |
| Vibrio cholerae E7946 ATCC 55056 | 0.68 | CSW01_02430 | | non-canonical purine NTP pyrophosphatase | 0.59 | CSW01_07480 | | ribosomal RNA large subunit methyltransferase K/L | low | > 62 |
| Marinobacter adhaerens HP15 | 0.66 | HP15_281 | | non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family | 0.40 | HP15_1379 | | RNA methylase | low | > 73 |
| Alteromonas macleodii MIT1002 | 0.63 | MIT1002_00940 | | dITP/XTP pyrophosphatase | 0.45 | MIT1002_02036 | | Ribosomal RNA large subunit methyltransferase K/L | low | > 70 |
| Kangiella aquimarina DSM 16071 | 0.59 | B158DRAFT_0200 | | non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family | 0.39 | B158DRAFT_2229 | | 23S rRNA m(2)G-2445 methyltransferase (EC 2.1.1.52) | low | > 40 |
| Shewanella loihica PV-4 | 0.58 | Shew_1132 | | RdgB/HAM1 family non-canonical purine NTP pyrophosphatase (RefSeq) | 0.48 | Shew_1812 | | 23S rRNA m(2)G2445 methyltransferase (RefSeq) | — | — |
| Xanthomonas campestris pv. campestris strain 8004 | 0.58 | Xcc-8004.1223.1 | | Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) | 0.39 | Xcc-8004.3335.1 | | 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) | low | > 74 |
| Shewanella amazonensis SB2B | 0.56 | Sama_2482 | | Ham1-like protein (RefSeq) | 0.50 | Sama_1600 | rlmL | 23S rRNA m(2)G2445 methyltransferase (RefSeq) | low | > 62 |
| Shewanella sp. ANA-3 | 0.56 | Shewana3_1189 | | RdgB/HAM1 family non-canonical purine NTP pyrophosphatase (RefSeq) | 0.48 | Shewana3_1601 | rlmL | 23S rRNA m(2)G2445 methyltransferase (RefSeq) | low | > 73 |
| Lysobacter sp. OAE881 | 0.55 | ABIE51_RS17295 | | RdgB/HAM1 family non-canonical purine NTP pyrophosphatase | 0.37 | ABIE51_RS14475 | | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | low | > 62 |
| Shewanella oneidensis MR-1 | 0.55 | SO3358 | | HAM1 protein (NCBI ptt file) | 0.49 | SO1851 | | conserved hypothetical protein (NCBI ptt file) | low | > 76 |
| Dyella japonica UNC79MFTsu3.2 | 0.51 | ABZR86_RS11905 | | RdgB/HAM1 family non-canonical purine NTP pyrophosphatase | 0.41 | ABZR86_RS21235 | | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | low | > 74 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.50 | Psyr_0472 | | Ham1-like protein | 0.42 | Psyr_2108 | | 23S rRNA m(2)G-2445 methyltransferase | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.50 | Psyr_0472 | | Ham1-like protein | 0.42 | Psyr_2108 | | 23S rRNA m(2)G-2445 methyltransferase | low | > 86 |
| Rhodanobacter sp. FW510-T8 | 0.50 | OKGIIK_12155 | rdgB | RdgB/HAM1 family non-canonical purine NTP pyrophosphatase | 0.40 | OKGIIK_03440 | rlmKL | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | low | > 52 |
| Acinetobacter radioresistens SK82 | 0.50 | MPMX26_00400 | | dITP/XTP pyrophosphatase | 0.37 | MPMX26_01097 | | Ribosomal RNA large subunit methyltransferase K/L | low | > 36 |
| Pseudomonas sp. S08-1 | 0.49 | OH686_11015 | | non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family | 0.43 | OH686_03110 | | 23S rRNA (guanine(2445)-N(2))-methyltransferase / 23S rRNA (guanine(2069)-N(7))-methyltransferase | low | > 80 |
| Pseudomonas simiae WCS417 | 0.49 | PS417_26755 | | nucleoside-triphosphate diphosphatase | 0.41 | PS417_20930 | | 50S rRNA methyltransferase | low | > 88 |
| Pseudomonas putida KT2440 | 0.49 | PP_5100 | | dITP/XTP pyrophosphatase | 0.43 | PP_2096 | | fused 23S rRNA m2G2445 methyltransferase and 23S rRNA m7G2069 methyltransferase | 0.27 | 17 |
| Rhodanobacter denitrificans MT42 | 0.49 | LRK55_RS11465 | | RdgB/HAM1 family non-canonical purine NTP pyrophosphatase | 0.41 | LRK55_RS14315 | | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | low | > 63 |
| Rhodanobacter denitrificans FW104-10B01 | 0.49 | LRK54_RS11740 | | RdgB/HAM1 family non-canonical purine NTP pyrophosphatase | 0.41 | LRK54_RS14600 | | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | low | > 59 |
| Pseudomonas fluorescens SBW25 | 0.49 | PFLU_RS28400 | | RdgB/HAM1 family non-canonical purine NTP pyrophosphatase | 0.41 | PFLU_RS22545 | | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | low | > 109 |
| Pseudomonas fluorescens FW300-N2E3 | 0.49 | AO353_08195 | | non-canonical purine NTP pyrophosphatase | 0.40 | AO353_00775 | | 50S rRNA methyltransferase | low | > 101 |
| Pseudomonas sp. RS175 | 0.49 | PFR28_04248 | | dITP/XTP pyrophosphatase | 0.40 | PFR28_01055 | | Ribosomal RNA large subunit methyltransferase K/L | low | > 88 |
| Pseudomonas fluorescens SBW25-INTG | 0.49 | PFLU_RS28400 | | RdgB/HAM1 family non-canonical purine NTP pyrophosphatase | 0.41 | PFLU_RS22545 | | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | 0.14 | 87 |
| Pseudomonas fluorescens FW300-N2C3 | 0.48 | AO356_13395 | | non-canonical purine NTP pyrophosphatase | 0.40 | AO356_02605 | | 50S rRNA methyltransferase | low | > 104 |
| Pseudomonas fluorescens FW300-N2E2 | 0.48 | Pf6N2E2_4594 | | Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) | 0.40 | Pf6N2E2_2346 | | 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) | low | > 103 |
| Pseudomonas fluorescens GW456-L13 | 0.48 | PfGW456L13_1004 | | Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) | 0.41 | PfGW456L13_4094 | | 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) | low | > 87 |
| Pseudomonas fluorescens FW300-N1B4 | 0.48 | Pf1N1B4_2335 | | Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) | 0.40 | Pf1N1B4_3844 | | 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) | low | > 87 |
| Pseudomonas stutzeri RCH2 | 0.48 | Psest_0277 | | non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family | 0.44 | Psest_1949 | | Predicted N6-adenine-specific DNA methylase | low | > 67 |
Not shown: 49 genomes with orthologs for b2954 only; 0 genomes with orthologs for b0948 only