| Orth | Species | Gene | Name | Description | Fitness | %Id | Cov |
| | Erwinia tracheiphila SCR3 | LU632_RS26065 | | recombinase family protein | insig. | 100 | 100 |
| o | Pseudomonas segetis P6 | MPMX49_02758 | | DNA-invertase hin | insig. | 61 | 93 |
| | Pseudomonas segetis P6 | MPMX49_02961 | | DNA-invertase hin | insig. | 47 | 93 |
| o | Pseudomonas stutzeri RCH2 | Psest_3156 | | Site-specific recombinases, DNA invertase Pin homologs | insig. | 41 | 93 |
| o | Dechlorosoma suillum PS | Dsui_0771 | | site-specific recombinase, DNA invertase Pin | insig. | 43 | 93 |
| o | Escherichia fergusonii Becca | EFB2_03773 | | DNA-invertase hin | insig. | 44 | 93 |
| o | Alteromonas macleodii MIT1002 | MIT1002_02482 | | DNA-invertase hin | insig. | 40 | 90 |
| o | Sphingobium sp. HT1-2 | GFF3388 | | Mobile element protein | cofit | 39 | 94 |
| o | Azospirillum sp. SherDot2 | MPMX19_01561 | | DNA-invertase hin | insig. | 39 | 93 |
| o | Acinetobacter radioresistens SK82 | MPMX26_03181 | | DNA-invertase hin | insig. | 38 | 93 |
| o | Shewanella sp. ANA-3 | Shewana3_4319 | | resolvase domain-containing protein (RefSeq) | insig. | 36 | 93 |
| o | Klebsiella pneumoniae MKP103 | KDGMDA_00315 | | Transposon Tn21 resolvase | insig. | 36 | 93 |
| | Acinetobacter radioresistens SK82 | MPMX26_03126 | | DNA-invertase hin | insig. | 38 | 93 |
| | Azospirillum sp. SherDot2 | MPMX19_01313 | | DNA-invertase hin | insig. | 39 | 93 |
| o | Pseudomonas aeruginosa PA14 | IKLFDK_19370 | | Site-specific DNA recombinase SpoIVCA/DNA invertase PinE | insig. | 36 | 93 |
| | Shewanella oneidensis MR-1 | SOA0086 | | site-specific recombinase, resolvase family (NCBI ptt file) | insig. | 37 | 95 |
| | Synechocystis sp000284455 PCC 6803 | SGL_RS01270 | | recombinase family protein | insig. | 36 | 97 |
| | Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | GFF1543 | | DNA-invertase | insig. | 36 | 92 |
| | Rhodopseudomonas palustris CGA009 | TX73_023600 | | recombinase family protein | insig. | 38 | 94 |
| | Variovorax sp. SCN45 | GFF7081 | | Mobile element protein | no data | 36 | 94 |
| | Magnetospirillum magneticum AMB-1 | AMB_RS16510 | | recombinase family protein | cofit | 37 | 92 |
| | Escherichia coli ECRC100 | OKFHMN_11730 | spoIVCA | resolvase | insig. | 34 | 94 |
| | Escherichia coli ECRC101 | MCAODC_02245 | spoIVCA | resolvase | insig. | 34 | 94 |
| | Escherichia coli ECRC102 | NIAGMN_09580 | spoIVCA | resolvase | insig. | 34 | 94 |
| | Escherichia coli ECRC99 | KEDOAH_16415 | spoIVCA | resolvase | no data | 34 | 94 |
| | Escherichia coli Nissle 1917 | ECOLIN_RS26325 | | recombinase family protein | insig. | 35 | 94 |
| | Sphingobium sp. HT1-2 | GFF5286 | | hypothetical protein | cofit | 38 | 92 |
| | Methanococcus maripaludis S2 | MMP_RS03990 | | recombinase family protein | insig. | 35 | 92 |
| | Pantoea agglomerans CFBP13505 P0401 | PagCFBP13505_RS20365 | | recombinase family protein | cofit | 31 | 96 |
| | Pseudomonas stutzeri RCH2 | Psest_4043 | | Site-specific recombinases, DNA invertase Pin homologs | insig. | 35 | 91 |
| | Escherichia coli HS(pFamp)R (ATCC 700891) | OHPLBJKB_04373 | | Transposon Tn3 resolvase | no data | 33 | 93 |
| | Klebsiella pneumoniae MKP103 | KDGMDA_00030 | | Transposon Tn1331 resolvase | no data | 33 | 93 |
| | Klebsiella pneumoniae MKP103 | KDGMDA_02085 | | Transposon Tn1331 resolvase | no data | 33 | 93 |
