| Orth | Species | Gene | Name | Description | Fitness | %Id | Cov |
| | Pseudomonas putida KT2440 | PP_5166 | | Sigma-54 dependent transcriptional regulator | sig. | 100 | 100 |
| o | Pseudomonas sp. BP01 | JOY50_RS20540 | | sigma 54-interacting transcriptional regulator | insig. | 96 | 100 |
| o | Pseudomonas lactucae CFBP13502 | GEMAOFIL_00427 | | Sigma54-dependent transcriptional activator SfnR | cofit | 81 | 99 |
| o | Pseudomonas simiae WCS417 | PS417_01000 | | Fis family transcriptional regulator | insig. | 80 | 99 |
| o | Pseudomonas orientalis W4I3 | QF045_RS04125 | | sigma 54-interacting transcriptional regulator | insig. | 80 | 99 |
| o | Pseudomonas sp. SVBP6 | COO64_RS12565 | | sigma 54-interacting transcriptional regulator | insig. | 84 | 99 |
| o | Pseudomonas syringae pv. syringae B728a | Psyr_0327 | | Sigma-54 factor, interaction region | insig. | 78 | 100 |
| o | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_0327 | | Sigma-54 factor, interaction region | insig. | 78 | 100 |
| o | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_1715 | | Functional role page for Anaerobic nitric oxide reductase transcription regulator NorR | insig. | 78 | 100 |
| o | Pseudomonas fluorescens GW456-L13 | PfGW456L13_467 | | Functional role page for Anaerobic nitric oxide reductase transcription regulator NorR | insig. | 81 | 99 |
| o | Pseudomonas fluorescens FW300-N2E3 | AO353_11590 | | Fis family transcriptional regulator | insig. | 79 | 99 |
| o | Pseudomonas fluorescens SBW25 | PFLU_RS01075 | | sigma-54-dependent Fis family transcriptional regulator | insig. | 79 | 99 |
| o | Pseudomonas fluorescens SBW25-INTG | PFLU_RS01075 | | sigma-54-dependent Fis family transcriptional regulator | insig. | 79 | 99 |
| o | Pseudomonas sp. DMC3 | GFF4221 | | Sigma54-dependent transcriptional activator SfnR | cofit | 80 | 97 |
| o | Pseudomonas fluorescens FW300-N2C3 | AO356_10430 | | Fis family transcriptional regulator | insig. | 79 | 99 |
| o | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_3954 | | Functional role page for Anaerobic nitric oxide reductase transcription regulator NorR | insig. | 79 | 99 |
| o | Pseudomonas sp. RS175 | PFR28_04815 | | Sigma54-dependent transcriptional activator SfnR | insig. | 78 | 100 |
| o | Pseudomonas aeruginosa PUPa3 | DQ20_RS48520 | | sigma-54-dependent transcriptional regulator | insig. | 69 | 96 |
| o | Pseudomonas aeruginosa MRSN321 | DY961_RS13200 | | sigma-54-dependent transcriptional regulator | insig. | 69 | 96 |
| o | Pseudomonas aeruginosa PA14 | IKLFDK_20285 | | Fis family transcriptional regulator | strong | 69 | 96 |
| o | Pseudomonas sp. S08-1 | OH686_11645 | | sigma-54-dependent transcriptional regulator | cofit | 73 | 96 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS10865 | | sigma-54-dependent Fis family transcriptional regulator | insig. | 55 | 95 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS10865 | | sigma-54-dependent Fis family transcriptional regulator | sig. | 55 | 95 |
| | Pseudomonas sp. S08-1 | OH686_06630 | | T6SS sigma-54-dependent regulator VasH | insig. | 54 | 95 |
| | Pseudomonas aeruginosa PA14 | IKLFDK_11555 | | transcriptional regulator | no data | 54 | 95 |
| | Pseudomonas sp. SVBP6 | COO64_RS13820 | | sigma-54-dependent Fis family transcriptional regulator | insig. | 53 | 95 |
| | Pseudomonas sp. BP01 | JOY50_RS26915 | | sigma-54-dependent Fis family transcriptional regulator | no data | 53 | 95 |
| | Pseudomonas aeruginosa MRSN321 | DY961_RS18190 | | sigma-54-dependent transcriptional regulator | insig. | 54 | 95 |
| | Pseudomonas aeruginosa PUPa3 | DQ20_RS59425 | | sigma-54-dependent transcriptional regulator | insig. | 54 | 95 |
| | Methylophilus sp. DMC18 | GFF1988 | | Sigma54-dependent transcriptional activator SfnR | insig. | 52 | 95 |
| | Pseudomonas orientalis W4I3 | QF045_RS12080 | | sigma-54 dependent transcriptional regulator | cofit | 51 | 95 |
| | Pseudomonas aeruginosa MRSN321 | DY961_RS18165 | | sigma-54 dependent transcriptional regulator | sig. | 52 | 95 |
| | Pseudomonas aeruginosa PA14 | IKLFDK_11530 | | Fis family transcriptional regulator | sig. | 52 | 95 |
| | Pseudomonas aeruginosa PUPa3 | DQ20_RS59400 | | sigma-54 dependent transcriptional regulator | insig. | 52 | 95 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_02112 | | Sigma54-dependent transcriptional activator SfnR | cofit | 51 | 95 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS10100 | | sigma-54-dependent Fis family transcriptional regulator | insig. | 51 | 95 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS10100 | | sigma-54-dependent Fis family transcriptional regulator | insig. | 51 | 95 |
| | Pseudomonas simiae WCS417 | PS417_09450 | | Fis family transcriptional regulator | insig. | 51 | 95 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_28970 | | Fis family transcriptional regulator | insig. | 51 | 95 |
| | Pseudomonas sp. BP01 | JOY50_RS05065 | sfnR | sigma54-dependent transcriptional activator SfnR | insig. | 52 | 95 |
| | Pseudomonas syringae pv. syringae B728a | Psyr_3248 | | Helix-turn-helix, Fis-type | insig. | 50 | 95 |
| | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_3248 | | Helix-turn-helix, Fis-type | insig. | 50 | 95 |
| | Pseudomonas putida KT2440 | PP_2771 | | Sigma-54 dependent transcriptional regulator | insig. | 52 | 95 |
| | Pseudomonas sp. SVBP6 | COO64_RS10685 | | sigma-54-dependent Fis family transcriptional regulator | insig. | 51 | 95 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_28365 | | Fis family transcriptional regulator | sig. | 50 | 95 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_1428 | | Alkanesulfonates-binding protein | insig. | 50 | 95 |
| | Pseudomonas sp. RS175 | PFR28_02293 | | Sigma54-dependent transcriptional activator SfnR | sig. | 50 | 95 |
| | Herbaspirillum seropedicae SmR1 | HSERO_RS04750 | | Fis family transcriptional regulator | insig. | 49 | 97 |
| | Ralstonia sp. UNC404CL21Col | ABZR87_RS21180 | | sigma-54 dependent transcriptional regulator | insig. | 50 | 88 |
| | Serratia liquefaciens MT49 | IAI46_07205 | | sigma-54-dependent Fis family transcriptional regulator | insig. | 49 | 87 |
| | Klebsiella michiganensis M5al | BWI76_RS22905 | | ATPase AAA | insig. | 49 | 88 |
| | Erwinia amylovora T8 | OLJFJH_13990 | | AAA family ATPase | insig. | 48 | 88 |
| | Klebsiella pneumoniae MRSN742743 | KFA93_RS17400 | | sigma-54-dependent Fis family transcriptional regulator | insig. | 46 | 91 |
| | Klebsiella pneumoniae MKP103 | KDGMDA_03460 | | AAA family ATPase | insig. | 46 | 91 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_03845 | | Fis family transcriptional regulator | cofit | 46 | 92 |
| | Rhodopseudomonas palustris CGA009 | TX73_006510 | | sigma-54 dependent transcriptional regulator | strong | 44 | 91 |
| | Pantoea agglomerans CFBP13505 P0401 | PagCFBP13505_RS12345 | | sigma-54-dependent Fis family transcriptional regulator | cofit | 45 | 88 |
| | Rhodospirillum rubrum S1H | Rru_A0540 | | Two Component, Sigma54 Specific, Transcriptional Regulator, Fis family (NCBI) | insig. | 46 | 88 |
| | Pseudomonas sp. S08-1 | OH686_02845 | | Flagellar two-component response regulator FleR | strong | 47 | 89 |
| | Desulfovibrio vulgaris Hildenborough JW710 | DVU0110 | ntrC | sigma-54 dependent transcriptional regulator/response regulator (TIGR) | cofit | 46 | 88 |
| | Pseudomonas stutzeri RCH2 | Psest_1767 | | Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains | insig. | 48 | 88 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_18670 | | Fis family transcriptional regulator | strong | 47 | 89 |
| | Pseudomonas sp. DMC3 | GFF2447 | | Regulatory protein AtoC | cofit | 47 | 88 |
| | Pseudomonas sp. RS175 | PFR28_00830 | | Regulatory protein AtoC | cofit | 47 | 89 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_2595 | | Flagellar regulatory protein FleQ | sig. | 45 | 92 |
| | Desulfovibrio vulgaris Miyazaki F | DvMF_1993 | | two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) | sig. | 47 | 85 |