| | Sphingobium sp. HT1-2 | GFF5292 | | Phage DNA invertase | cofit | 35 | 94 |
| | Kangiella aquimarina DSM 16071 | B158DRAFT_0960 | | Site-specific recombinases, DNA invertase Pin homologs | insig. | 34 | 92 |
| | Rhodospirillum rubrum S1H | Rru_B0010 | | Resolvase (NCBI) | insig. | 35 | 93 |
| | Sinorhizobium meliloti 1021 | SMc02287 | | DNA-invertase | insig. | 36 | 92 |
| | Magnetospirillum magneticum AMB-1 | AMB_RS15985 | | recombinase family protein | cofit | 34 | 90 |
| | Pseudomonas syringae pv. syringae B728a | Psyr_2668 | | Helix-turn-helix, Fis-type | insig. | 34 | 98 |
| | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_2668 | | Helix-turn-helix, Fis-type | insig. | 34 | 98 |
| | Dechlorosoma suillum PS | Dsui_2500 | | site-specific recombinase, DNA invertase Pin | cofit | 34 | 95 |
| | Magnetospirillum magneticum AMB-1 | AMB_RS16710 | | recombinase family protein | insig. | 32 | 90 |
| | Pseudomonas stutzeri RCH2 | Psest_4383 | | Site-specific recombinases, DNA invertase Pin homologs | sig. | 36 | 93 |
| | Erwinia tracheiphila HP pepo 2.2 | IJEDHG_19155 | | DNA-invertase | no data | 34 | 92 |
| | Methanococcus maripaludis JJ | MMJJ_RS02615 | | recombinase family protein | no data | 34 | 92 |
| | Shewanella oneidensis MR-1 | SOA0019 | | ISSod9, DNA-invertase (NCBI ptt file) | no data | 33 | 93 |
| | Shewanella oneidensis MR-1 | SOA0170 | | ISSod9, DNA-invertase (NCBI ptt file) | no data | 33 | 93 |
| | Klebsiella michiganensis M5al | BWI76_RS12375 | | DNA-invertase hin | sig. | 33 | 92 |
| | Pseudomonas putida KT2440 | PP_5490 | | site-specific DNA recombinase | insig. | 36 | 93 |
| | Cupriavidus basilensis FW507-4G11 | RR42_RS00040 | | recombinase | insig. | 34 | 96 |
| | Ralstonia solanacearum UW163 | UW163_RS01540 | | recombinase family protein | insig. | 32 | 94 |
| | Shewanella loihica PV-4 | Shew_3862 | | resolvase domain-containing protein (RefSeq) | insig. | 34 | 94 |
| | Pantoea agglomerans CFBP13505 P0401 | PagCFBP13505_RS12400 | | DUF1492 domain-containing protein | insig. | 33 | 93 |
| | Variovorax sp. OAS795 | ABID97_RS17765 | | recombinase family protein | insig. | 33 | 97 |
| | Azospirillum sp. SherDot2 | MPMX19_06437 | | DNA-invertase hin | insig. | 34 | 91 |
| | Azospirillum sp. SherDot2 | MPMX19_05448 | | DNA-invertase hin | insig. | 34 | 94 |
| | Shewanella loihica PV-4 | Shew_0991 | | resolvase domain-containing protein (RefSeq) | no data | 32 | 95 |
| | Escherichia coli BW25113 | b1545 | pinQ | Qin prophage; predicted site-specific recombinase (NCBI) | insig. | 37 | 75 |
| | Escherichia coli BL21 | ECD_01345 | | Rac prophage; putative site-specific recombinase | no data | 37 | 75 |
| | Escherichia coli BL21 | ECD_01504 | | Qin prophage; putative site-specific recombinase | no data | 37 | 75 |
| | Escherichia coli ECOR27 | NOLOHH_18610 | pinR | Serine recombinase PinR | cofit | 37 | 75 |
| | Escherichia coli BW25113 | b1374 | pinR | Rac prophage; predicted site-specific recombinase (NCBI) | no data | 37 | 75 |
| | Escherichia coli HS(pFamp)R (ATCC 700891) | OHPLBJKB_02167 | | Tn3 family transposase ISYps3 | cofit | 37 | 75 |
| | Dinoroseobacter shibae DFL-12 | Dshi_3683 | | Resolvase domain (RefSeq) | insig. | 35 | 93 |
| | Synechocystis sp000284455 PCC 6803 | SGL_RS00860 | | recombinase family protein | insig. | 31 | 93 |