| | Pseudomonas aeruginosa MRSN321 | DY961_RS06955 | fleR;inference=COORDINATES | sigma-54-dependent response regulator transcription factor FleR | strong | 49 | 89 |
| | Pseudomonas aeruginosa PA14 | IKLFDK_05055 | | sigma-54-dependent response regulator transcription factor FleR | strong | 49 | 89 |
| | Pseudomonas aeruginosa PUPa3 | DQ20_RS45880 | fleR;inference=COORDINATES | sigma-54-dependent response regulator transcription factor FleR | strong | 49 | 89 |
| | Xanthobacter sp. DMC5 | GFF4458 | | Transcriptional regulatory protein ZraR | insig. | 48 | 84 |
| | Pseudomonas segetis P6 | ACVTMO_RS01120 | | sigma-54 dependent transcriptional regulator | insig. | 47 | 85 |
| | Pantoea sp. MT58 | IAI47_21575 | | sigma-54-dependent Fis family transcriptional regulator | insig. | 45 | 87 |
| | Caulobacter crescentus NA1000 | CCNA_00954 | | AAA-family response regulator flbD | strong | 43 | 89 |
| | Caulobacter crescentus NA1000 Δfur | CCNA_00954 | | AAA-family response regulator flbD | cofit | 43 | 89 |
| | Pseudomonas fluorescens GW456-L13 | PfGW456L13_4355 | | Flagellar regulatory protein FleQ | sig. | 46 | 89 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS21785 | | sigma-54-dependent Fis family transcriptional regulator | cofit | 46 | 88 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS21785 | | sigma-54-dependent Fis family transcriptional regulator | cofit | 46 | 88 |
| | Pseudomonas putida KT2440 | PP_3503 | | Sigma-54 dependent transcriptional regulator | sig. | 46 | 85 |
| | Rhodanobacter sp000427505 FW510-R12 | LRK53_RS15305 | | PEP-CTERM-box response regulator transcription factor | insig. | 47 | 83 |
| | Pseudomonas orientalis W4I3 | QF045_RS21945 | | sigma-54 dependent transcriptional regulator | insig. | 46 | 88 |
| | Pseudomonas simiae WCS417 | PS417_19815 | | Fis family transcriptional regulator | no data | 46 | 88 |
| | Pseudomonas sp. SVBP6 | COO64_RS14675 | | sigma-54 dependent transcriptional regulator | insig. | 45 | 86 |
| | Pseudomonas putida KT2440 | PP_4371 | | two component system AtoC DNA-binding transcriptional activator | strong | 46 | 88 |
| | Magnetospirillum magneticum AMB-1 | AMB_RS02570 | | sigma-54-dependent Fis family transcriptional regulator | insig. | 44 | 89 |
| | Desulfovibrio vulgaris Hildenborough JW710 | DVU2827 | | sigma-54 dependent transcriptional regulator (TIGR) | insig. | 42 | 89 |
| | Marinobacter adhaerens HP15 | HP15_1891 | | two component, sigma54 specific, transcriptional regulator, Fis family | insig. | 39 | 97 |
| | Pseudomonas sp. SVBP6 | COO64_RS21290 | | sigma-54 dependent transcriptional regulator | insig. | 48 | 87 |
| | Pseudomonas sp. S08-1 | OH686_17260 | | Two-component sensor CbrB: intrcellular carbon:nitrogen balance | strong | 45 | 86 |
| | Pseudomonas sp. BP01 | JOY50_RS00695 | | sigma-54 dependent transcriptional regulator | insig. | 46 | 88 |
| | Pseudomonas sp. BP01 | JOY50_RS06050 | | sigma-54 dependent transcriptional regulator | insig. | 45 | 85 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_04161 | | Regulatory protein AtoC | cofit | 47 | 86 |
| | Rhodanobacter denitrificans FW104-10B01 | LRK54_RS13270 | | PEP-CTERM-box response regulator transcription factor | insig. | 47 | 83 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS30045 | | ATPase AAA | insig. | 44 | 93 |
| | Pseudomonas putida KT2440 | PP_4696 | | Nitrogen regulation protein NR(I) | strong | 44 | 86 |
| | Pseudomonas sp. BP01 | JOY50_RS27675 | | sigma-54 dependent transcriptional regulator | cofit | 44 | 87 |
| | Rhodanobacter denitrificans MT42 | LRK55_RS12970 | | PEP-CTERM-box response regulator transcription factor | insig. | 46 | 83 |
| | Pseudomonas sp. DMC3 | GFF3445 | | Transcriptional regulatory protein ZraR | cofit | 45 | 85 |
| | Azospirillum sp. SherDot2 | MPMX19_03494 | | Regulatory protein AtoC | insig. | 49 | 81 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_4731 | | Sigma-54 dependent transcriptional regulator | sig. | 45 | 85 |
| | Brevundimonas sp. GW460-12-10-14-LB2 | A4249_RS09765 | | sigma-54 dependent transcriptional regulator | insig. | 42 | 89 |