| | Escherichia fergusonii Becca | EFB2_03222 | | DNA-invertase hin | insig. | 34 | 91 |
| | Escherichia coli ECOR38 | HEPCGN_26710 | spoIVCA | DNA-invertase | insig. | 34 | 94 |
| | Erwinia tracheiphila SCR3 | LU632_RS25210 | | recombinase family protein | insig. | 32 | 97 |
| | Erwinia tracheiphila HP pepo 2.2 | IJEDHG_24180 | | resolvase | cofit | 32 | 93 |
| | Erwinia tracheiphila SCR3 | LU632_RS07385 | | recombinase family protein | insig. | 32 | 93 |
| | Enterobacter sp. TBS_079 | MPMX20_04745 | | Transposon Tn3 resolvase | insig. | 33 | 94 |
| | Erwinia tracheiphila HP pepo 2.2 | IJEDHG_25760 | | Recombinase family protein | cofit | 29 | 93 |
| | Erwinia tracheiphila SCR3 | LU632_RS10670 | | recombinase family protein | sig. | 29 | 93 |
| | Pantoea agglomerans CFBP13505 P0401 | PagCFBP13505_RS22005 | | recombinase family protein | cofit | 34 | 94 |
| | Xanthomonas campestris pv. campestris strain 8004 | Xcc-8004.3230.1 | | Phage DNA invertase | insig. | 30 | 95 |
| | Dinoroseobacter shibae DFL-12 | Dshi_4084 | | Resolvase domain (RefSeq) | insig. | 31 | 95 |
| | Sphingobium sp. HT1-2 | GFF1176 | | Serine recombinase, PinQ/PinR-type | cofit | 31 | 90 |
| | Sphingobium sp. HT1-2 | GFF5326 | | Phage integrase, site-specific serine recombinase | cofit | 32 | 91 |
| | Pseudomonas sp. SVBP6 | COO64_RS22175 | | recombinase family protein | insig. | 32 | 91 |
| | Sphingobium sp. HT1-2 | GFF3226 | | Serine recombinase, PinQ/PinR-type | cofit | 32 | 90 |
| | Paraburkholderia graminis OAS925 | ABIE53_000503 | | DNA invertase Pin-like site-specific DNA recombinase | sig. | 34 | 91 |
| | Azospirillum brasilense Sp245 | AZOBR_RS30300 | | resolvase | insig. | 32 | 72 |
| | Erwinia amylovora T8 | OLJFJH_00050 | | resolvase | no data | 31 | 93 |
| | Erwinia amylovora T8 | OLJFJH_00195 | | resolvase | no data | 31 | 93 |
| | Azospirillum sp. SherDot2 | MPMX19_06460 | | DNA-invertase hin | insig. | 35 | 93 |
| | Escherichia coli ECRC98 | JDDGAC_09160 | spoIVCA | DNA-invertase | strong | 33 | 93 |
| | Escherichia coli ECOR38 | HEPCGN_04245 | | DNA-invertase | insig. | 32 | 91 |
| | Ralstonia solanacearum PSI07 | RPSI07_RS15555 | | recombinase family protein | insig. | 31 | 92 |
| | Pantoea agglomerans CFBP13505 P0401 | PagCFBP13505_RS20345 | | recombinase family protein | cofit | 31 | 93 |
| | Escherichia coli ECOR38 | HEPCGN_24370 | | DNA invertase | insig. | 31 | 91 |
| | Escherichia coli ECRC62 | BNILDI_21055 | | DNA-invertase | cofit | 31 | 90 |
| | Escherichia coli ECRC101 | MCAODC_00110 | pinE | site-specific DNA recombinase | insig. | 32 | 91 |
| | Escherichia coli ECRC102 | NIAGMN_07460 | pinE | site-specific DNA recombinase | insig. | 32 | 91 |
| | Dickeya dianthicola 67-19 | HGI48_RS15525 | | recombinase family protein | insig. | 35 | 91 |
| | Escherichia coli BW25113 | b1158 | pin | e14 prophage; site-specific DNA recombinase (NCBI) | sig. | 33 | 91 |
| | Erwinia tracheiphila HP pepo 2.2 | IJEDHG_04810 | | recombinase family protein | no data | 31 | 94 |
| | Erwinia tracheiphila HP pepo 2.2 | IJEDHG_09975 | | recombinase family protein | no data | 31 | 94 |
| | Variovorax sp. SCN45 | GFF7128 | | Mobile element protein | no data | 34 | 79 |
| | Escherichia coli ECRC101 | MCAODC_20820 | spoIVCA | DNA-invertase | insig. | 32 | 93 |
| | Azospirillum brasilense Sp245 | AZOBR_RS20835 | | DNA resolvase | no data | 32 | 92 |